rna2607, rna2607 (mRNA) Nannochloropsis gaditana

Overview
Namerna2607
Unique Namerna2607
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length924
Alignment locationCM002459.1:772220..773561 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100044g32.1085.mrna
Orig protein idgnl|cribi|Naga_100044g32.1085
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:772220..773561 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100044g32gene2493Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2607rna2607-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28071.1cds2599Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2607 ID=rna2607|Name=rna2607|organism=Nannochloropsis gaditana|type=mRNA|length=924bp
ATGAGAATACGCCGCGAGCCCCTCCGGCTTGCGGCATTTCTAGTTATTGT
AGTGGCTACAGGCATATGCTTGTCGCCTGTCGCTGCTTTCCGTCCAATTT
ATCCCCTCCTTCAGAGTCCGCGACCATGGGGCCTTCAAAACTCGCCTGAA
ACAGAGTCGTTCCTGGCACTTGTGCTGTCGCGAGACCTTGCGACCGCAGG
CTCTCGTGAAGATCCGCACTCTGTCAGACCTAAGTACCGAATCTTCTCTT
TGGTGCGACTCGCTGGCACCAAAAGTCTGGACTTGGAGGCCGAAACCTCG
TCTGAGGCCTCCCTCCCTTTGTGGGAGGTTATAAGGGAACTCGGCCAACG
CCAAGTGGACTTCAATGTCCTGCAGCCCAGGGAAGAGCTTGACGCCCTCC
TATACCAGGCACGTCTTGGAAAGGTAAATACGAAAAGCGAGAGGGTGGCG
TCGACTGGGACCGCGAGCTCATCAAGGCCTCTCCCAGGCGCGACGGAACG
GAAAGAGGAAGCTGTCGCTCTGGCGTCGCAGGCAAAAAATGTCTCCCAGA
CACCACCACGAGGCGATTTGGAAGCCCGCCTTCCGTCCGTTTCGTTTGCG
CCACCGTCTCTGGCGCCATTGCCGGTCCTCTCCGCCTCGGAGGCCGGGAC
AGCCTCCACCGGCCCATTGACCAGGCGCCCGCCTCCCCCCCCCAGCGTGG
CTGCTGCCGCCCTCCCTCGCTTCCATTCGATCGCCGACGCCTTGGCCTGG
GCAGGAAGCCTGTCCAAGGAGGAGATCGTGGTTGAGTTGGAATTTTTGCG
CGTGAGAGGGCCGTTAGGGGAGGGGACAGAGAAGCGGTTGCTCTTCCTGT
GTACATACGGGACCCGAATATGGGGTCAACGTGTATGGATGCTATTTTGT
AAGCGAGGCAAAGACAGTGTGTAA
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protein sequence of rna2607

>rna2607-protein ID=rna2607-protein|Name=rna2607|organism=Nannochloropsis gaditana|type=polypeptide|length=136bp
MFVFWFHCEHGTVLFTCFFSLLTSCCLHFSLTAYPKLPFARRTSTRTTFP
IHFSYSASSFGSFSSASSSHNASNPQKPSPPVSWTSIADEEVNEFRSNPR
LCFRLVNETLWFTLSRFVPALLPVVLLPRPAWPSPC
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mRNA from alignment at CM002459.1:772220..773561+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2607 ID=rna2607|Name=rna2607|organism=Nannochloropsis gaditana|type=mRNA|length=1342bp|location=Sequence derived from alignment at CM002459.1:772220..773561+ (Nannochloropsis gaditana)
CGACCTGGACTCAAAATCATATAACAAGATGGGAACTAGTCCAATCTGAG
ACCGATTAAAACAACAAAATTTAGGGCGTGTAAGGGCCACGGAGGCTCCT
GGTGTGTTTTTTAAGGCTATACGACAAGTGATTGAGTTGCCTGGCCTACG
GAACCAGAGAGCTCAGTGCGACCGTCGCACAAGGGCACGGGTCGGAGCGC
CTGAGCGCTTTTGTCTTCCTTTCATTATTTCAGAGGAAAATCTTTCTGAA
AGCTTGTTTTTCGATTAATGTTGGGTATCAGTCCGATTTTGTGTGCATAT
GTTTGTTTTCTGGTTCCATTGTGAGCATGGCACAGTATTGTTCacttgtt
ttttttccctcttaaCCTCCTGTTGCCTTCATTTCTCACTAACTGCTTAT
CCTAAACTTCCTTTTGCTCGACGGACCTCCACTCGAACCACATTTCCAAT
ACATTTTAGCTATTCAGCGTCCAGCTTcggctccttttcctccgcaaGCT
CATCCCATAACGCATCAAACCCTCAGAAGCCCTCACCACCTGTCAGCTGG
ACGAGCATCGCGGATGAGGAAGTCAACGAGTTTCGCAGTAATCCGCGTCT
GTGCTTCCGCTTGGTCAATGAAACTCTCTGGTTCACCTTAAGTAGGTTTG
TGCCGGCACTGCTGCCGGTCGTACTGTTGCCCCGCCCGGCATGGCCCTCT
CCGTGCTGAATGGTATGCGAGAACCCCCCGCCTGCGATCCATTTTTGGCA
TTTTATGCAGGTATCACTCGTCCTTGTGGTCCTTTAGCGTGCTGCAGAGG
TAGGCAGAGTATCGAAGCGACCGATGCCATGTCCCTCCAGCGTGCTGCAT
GTGGGCGAGAGGCTGAGCGAAGGCGAAAAATATCGGTAACCTCTTGAGGG
TTCCGGATGTGTAGTGGTgcccgcccgctcctcgcGCTCCGACGAGAGAG
GCCtctggagaagggaggcaggaggcggcgggtcAGAAGCCTTTGCATTC
TCgcgcaggaagaggggaaggtctCGAGGAatggcaggaaagaggaaaag
agagaatcCGGTTGCGGTGTCCACCGCGTGTATGTTTCCGACTGGCGGAC
TGGAACAGACTGGGGGTCAGACAGTGATTGCAGCGGATGTGGAGGGATCG
TCTGACGAAGGCGGCGAAGCCTGCGACGGGGGGGGCTAGTCGTGTGCCTA
GGATGCTCTGTGCGTGGGAAGGCCCCGTAGGGAAGTGACTTCTGCACACG
ACGCGAAAAGCAAAGAACAAGTGGATAATGCGTGGTGACCGACGACGGGA
CACCGCAAGCGTTCTTCATGGCGCGTATGGTGACCTTGCTCG
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Coding sequence (CDS) from alignment at CM002459.1:772220..773561+

>rna2607 ID=rna2607|Name=rna2607|organism=Nannochloropsis gaditana|type=CDS|length=411bp|location=Sequence derived from alignment at CM002459.1:772220..773561+ (Nannochloropsis gaditana)
ATGTTTGTTTTCTGGTTCCATTGTGAGCATGGCACAGTATTGTTCacttg
ttttttttccctcttaaCCTCCTGTTGCCTTCATTTCTCACTAACTGCTT
ATCCTAAACTTCCTTTTGCTCGACGGACCTCCACTCGAACCACATTTCCA
ATACATTTTAGCTATTCAGCGTCCAGCTTcggctccttttcctccgcaaG
CTCATCCCATAACGCATCAAACCCTCAGAAGCCCTCACCACCTGTCAGCT
GGACGAGCATCGCGGATGAGGAAGTCAACGAGTTTCGCAGTAATCCGCGT
CTGTGCTTCCGCTTGGTCAATGAAACTCTCTGGTTCACCTTAAGTAGGTT
TGTGCCGGCACTGCTGCCGGTCGTACTGTTGCCCCGCCCGGCATGGCCCT
CTCCGTGCTGA
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Synonyms
Publications