rna2613, rna2613 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2613
Unique Name	rna2613
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1801
Alignment location	CM002459.1:795712..797587 -

Link to JBrowse

Properties


Property Name	Value
Product	sugar phosphate exchanger 3
Orig transcript id	gnl\|cribi\|Naga_100044g26.1072.mrna
Orig protein id	gnl\|cribi\|Naga_100044g26.1072
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:795712..797587 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100044g26	gene2499	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28058.1	cds2605	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2613	rna2613-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:795712..797587-
coding sequence from alignment at CM002459.1:795712..797587-

mRNA sequence

>rna2613 ID=rna2613|Name=rna2613|organism=Nannochloropsis gaditana|type=mRNA|length=1801bp
TACCTTTCAGCCAGGCACCCCGGAGGGAAATGCGCACTGATTAGGCTGCC
ATCAATGCGCATGGCATCACCTTGGCGTGGCGAGATTTATGGCTTCAAAA
TGTAGATATGAAACCTGCGTGCAAAGGGGACGCTTTTTGTGCGGTTTAAA
TCGTTATAGTGGACGTCGAAAAGATGACACCTGGGGGTGCGTGCCCCATC
CTCATCGACAGGCGGCAAGTTTCCTGATGTCCAGTCCATTGAACATCTTG
CTGGGTTTTTCTATGATTCCCTTGCGTTTTGTCATTTTGACTCCTACATA
CACATTCTCATATGTAGCCACAAGCTGTCCATTAAACATGGAAGAGGAGG
AGAAATGGCGACGGACTCATGCTCTAAACTCAAGCTTCCGTGGAGGGAGC
AGCAGGCTGGCCCCTTCACATCAAAACCATCATCACCACCCATTTTTCCA
TCACCACCACGCATCGTCGCCCTTCAGCAACAGCAGTGTCCGTTTAGCTG
CGGGCTCTCCGCATTCGTGCCGAGCGCCCTTCAGCTCCCCACCACCTTCC
CTTCACCCGCCATTTTCCTCTTCCCATGGCTCTAGCATGCGTGGACACCA
TATGGATATAGCTCGTCAGGAGCGATTCAAGACCCGTCACGTCGGCCCCC
TGGAGCTTATGCAGCTGCCCACAACGCTGTACAAGGAGCTGATGGTGCGT
AGGCGTCGCGAGCGTCTGCAACGGGAAATGGGTGTGAGTGTTATGCTTGA
CGAAGATGACGAGGAGGCAATTTTCGTGTTCGGGGAGGGGGAGGCCGCCT
TCGAAGGGGAGGAAAGATGGGAAGATGATGAGGCGGGAGGGGAAAGGCAC
TTATGTGTGATTTGCTTGGAGGGTTTCACGCCTTGGGATCGAGTGCGGGA
GCTACCTGCATGTCCACACATCCACCATCAACGCTGCTTGGACATCTGGC
TCCGGGGCGCTGCTTCCTACGAAGCCTGTCACACTCGCAGCTGTCCAACA
TGCAAAACTCCCATCTCTTTTTCCGCTTCTTCCACGCCTACCACGCCTTC
GGCAGCTGTGGAAGTTGCCGAGGAGGAAGAAAAGATGGGTGCGAAGACGG
ATACGGTCAGCTCGCCGCGCTCCATATTATCCAATATCTTCGAAATTCCT
CGCTGGGCATACGCGAGGGCGGGTAATTCTCTCATGCAAGACGCACAACA
CCGGCAGCTGTAGGTGCAAGTCACAGTATCTAGACTGCTGTTCGCTTGAA
TAGCAATCATACCTCCAAGTGCGACAAAGCTACATTCCGCCTCAAGAAAA
GCCGCACACAACTCGCATGTAAGGAACAGATAGGGGATTCTTCCGAATAC
CCCGCCAAAAAGCTGGCGCCTTTTCAGCATAAAACGATACTCAAGGTGAC
AATGGCAGCCTTTCGTCATTGGAAAAAAAATAAGATGTGTCCAGTAGCTT
GCGTGTTTAGAGAGGGATATCACGGCCGATGCATGTGTGGAAAGTTCGTA
GCAAGTGAGCCGTTCACAGGACATCGGGGAGTGGACAAAAAGCGTACTTT
GTTGCGCATGTAAATGTGTGTACAGGGGTCCACCGTTTGGACTCACGAGT
TGTATGTCGTGTTAAAAAAGGTATCAAATTGGCAAGAACGTGAAAAATAT
AAGAGGGGTACGCAAATCCAAAAATAAGAGACTCGTGTGAAGACAGGGCT
GTCGAAGAAGTGGAAGCTAACTCAAAGAGCAACACATCATGGTATAAAGG
GATCAATAACGTGTCAGAAAATCATGAAAATCATATGCACATGTCAATAT
T

protein sequence of rna2613

>rna2613-protein ID=rna2613-protein|Name=rna2613|organism=Nannochloropsis gaditana|type=polypeptide|length=551bp
MRPNVHASEWRRAPPWPLSNQNAVFALTFLVWVTVHAGRKSYSIVKPVLV
DMAWFGTNTSTKASYPDTSFFLFYALGCGFGKVNDAMDPRLVITSALLGA
ALLLVCLALADFGNVHDLGIFCLLWGLQACVQALAWPGCIAVLGEWFHSK
RRAAVMGLWCVANNVGNLLGASVGEVAVAVAGDERWGAVLVANAILMLVV
PAVVFLHLEPFPPPPTVLDLSPTSDPCQGASREKGQKEGARTRRDWQAGR
AEGREGDREAPPDKDRRDTHCAVKASDSSSPVVDDSLFSEEGSRTLLHPL
LDSDDEASPSPVLTPRPSVLPPVGLARALCTPGVLEVGLSYACLKGGAYA
FVFWLPTMLASGGWGLNAKQANAWAMLFDLGSILGSVAVGALAARVRRPI
AVYFVSILGSTLPTYLLGRLPHEQQTSRVLALLLLLVGFFSAAPQYLLVT
SVAQDLGQSPDLKGSRRAIATMTGVIDGVGSLGAACVQVLVGHLAHCTSE
ADAGVEGAARTHLTSCDLKEVYYFLTAIAFLGALMLSRLLLREVRSGAWR
A

mRNA from alignment at CM002459.1:795712..797587-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2613 ID=rna2613|Name=rna2613|organism=Nannochloropsis gaditana|type=mRNA|length=1876bp|location=Sequence derived from alignment at CM002459.1:795712..797587- (Nannochloropsis gaditana)
CGAACAGGCAACAAATTCAGGATGCCGCGAGCATGGAACGCACTGCCCTT
CAGCTGCGATTGAGTGCTTAAGCCGCACCGTGCGTGCATCCATGCGGCCT
AATGTCCACGCCAGCGAATGGCGACGGGCGCCACCATGGCCTTTGTCAAA
CCAAAACGCTGTTTTTGCCCTCACATTTCTGGTCTGGGTCACAGTACACG
CCGGCCGCAAGTCTTATTCAATCGTCAAACCGGTACTCGTGGACATGGCC
TGGTTTGGCACCAACACTTCTACAAAGGCATCGTATCCTGACACGTCTTT
CTTCCTCTTCTATGCGCTGGGCTGCGGATTCGGCAAAGTGAACGACGCCA
TGGATCCCCGTTTGGTCATCACTTCGGCGCTTCTGGGGGCGGCATTGTTG
CTAGTCTGCTTGGCGCTGGCAGACTTTGGGAATGTTCATGATTTGGGCAT
TTTCTGCCTATTGTGGGGGTTGCAGGCTTGTGTTCAGGCCTTAGCATGGC
CGGGTTGCATCGCTGTGCTGGGAGAGTGGTTTCATTCCAAGCGTCGAGCC
GCAGTGATGGGCTTGTGGTGCGTAGCCAATAACGTGGGCAATCTATTGGG
CGCCAGTGTCGGAGAGGTGGCGGTGGCGGTCGCAGGAGACGAACGATGGG
GTGCTGTCCTTGTTGCGAACGCGATCTTGATGCTGGTGGTCCCTGCCGTG
GTGTTTCTGCACCTGGAGCCCTTCCCCCCTCCGCCGACGGTGCTGGACCT
ATCGCCTACATCGGACCCATGTCAGGGTGCAAGCCGTGAGAAGGGGCAGA
AAGAAGGCGCACGAACAAGGAGGGACTGGCAGGCGGGACGCGCAGAGGGT
CGAGAGGGGGATCGTGAGGCGCCACCTGACAAAGATCGCCGGGACACTCA
CTGCGCGGTCAAAGCCTCGGACTCTTCGTCGCCCGTGGTTGATGACAGCC
TCTTTTCCGAAGAAGGAAGCAGGACCTTGCTCCATCCCCTCCTCGACAGC
GACGACGAGGCATCTCCGAGCCCTGTCCTAACGCCGCGGCCCTCCGTCCT
CCCGCCCGTTGGCCTCGCACGGGCGCTCTGCACACCCGGGGTCCTGGAAG
TAGGGCTTTCCTATGCCTGTCTCAAGGGCGGCGCGTACGCTTTCGTCTTC
TGGCTACCGACCATGCTCGCCTCGGGCGGGTGGGGCTTGAACGCCAAGCA
AGCCAACGCTTGGGCCATGCTCTTCGACCTGGGCTCCATCCTGGGTTCCG
TTGCGGTCGGTGCTTTGGCCGCACGGGTGCGCCGTCCCATCGCGGTCTAC
TTCGTGAGTATCTTGGGCTCGACGCTTCCCACCTACCTTCTCGGGAGGCT
CCCGCACGAGCAGCAGACTTCGAGGGTCTTGGCGCTGCTCCTTCTCCTGG
TTGGCTTCTTTTCGGCCGCGCCGCAATACCTGCTGGTCACGTCGGTGGCG
CAGGATCTCGGTCAAAGCCCAGACCTGAAGGGGAGCAGGCGGGCCATCGC
CACCATGACGGGCGTGATCGATGGAGTCGGCTCGCTCGGAGCCGCATGCG
TGCAGGTCCTGGTCGGCCACTTGGCGCATTGTACGTCAGAGGCGGATGCC
GGCGTTGAGGGAGCGGCTAGGACACATTTAACCTCATGCGACTTGAAAGA
GGTCTACTACTTCCTGACAGCGATCGCCTTCTTAGGCGCGCTCATGCTGT
CCCGCTTGCTTTTGCGAGAGGTGCGGAGCGGCGCCTGGAGGGCCTGAGGG
CGGGGGATTGATCGATATTCCCCAGTGACCAATGTAAATTTACATTTGAC
AAAAGAGCCCAGCCCATAGGCATAGCGTTTGTTTACAAAGCACAAATATA
AAGAAAAAGTACTTGTCCAAAGCTCG

Coding sequence (CDS) from alignment at CM002459.1:795712..797587-

>rna2613 ID=rna2613|Name=rna2613|organism=Nannochloropsis gaditana|type=CDS|length=1656bp|location=Sequence derived from alignment at CM002459.1:795712..797587- (Nannochloropsis gaditana)
ATGCGGCCTAATGTCCACGCCAGCGAATGGCGACGGGCGCCACCATGGCC
TTTGTCAAACCAAAACGCTGTTTTTGCCCTCACATTTCTGGTCTGGGTCA
CAGTACACGCCGGCCGCAAGTCTTATTCAATCGTCAAACCGGTACTCGTG
GACATGGCCTGGTTTGGCACCAACACTTCTACAAAGGCATCGTATCCTGA
CACGTCTTTCTTCCTCTTCTATGCGCTGGGCTGCGGATTCGGCAAAGTGA
ACGACGCCATGGATCCCCGTTTGGTCATCACTTCGGCGCTTCTGGGGGCG
GCATTGTTGCTAGTCTGCTTGGCGCTGGCAGACTTTGGGAATGTTCATGA
TTTGGGCATTTTCTGCCTATTGTGGGGGTTGCAGGCTTGTGTTCAGGCCT
TAGCATGGCCGGGTTGCATCGCTGTGCTGGGAGAGTGGTTTCATTCCAAG
CGTCGAGCCGCAGTGATGGGCTTGTGGTGCGTAGCCAATAACGTGGGCAA
TCTATTGGGCGCCAGTGTCGGAGAGGTGGCGGTGGCGGTCGCAGGAGACG
AACGATGGGGTGCTGTCCTTGTTGCGAACGCGATCTTGATGCTGGTGGTC
CCTGCCGTGGTGTTTCTGCACCTGGAGCCCTTCCCCCCTCCGCCGACGGT
GCTGGACCTATCGCCTACATCGGACCCATGTCAGGGTGCAAGCCGTGAGA
AGGGGCAGAAAGAAGGCGCACGAACAAGGAGGGACTGGCAGGCGGGACGC
GCAGAGGGTCGAGAGGGGGATCGTGAGGCGCCACCTGACAAAGATCGCCG
GGACACTCACTGCGCGGTCAAAGCCTCGGACTCTTCGTCGCCCGTGGTTG
ATGACAGCCTCTTTTCCGAAGAAGGAAGCAGGACCTTGCTCCATCCCCTC
CTCGACAGCGACGACGAGGCATCTCCGAGCCCTGTCCTAACGCCGCGGCC
CTCCGTCCTCCCGCCCGTTGGCCTCGCACGGGCGCTCTGCACACCCGGGG
TCCTGGAAGTAGGGCTTTCCTATGCCTGTCTCAAGGGCGGCGCGTACGCT
TTCGTCTTCTGGCTACCGACCATGCTCGCCTCGGGCGGGTGGGGCTTGAA
CGCCAAGCAAGCCAACGCTTGGGCCATGCTCTTCGACCTGGGCTCCATCC
TGGGTTCCGTTGCGGTCGGTGCTTTGGCCGCACGGGTGCGCCGTCCCATC
GCGGTCTACTTCGTGAGTATCTTGGGCTCGACGCTTCCCACCTACCTTCT
CGGGAGGCTCCCGCACGAGCAGCAGACTTCGAGGGTCTTGGCGCTGCTCC
TTCTCCTGGTTGGCTTCTTTTCGGCCGCGCCGCAATACCTGCTGGTCACG
TCGGTGGCGCAGGATCTCGGTCAAAGCCCAGACCTGAAGGGGAGCAGGCG
GGCCATCGCCACCATGACGGGCGTGATCGATGGAGTCGGCTCGCTCGGAG
CCGCATGCGTGCAGGTCCTGGTCGGCCACTTGGCGCATTGTACGTCAGAG
GCGGATGCCGGCGTTGAGGGAGCGGCTAGGACACATTTAACCTCATGCGA
CTTGAAAGAGGTCTACTACTTCCTGACAGCGATCGCCTTCTTAGGCGCGC
TCATGCTGTCCCGCTTGCTTTTGCGAGAGGTGCGGAGCGGCGCCTGGAGG
GCCTGA

Synonyms

Publications