rna2623, rna2623 (mRNA) Nannochloropsis gaditana

Overview
Namerna2623
Unique Namerna2623
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1228
Alignment locationCM002459.1:821524..822619 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100044g15.1069.mrna
Orig protein idgnl|cribi|Naga_100044g15.1069
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:821524..822619 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100044g15gene2508Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2623rna2623-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28055.1cds2615Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2623 ID=rna2623|Name=rna2623|organism=Nannochloropsis gaditana|type=mRNA|length=1228bp
TAGGCTGCGTCCTGATGCTCTTCGTTGCTCACATCAGAATGCTTTACCAC
CAACACAGATCACGGCCGCTTTGTAGAGGCACCGTCATTTTTACACGTTG
TCGTCTTGTCCATCAGTCATCGACCGGCAACATCCCCTCCCTCTGAACAC
TTGGATTTCGCATTTGCACCAATAACGAAGGCTGATCCATTACGTCTAAA
GCTAGAAAAAGCCACAAAAGGCGGGTAAAAGATCATGGCGAGCCCTTTGA
TGGGTGGTGGTGGCGGGTTGAGTCCAATAATGCGCAGCAATGCAGGGCCC
CCCGCTGGCCATATGGAGGGCGGCACGGGCGGTCCAAGCGCTGAAACCCT
CCGCTTCGTGGCTTCCATCAAGCTGACCAACGTGGTGGCGACCGTGAATC
TAGATTGCAAGCCTGATCTCAAGAGTATTGCCCTGGGTGCGAGGAATGCG
GAGTACAATCCTCGACGTTTCCCTGCTGTCATCATGCACATCAAAGAGCC
TAAGTCGGCCGCTCTCATCTTCTCATCGGGCAAAATGGTCGTGACCGGCA
CGCGTTCGGAGACAGATTCCTTGCAAGCGGCGCACAAGTATACAACAATC
ATGAAACGTCTCAAATGCGCTGCGAACTGCACCGAGTTTCGTGTCCAAAA
CATGACGGCGTCGTGTGACATCGGCTTCCCCATCCGCCTGGAAGGGCTGG
TAATGGATCAGCCCCGCTTTTGTTCTTACGAGCCAGAGCTTTTCCCTGGC
CTTGTGTACCGTATGTATAATCCCAAAATTGTTCTTTTGATTTTCGTGTC
CGGCCGGATCATTATCACGGGCGCAAAGACCAGACGAGACATGGACGCGG
CCTTGGAAAAGCTCCACCCCATCCTACTAGAGTACCGGAAAATGCCCGCG
GCCCCATCATCGGTCCCTGTGAAAGAGGGGGCCATGTCGGCGGGCGGTGG
AGGAAGAGGGGGGGTGGGAAAGCGAAAACGATGAACAAGGGGAAACGTGC
GCAGGGGTGCCTTGACAGGGGCCTGAAAGGGCGATCATGCGCGAGAATGT
GATTTAAACAAATATAAAGATAGCACCTTGATAAAGAGCGAATGACTGTA
GTAGATGGTGAAACGAGGGGCAAAAAGTGTCCGAGCCTGCGGGATAGGTG
AAATTTCAACAAAGATAATGTCAACAAAGCGAGGTGCGAGGCTTTTATCC
GTCAGAAAGAATATATGCACTACATAGT
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protein sequence of rna2623

>rna2623-protein ID=rna2623-protein|Name=rna2623|organism=Nannochloropsis gaditana|type=polypeptide|length=325bp
MVRSYLRRSGLLVPVFLLAVLSLLSNDAVEATHSFNPLARAVKKTGKAMY
RRIMKVGIDRTRHGHTDSEDVSIRVHVDAEQASGRKRGRGRRGRRRVIRK
LEGKNSSTHEDQSLAYEQVGGIKNSSTKPEPMKISLDMHIKDIDAPAGDS
APVAINSELPPDTPPVVQHNTLIAGLAVAGGLVILAVAFTCFRRIYLRRS
EEHTQERPAAAIGSPRKRPMELQNVSSTAAGDLSPAGQDRPGLLSGRLAE
ERAGEKGRIITREESSLGSARLPFTVRGDFFQLKEIDLAMRSVQPCGCIR
RGWCRYQQILLVAQALPFGSMTRTM
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mRNA from alignment at CM002459.1:821524..822619-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2623 ID=rna2623|Name=rna2623|organism=Nannochloropsis gaditana|type=mRNA|length=1096bp|location=Sequence derived from alignment at CM002459.1:821524..822619- (Nannochloropsis gaditana)
ATGGTTAGATCTTACCTCCGTCGTAGCGGCTTACTGGTTCCAGTTTTCTT
GCTTGCTGTCCTTTCTCTCCTTTCCAACGACGCAGTTGAAGCTACACATT
CATTTAATCCCCTAGCGAGGGCTGTCAAAAAGACAGGCAAGGCCATGTAC
CGACGCATCATGAAGGTTGGAATAGATCGGACCCGGCACGGTCACACCGA
TAGCGAGGATGTCTCAATAAGAGTGCATGTGGACGCAGAGCAAGCATCGG
GTAGAAAAAGGGGGAGAGGGCGCCGAGGCCGGCGACGGGTAATACGGAAG
CTAGAAGGCAAGAATTCGTCTACGCATGAAGACCAATCGCTGGCTTATGA
GCAGGTCGGAGGTATTAAGAACTCGTCCACAAAGCCTGAGCCTATGAAAA
TCAGTTTAGACATGCATATTAAAGACATCGATGCTCCGGCGGGAGACTCG
GCGCCCGTTGCAATCAACAGCGAGTTGCCGCCCGACACACCGCCTGTGGT
GCAGCACAATACGCTGATTGCTGGCCTCGCTGTCGCCGGAGGCTTGGTTA
TACTCGCCGTGGCTTTCACTTGTTTCAGACGCATCTACCTACGTCGTTCA
GAGGAGCACACACAGGAGCGCCCTGCTGCTGCAATTGGATCGCCCAGAAA
GCGACCGATGGAGCTTCAAAATGTCAGCAGCACAGCAGCGGGGGACTTGA
GCCCTGCAGGACAGGATCGGCCAGGGCTCTTGTCAGGTAGACTGGCAGAG
GAGCGGGCAGGGGAGAAGGGGAGAATCATAACGAGGGAGGAGAGCAGCCT
GGGAAGTGCGCGCTTGCCCTTCACGGTCCGAGGAGACTTCTTCCAGCTCA
AGGAAATCGATTTGGGTGGGACCGGGGTGCAATCGCCGGGAAGGGGGGGG
CCGGGCACGAAGGTATTTTCCCCGCGCGGATAGCTGGGAGGGACGCGGGG
TCGACCAATTGATTAGAATAACGGCTCGAGCAGCGATGCGAAGCGTCCAG
CCATGTGGATGTATCAGACGTGGGTGGTGTAGATATCAACAGATTTTGCT
CGTAGCTCAAGCCCTCCCTTTCGGATCGATGACGCGAACTATGTAG
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Coding sequence (CDS) from alignment at CM002459.1:821524..822619-

>rna2623 ID=rna2623|Name=rna2623|organism=Nannochloropsis gaditana|type=CDS|length=1956bp|location=Sequence derived from alignment at CM002459.1:821524..822619- (Nannochloropsis gaditana)
CGATGCGAAGCGTCCAGCCATGTGGATGTATCAGACGTGGGTGGTGTAGA
TATCAACAGATTTTGCTCGTAGCTCAAGCCCTCCCTTTCGGATCGATGAC
GCGAACTATGTAGATGGTTAGATCTTACCTCCGTCGTAGCGGCTTACTGG
TTCCAGTTTTCTTGCTTGCTGTCCTTTCTCTCCTTTCCAACGACGCAGTT
GAAGCTACACATTCATTTAATCCCCTAGCGAGGGCTGTCAAAAAGACAGG
CAAGGCCATGTACCGACGCATCATGAAGGTTGGAATAGATCGGACCCGGC
ACGGTCACACCGATAGCGAGGATGTCTCAATAAGAGTGCATGTGGACGCA
GAGCAAGCATCGGGTAGAAAAAGGGGGAGAGGGCGCCGAGGCCGGCGACG
GGTAATACGGAAGCTAGAAGGCAAGAATTCGTCTACGCATGAAGACCAAT
CGCTGGCTTATGAGCAGGTCGGAGGTATTAAGAACTCGTCCACAAAGCCT
GAGCCTATGAAAATCAGTTTAGACATGCATATTAAAGACATCGATGCTCC
GGCGGGAGACTCGGCGCCCGTTGCAATCAACAGCGAGTTGCCGCCCGACA
CACCGCCTGTGGTGCAGCACAATACGCTGATTGCTGGCCTCGCTGTCGCC
GGAGGCTTGGTTATACTCGCCGTGGCTTTCACTTGTTTCAGACGCATCTA
CCTACGTCGTTCAGAGGAGCACACACAGGAGCGCCCTGCTGCTGCAATTG
GATCGCCCAGAAAGCGACCGATGGAGCTTCAAAATGTCAGCAGCACAGCA
GCGGGGGACTTGAGCCCTGCAGGACAGGATCGGCCAGGGCTCTTGTCAGG
TAGACTGGCAGAGGAGCGGGCAGGGGAGAAGGGGAGAATCATAACGAGGG
AGGAGAGCAGCCTGGGAAGTGCGCGCTTGCCCTTCACGGTCCGAGGAGAC
TTCTTCCAGCTCAAGGAAATCGATTTGGCGATGCGAAGCGTCCAGCCATG
TGGATGTATCAGACGTGGGTGGTGTAGATATCAACAGATTTTGCTCGTAG
CTCAAGCCCTCCCTTTCGGATCGATGACGCGAACTATGTAGATGGTTAGA
TCTTACCTCCGTCGTAGCGGCTTACTGGTTCCAGTTTTCTTGCTTGCTGT
CCTTTCTCTCCTTTCCAACGACGCAGTTGAAGCTACACATTCATTTAATC
CCCTAGCGAGGGCTGTCAAAAAGACAGGCAAGGCCATGTACCGACGCATC
ATGAAGGTTGGAATAGATCGGACCCGGCACGGTCACACCGATAGCGAGGA
TGTCTCAATAAGAGTGCATGTGGACGCAGAGCAAGCATCGGGTAGAAAAA
GGGGGAGAGGGCGCCGAGGCCGGCGACGGGTAATACGGAAGCTAGAAGGC
AAGAATTCGTCTACGCATGAAGACCAATCGCTGGCTTATGAGCAGGTCGG
AGGTATTAAGAACTCGTCCACAAAGCCTGAGCCTATGAAAATCAGTTTAG
ACATGCATATTAAAGACATCGATGCTCCGGCGGGAGACTCGGCGCCCGTT
GCAATCAACAGCGAGTTGCCGCCCGACACACCGCCTGTGGTGCAGCACAA
TACGCTGATTGCTGGCCTCGCTGTCGCCGGAGGCTTGGTTATACTCGCCG
TGGCTTTCACTTGTTTCAGACGCATCTACCTACGTCGTTCAGAGGAGCAC
ACACAGGAGCGCCCTGCTGCTGCAATTGGATCGCCCAGAAAGCGACCGAT
GGAGCTTCAAAATGTCAGCAGCACAGCAGCGGGGGACTTGAGCCCTGCAG
GACAGGATCGGCCAGGGCTCTTGTCAGGTAGACTGGCAGAGGAGCGGGCA
GGGGAGAAGGGGAGAATCATAACGAGGGAGGAGAGCAGCCTGGGAAGTGC
GCGCTTGCCCTTCACGGTCCGAGGAGACTTCTTCCAGCTCAAGGAAATCG
ATTTGG
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Synonyms
Publications