rna260, rna260 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna260
Unique Name	rna260
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1645
Alignment location	CM002455.1:654537..657939 -

Link to JBrowse

Properties


Property Name	Value
Product	Protein kinase, catalytic domain protein
Orig transcript id	gnl\|cribi\|Naga_100026g56.10668.mrna
Orig protein id	gnl\|cribi\|Naga_100026g56.10668
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:654537..657939 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g56	gene249	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30414.1	cds260	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna260	rna260-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:654537..657939-
coding sequence from alignment at CM002455.1:654537..657939-

mRNA sequence

>rna260 ID=rna260|Name=rna260|organism=Nannochloropsis gaditana|type=mRNA|length=1645bp
CGACTTCCTGCTCGCCGAGTCTTCCTCGCCTGTTCCAGTCGCTGCTTGCT
CGACCTCCTCAGCTACACTTCCTTCAAGCCCCGAGACCCACTGCAAACAT
TTCATGCGCTATTCTAGCAGCCACGATCACCTTTATGCCCTCTCAAACTA
TCAATGGCAACTCGTTGAACTGTTATCCGCAGTTTTAAAACGAAAGCAGG
CCTATTTGCCCTTCGCTCCCATAGCCGGAGGATTATGTTGCCAACACGTC
TCGCCGGCATAGCGGCCCGCCGCGCTTTTTTAATGCAGCGACATATCCCA
AGCAATGCAAATACAACGGCTATGAGCGCTACGGTGCGATGGATTCATCG
TAGCCAGGCTGCTTTAAGTCATGACGACAGCAAGCCCGACCCCGTGGCCA
ACGCGGAGGGCTTTGACTTCAATCGCATTGGTCTCGTGGGGGGGGGGAAG
ATGAGCGAGGCTATAATTGAAGGATTCGTTACAGAAAAGCTTATTCAGCC
GGAAAAGATTTCGGTGTATGATGTGAGCCGCAAGCGGCTTGATTACTTGA
TGAAAACATTCGGCGTGCAGGCTTCTTCCTCCTTGGCTGCTGCCTGCAAA
GACTCGGACCTGGTAATCATCGCCGTCAAGCCGCAAAATTTGACGCAGAA
GCTGTGGACGCAATTGCGTGCCAATCTTGACCCGAAGTCGGTTGTTCTCA
GCATCGTAGCGGGTATTCCAATGTCAAACTTCGTGGAGAGCACGGGGAAC
AAGCGCGTGGTGCGGACCATGCCCAACACCCCGGCCACCATCCAGCAGGG
AATGACCGTGTGGGCCTGCACTGATCACGTGAGCGTGTCCCAGCGGAATT
CCGTGGCCAAGTTTCTCTCCTCCCTGGGCGAGCAGCACTTCGTTCACGAT
GAACAGTACCTGGACATGGCGACGGCGGTCTCAGGCTCGGGCCCGGGCTA
CGTGTTGTTGATCCTGGAGGCACTTATCGACGCTGCGGTGCACCTTGGAT
TTGCCCGCAACGTGGCCTCCAAGCTGGTTCTTCAAACTGTGTCGGGCACG
ACGACACTCGCCATGAAGAGTGGCCTGCATCCGGCTATCCTCAGGAACAG
CGTCACGAGCCCGGGGGGCACTACTGCCTCCGCTTTGTACGTGCTGGAGC
AGGGGCGGTTTCGAACGGTGCTGGCGGATTCCTTCTGGAGTGCGTACCGG
CGATCGTTGGAATTGGGTCACATGGACAGCAATGTAGGACCGGGTAGGAG
TAGGCACGACGCGCACGAAACCGACAGTCATAAGAAGTAAAAGGAGCTTG
GAAAGGGCGTGGGCAGAGCGCGAGGAAGCATGGCGGGTGCGGAGACTGAG
CGGGAACGAAGTTTCCGGGAGCGTGCGCACATGACATTGCGGTGACATTC
ACGAGGTCAATTTAAATGTGGCGATGAGGATGGCAGGAGCAGGCGCGCAG
AGTGACTCCCATAACATAAAATCGGGCGAAATGTGGCGATTTTTTTCGGC
TCTGGTGCAAAGTAAAATTATATAGGGTACTAGTTATAGTCGAGACTTTT
GCGTTCATGCTCTCATGTGCACTTGCGTTAGTTGCGTCGGACTCTTCGGA
TATGTAACAGTTAGATTTGAATAAAAGGTTTAAAAGTGGCAGCTG

protein sequence of rna260

>rna260-protein ID=rna260-protein|Name=rna260|organism=Nannochloropsis gaditana|type=polypeptide|length=1046bp
MAVRKKRVRRGMKPRLPPRFPQATYHGQHRQQEDSMNVTSAVMNRLKLSG
DKSLASPSSSTSPRSASASPFSSSVASSHSSSYYSSTEDDEGEEGYRPGG
YHRVQIGDVYNKGRYLVVKKLGWGHFSTVWLARDLHVLKAARQTDQGKLK
ETSTQEEYVALKVQKSAQHYREAAYDEIELLTAVNSAGMLLEGHDSKDDS
RRVVRLLEHFEIRGPNGRHVCMAFEVLGCNLLSVIKQTEYRGLPLPLVKS
IARQVCQGLDFLHRRCRIIHTDLKPENILIELPLQLGPEERAVRPGRGLA
YAGSPTGENGKSSGRKGAAETKGVGEIKSEGGVDLSNLAPEEKKRMKKKL
QKKRQKARKKGLSMMTEEGWSEEERNGHAGRESIKSGDASSCDQEDRAMK
GEAMGDGVEGQGRGFAEPVLPPGSCSGEEDWRRLLRYNEEPCRSNIYGPE
QAPSVSLPASRSKTVGEISELPSPHFSDARLEVLPQEAWSDSQERRKVTM
VVSADKLQRAFAMEDARWQEAWGHKGASCPEKGDAVIRGWHFCFHTRSHP
VNGETEDMIADKVAFWVEPLDEKVDLPALKMAFLRFQDEDGRRDTAAGCA
HTGDLFENDGQKRWNVHYSTMHTGVVLEFLEHRVPGLRFLSILPEAFPSL
TCGLSDSSKFKESNEAEASEWGLLCHQRQEEQNTIHLSRGAHMQLEGGKE
SEAPIVLVGLDMGAILAGLRIQDGRMLIEMVNFIPLQRRLEVLFNGCVGG
RDKKADKDVARLESAPLVASSEDRPVPSSDGPFARPSPVAIDLEQLVGSR
VVVVDLGNACWTHKHFSEDIQTRQYRSPEVLIGSKYDTSADMWSMACLIF
ELMTGDLLFNPRAGENYGRNEDHLAQMMELLGKYPKRLATAGRYSREFFN
RKGELKHIHSLKYWSLEEVLREKYRFSQNEARAAADFLVPMLDFNPQRRA
TAQQCLAHPWLASLDAGDSKLPSRYPLANAASPKIAQGLPSTIQANVPSP
AARAIGEQVMGQIEEDDTVALEAAAVAMGNELLTEAENGPLSRALE

mRNA from alignment at CM002455.1:654537..657939-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna260 ID=rna260|Name=rna260|organism=Nannochloropsis gaditana|type=mRNA|length=3403bp|location=Sequence derived from alignment at CM002455.1:654537..657939- (Nannochloropsis gaditana)
TGCGCTAATCAAGTTTCACGTATAGAAATTTGACCTTGCGTGGATCCCTC
GATACTTTCGTCTTCCATAATAGTTCGCATGGCGGTCAGGAAGAAGCGTG
TCCGTAGGGGCATGAAACCACGCCTGCCACCGCGGTTCCCTCAAGCTACT
TATCACGGACAACACCGACAACAAGAAGATAGCATGAATGTAACTTCAGC
TGTCATGAACAGGCTAAAGCTAAGTGGTGACAAATCCTTAGCGTCCCCTT
CGTCAAGCACTTCCCCGAGGTCTGCGTCCGCTTCTCCCTTCTCGTCATCC
GTTGCGTCTTCTCACTCTTCCTCCTATTATTCGTCAACCGAAGACGACGA
AGGAGAGGAAGGGTATAGACCAGGCGGGTATCATCGTGTGCAGATCGGCG
ATGTCTATAACAAGGGGCGCTACTTGGTCGTGAAGAAGCTAGGGTGGGGT
CATTTCTCCACGGTCTGGCTTGCACGCGATTTGCATGTTTTGAAGGCCGC
GAGGCAAACTGATCAAGGCAAATTAAAGGAAACTTCCACACAGGAAGAAT
ATGTGGCGCTGAAGGTACAGAAAAGTGCACAGCACTACCGAGAAGCGGCG
TACGATGAGATCGAGCTGCTGACTGCTGTAAATAGTGCTGGGATGCTTTT
GGAGGGACATGATTCCAAAGATGACAGCCGGCGCGTGGTTCGATTATTGG
AGCATTTTGAGATTCGAGGCCCGAATGGGCGCCACGTGTGTATGGCCTTC
GAGGTTCTAGGCTGCAACCTACTGTCTGTGATCAAGCAGACAGAGTATCG
CGGTCTCCCTCTCCCGCTAGTGAAAAGCATAGCGCGACAAGTTTGCCAAG
GTTTGGATTTTCTACACCGCCGTTGCCGTATCATCCACACAGATCTTAAG
CCAGAGAACATTTTGATCGAGCTGCCACTGCAGCTGGGGCCGGAGGAGAG
GGCCGTGCGGCCGGGTCGGGGGCTGGCGTATGCGGGTTCCCCTACAGGCG
AGAATGGGAAGTCGTCAGGGCGCAAAGGAGCGGCCGAGACAAAAGGCGTG
GGTGAGATAAAGTCGGAGGGTGGAGTTGACTTATCGAACTTGGCGCCTGA
GGAGAAGAAAAGAATGAAAAAGAAGCTGCAGAAGAAACGGCAGAAAGCCC
GGAAGAAAGGACTGTCGATGATGACGGAGGAAGGATGGAGCGAGGAAGAA
AGAAATGGACATGCGGGTAGAGAGAGCATTAAGAGCGGTGATGCAAGCTC
TTGCGACCAGGAGGACAGGGCGATGAAAGGGGAAGCGATGGGGGACGGCG
TAGAGGGGCAAGGCAGGGGCTTTGCCGAGCCTGTACTACCGCCTGGAAGC
TGCTCAGGGGAGGAGGATTGGAGAAGGCTGCTTCGGTACAACGAAGAGCC
TTGTCGCTCCAATATTTATGGCCCAGAGCAGGCTCCTTCTGTGTCTTTGC
CCGCATCACGCTCAAAGACAGTCGGGGAGATAAGCGAGCTGCCGAGCCCA
CACTTTTCTGACGCGAGACTGGAAGTGTTGCCCCAGGAGGCATGGTCGGA
CTCACAAGAAAGGAGAAAGGTCACGATGGTAGTGTCGGCTGACAAACTGC
AACGCGCTTTTGCCATGGAAGACGCGAGATGGCAAGAGGCCTGGGGTCAC
AAGGGGGCTTCGTGTCCGGAGAAGGGAGATGCAGTGATACGGGGATGGCA
CTTCTGCTTTCACACGCGCTCGCACCCGGTAAATGGTGAAACAGAAGACA
TGATAGCGGATAAAGTCGCTTTTTGGGTCGAACCTCTTGACGAGAAGGTA
GACTTGCCGGCCTTGAAAATGGCTTTTCTGCGATTCCAGGACGAAGATGG
GAGGCGAGACACCGCCGCTGGCTGTGCTCATACGGGCGATTTGTTTGAAA
ATGATGGGCAAAAAAGGTGGAATGTGCATTACAGTACAATGCACACAGGA
GTGGTGCTGGAATTTCTGGAGCACCGTGTCCCGGGACTGAGATTTTTAAG
CATCCTCCCTGAGGCCTTTCCATCTCTGACATGCGGTTTGAGCGACAGCA
GCAAATTCAAGGAGTCAAACGAGGCCGAAGCAAGCGAGTGGGGTCTACTT
TGCCATCAAAGACAAGAAGAACAAAACACCATACATCTTTCCCGAGGCGC
CCACATGCAGCTCGAAGGGGGAAAAGAAAGCGAAGCACCAATTGTGCTGG
TAGGCCTGGATATGGGCGCGATCTTAGCTGGGCTGCGAATACAGGATGGC
AGAATGTTGATTGAGATGGTGAATTTTATTCCACTGCAACGTCGCTTGGA
AGTCCTTTTTAATGGCTGTGTGGGAGGACGCGACAAGAAAGCGGACAAGG
ATGTAGCCAGGCTTGAAAGCGCTCCTCTTGTAGCCAGCAGCGAGGACAGG
CCTGTGCCCTCTTCTGATGGTCCTTTCGCTCGTCCTTCACCTGTGGCAAT
AGACTTGGAGCAGCTGGTTGGGTCCCGTGTTGTTGTAGTTGATCTGGGGA
ACGCGTGCTGGACGCACAAGCACTTCTCGGAGGATATCCAGACGCGGCAG
TACAGATCGCCCGAAGTCTTGATAGGAAGCAAGTACGACACAAGTGCAGA
CATGTGGAGTATGGCTTGTTTGATCTTTGAGCTTATGACTGGGGACTTGC
TTTTTAATCCACGGGCAGGGGAGAATTACGGCCGGAATGAGGACCATCTC
GCGCAGATGATGGAGCTGTTGGGAAAATATCCAAAGAGGCTTGCCACGGC
CGGTCGGTACTCCCGAGAATTCTTTAATCGGAAGGGTGAATTGAAACACA
TTCATTCCCTTAAATACTGGAGTCTGGAGGAGGTGTTGCGTGAAAAGTAC
AGATTTTCCCAGAACGAAGCACGGGCGGCTGCTGATTTTTTGGTCCCAAT
GTTGGATTTCAACCCGCAACGCCGTGCTACCGCTCAACAATGCTTGGCCC
ATCCCTGGCTCGCATCGTTAGACGCTGGTGACAGCAAGCTCCCATCGCGA
TATCCTCTGGCCAATGCAGCATCTCCTAAGATCGCACAAGGGCTTCCATC
GACAATTCAGGCAAATGTGCCAAGTCCTGCGGCTAGGGCAATCGGAGAGC
AGGTGATGGGGCAGATTGAGGAGGACGACACAGTGGCCTTGGAAGCAGCA
GCTGTGGCGATGGGCAACGAGTTATTGACAGAGGCAGAGAATGGGCCGCT
AAGTAGAGCACTGGAATGAGACAGTAGAGGCCCCTTCACGCATCTTTTTT
TTCCAGCTGCCACTTTTAAACCTTTTATTCAAATCTAACTGTTACATATC
CGAAGAGTCCGACGCAACTAACGCAAGTGCACATGAGAGCATGAACGCAA
AAGTCTCGACTATAACTAGTACCCTATATAATTTTACTTTGCACCAGAGC
CGA

Coding sequence (CDS) from alignment at CM002455.1:654537..657939-

>rna260 ID=rna260|Name=rna260|organism=Nannochloropsis gaditana|type=CDS|length=3141bp|location=Sequence derived from alignment at CM002455.1:654537..657939- (Nannochloropsis gaditana)
ATGGCGGTCAGGAAGAAGCGTGTCCGTAGGGGCATGAAACCACGCCTGCC
ACCGCGGTTCCCTCAAGCTACTTATCACGGACAACACCGACAACAAGAAG
ATAGCATGAATGTAACTTCAGCTGTCATGAACAGGCTAAAGCTAAGTGGT
GACAAATCCTTAGCGTCCCCTTCGTCAAGCACTTCCCCGAGGTCTGCGTC
CGCTTCTCCCTTCTCGTCATCCGTTGCGTCTTCTCACTCTTCCTCCTATT
ATTCGTCAACCGAAGACGACGAAGGAGAGGAAGGGTATAGACCAGGCGGG
TATCATCGTGTGCAGATCGGCGATGTCTATAACAAGGGGCGCTACTTGGT
CGTGAAGAAGCTAGGGTGGGGTCATTTCTCCACGGTCTGGCTTGCACGCG
ATTTGCATGTTTTGAAGGCCGCGAGGCAAACTGATCAAGGCAAATTAAAG
GAAACTTCCACACAGGAAGAATATGTGGCGCTGAAGGTACAGAAAAGTGC
ACAGCACTACCGAGAAGCGGCGTACGATGAGATCGAGCTGCTGACTGCTG
TAAATAGTGCTGGGATGCTTTTGGAGGGACATGATTCCAAAGATGACAGC
CGGCGCGTGGTTCGATTATTGGAGCATTTTGAGATTCGAGGCCCGAATGG
GCGCCACGTGTGTATGGCCTTCGAGGTTCTAGGCTGCAACCTACTGTCTG
TGATCAAGCAGACAGAGTATCGCGGTCTCCCTCTCCCGCTAGTGAAAAGC
ATAGCGCGACAAGTTTGCCAAGGTTTGGATTTTCTACACCGCCGTTGCCG
TATCATCCACACAGATCTTAAGCCAGAGAACATTTTGATCGAGCTGCCAC
TGCAGCTGGGGCCGGAGGAGAGGGCCGTGCGGCCGGGTCGGGGGCTGGCG
TATGCGGGTTCCCCTACAGGCGAGAATGGGAAGTCGTCAGGGCGCAAAGG
AGCGGCCGAGACAAAAGGCGTGGGTGAGATAAAGTCGGAGGGTGGAGTTG
ACTTATCGAACTTGGCGCCTGAGGAGAAGAAAAGAATGAAAAAGAAGCTG
CAGAAGAAACGGCAGAAAGCCCGGAAGAAAGGACTGTCGATGATGACGGA
GGAAGGATGGAGCGAGGAAGAAAGAAATGGACATGCGGGTAGAGAGAGCA
TTAAGAGCGGTGATGCAAGCTCTTGCGACCAGGAGGACAGGGCGATGAAA
GGGGAAGCGATGGGGGACGGCGTAGAGGGGCAAGGCAGGGGCTTTGCCGA
GCCTGTACTACCGCCTGGAAGCTGCTCAGGGGAGGAGGATTGGAGAAGGC
TGCTTCGGTACAACGAAGAGCCTTGTCGCTCCAATATTTATGGCCCAGAG
CAGGCTCCTTCTGTGTCTTTGCCCGCATCACGCTCAAAGACAGTCGGGGA
GATAAGCGAGCTGCCGAGCCCACACTTTTCTGACGCGAGACTGGAAGTGT
TGCCCCAGGAGGCATGGTCGGACTCACAAGAAAGGAGAAAGGTCACGATG
GTAGTGTCGGCTGACAAACTGCAACGCGCTTTTGCCATGGAAGACGCGAG
ATGGCAAGAGGCCTGGGGTCACAAGGGGGCTTCGTGTCCGGAGAAGGGAG
ATGCAGTGATACGGGGATGGCACTTCTGCTTTCACACGCGCTCGCACCCG
GTAAATGGTGAAACAGAAGACATGATAGCGGATAAAGTCGCTTTTTGGGT
CGAACCTCTTGACGAGAAGGTAGACTTGCCGGCCTTGAAAATGGCTTTTC
TGCGATTCCAGGACGAAGATGGGAGGCGAGACACCGCCGCTGGCTGTGCT
CATACGGGCGATTTGTTTGAAAATGATGGGCAAAAAAGGTGGAATGTGCA
TTACAGTACAATGCACACAGGAGTGGTGCTGGAATTTCTGGAGCACCGTG
TCCCGGGACTGAGATTTTTAAGCATCCTCCCTGAGGCCTTTCCATCTCTG
ACATGCGGTTTGAGCGACAGCAGCAAATTCAAGGAGTCAAACGAGGCCGA
AGCAAGCGAGTGGGGTCTACTTTGCCATCAAAGACAAGAAGAACAAAACA
CCATACATCTTTCCCGAGGCGCCCACATGCAGCTCGAAGGGGGAAAAGAA
AGCGAAGCACCAATTGTGCTGGTAGGCCTGGATATGGGCGCGATCTTAGC
TGGGCTGCGAATACAGGATGGCAGAATGTTGATTGAGATGGTGAATTTTA
TTCCACTGCAACGTCGCTTGGAAGTCCTTTTTAATGGCTGTGTGGGAGGA
CGCGACAAGAAAGCGGACAAGGATGTAGCCAGGCTTGAAAGCGCTCCTCT
TGTAGCCAGCAGCGAGGACAGGCCTGTGCCCTCTTCTGATGGTCCTTTCG
CTCGTCCTTCACCTGTGGCAATAGACTTGGAGCAGCTGGTTGGGTCCCGT
GTTGTTGTAGTTGATCTGGGGAACGCGTGCTGGACGCACAAGCACTTCTC
GGAGGATATCCAGACGCGGCAGTACAGATCGCCCGAAGTCTTGATAGGAA
GCAAGTACGACACAAGTGCAGACATGTGGAGTATGGCTTGTTTGATCTTT
GAGCTTATGACTGGGGACTTGCTTTTTAATCCACGGGCAGGGGAGAATTA
CGGCCGGAATGAGGACCATCTCGCGCAGATGATGGAGCTGTTGGGAAAAT
ATCCAAAGAGGCTTGCCACGGCCGGTCGGTACTCCCGAGAATTCTTTAAT
CGGAAGGGTGAATTGAAACACATTCATTCCCTTAAATACTGGAGTCTGGA
GGAGGTGTTGCGTGAAAAGTACAGATTTTCCCAGAACGAAGCACGGGCGG
CTGCTGATTTTTTGGTCCCAATGTTGGATTTCAACCCGCAACGCCGTGCT
ACCGCTCAACAATGCTTGGCCCATCCCTGGCTCGCATCGTTAGACGCTGG
TGACAGCAAGCTCCCATCGCGATATCCTCTGGCCAATGCAGCATCTCCTA
AGATCGCACAAGGGCTTCCATCGACAATTCAGGCAAATGTGCCAAGTCCT
GCGGCTAGGGCAATCGGAGAGCAGGTGATGGGGCAGATTGAGGAGGACGA
CACAGTGGCCTTGGAAGCAGCAGCTGTGGCGATGGGCAACGAGTTATTGA
CAGAGGCAGAGAATGGGCCGCTAAGTAGAGCACTGGAATGA

Synonyms

Publications