rna2599, rna2599 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2599
Unique Name	rna2599
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1368
Alignment location	CM002459.1:759013..759497 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100120g5.6953.mrna
Orig protein id	gnl\|cribi\|Naga_100120g5.6953
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:759013..759497 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100120g5	gene2485	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2599	rna2599-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28092.1	cds2591	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:759013..759497-
coding sequence from alignment at CM002459.1:759013..759497-

mRNA sequence

>rna2599 ID=rna2599|Name=rna2599|organism=Nannochloropsis gaditana|type=mRNA|length=1368bp
CCCACTTCTCCTCCCGACACAGGGCAGCACACATGAGGAGACCAACTCTT
TCGTCATGGGTGGCGGTCAACGCGCTTGTCCTGCCTGCCGTCCACGCTTT
TTTCTCAGCGCCGCTTCGCAGCCTCAGTCCGCCACCCTGTAGAGCTTTAT
CTTCCTCCCCGTCATCGCGACTCCAGGCTGCCGCCACCGTGTCTCCCACG
CAAGCTTCTCCCAGTACAGCATCGCAGAACAGCGGCGGCAATGCAGCTCA
GCAGCAACAGACAGGGCGAGTAGAGCCCTCTCCCTCCCCGCCAGCAGGCG
ACGGGATCGGGGGAGCCCGTCCCATTCGTCTGAGCCTCTCCGAGCGAGCG
CGGACCGTGACGTACGTGGCCACAGCGGCCACCCTGGGCACCTTCAGCGA
GGCCGCGTCCACACCCTTCGGCAGCTACGTGGACTACATTCTGGACGACA
AGGGCTGGCCCGTGCTCCTTTTGAGTGAGCAGTCCCTGCACACGCAGAAC
ATTCGGGTCAATCCGCAGGTCTCCCTCTTCGTGCAAATGCCCCGTTCCGG
GAAGGCCGACGCCGCCTCGGCCGCCCTGAGCCGAGTCACGCTGATCGGCT
CCATCGTACCGGTCGAGGCAGAGGAGCTCCCCGCCATCCGCACAGCCTAC
AGCATTGTGCACTCCTACTCAGAGCGCCTGGTCGAGTCCCCCAAATTCTC
CTTTTGCAAGCTCAAGCCCGAGCGCGTCTACTTCGTGGGCGGCTTTGGGG
TCCAGTCTAAGTGGCTCGAAGTCAGCGACTACGAGGCGGCCGTCCCAGAC
GTGCTCGCGCATGAAATGGCCCGGATCGTGGCCCGCATCAACCAGGAGCA
CGAGCCCGAACTCCGTCTCATGTGCAGGCATTTCCTGGGGGCGCGGGACG
TCGACCAAGTCACGGCCACGACCGTGGATAGGCTCGGCATCGACCTGCGC
GTGACTACGGGGGAGCTCACGGATGAGTACCGGGTGGGCTTCCGCGAGAA
GGTGGTGAGCACGGAGGATGCCAAAAGCGAGCTGGTGAAGATGTTTCAGG
AGGCCTGGGAGAGGGAGCATGACTACGCCTGGACCGACGAACTGCCGCCT
GTGATTCGGTACGCGGAGGACATATTGCGAAAGAAGGGCTAGGGGAATGG
AAGGGAGGGAGGTCGGTCCGGAGTCGAGGCCGTGGGTGTATGGTTAGGTG
AGGGATGGGTCGCTGAGGGGGGGGGTCTGGGGGAGGGGCGCCCGGCGAAT
CACCGGGATTCCTCGTTCGAAGGAGGGAACAAGCCGTGAACGACGTTGGT
GTTCCCGCGAAATGTTGAGCTGGCGGCAAGACGAAAGAAAAAAAGTCCAC
GGCGTGAGCATTCATTGA

protein sequence of rna2599

>rna2599-protein ID=rna2599-protein|Name=rna2599|organism=Nannochloropsis gaditana|type=polypeptide|length=76bp
MDLLFIVILPLKDGSSKEGHTYEASETRNFHGLQSFPSGGILRHDSICPV
CRYEWGCRPELGGLATLLDCRALMRP

mRNA from alignment at CM002459.1:759013..759497-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2599 ID=rna2599|Name=rna2599|organism=Nannochloropsis gaditana|type=mRNA|length=485bp|location=Sequence derived from alignment at CM002459.1:759013..759497- (Nannochloropsis gaditana)
ATGGGTTGGTGATCGTGCTTTGGTCTTTACCTTGGTCCATTGCAGGCTGA
GCTGACAACGATGTTCTCACCTTTCCTTCGCTACACATCTTGTTTGCTGA
CTTCCTCAATTTCACAATACACATTTAGACTTGCTTTTTATTGTCATTTT
GCCTTTAAAGGATGGCTCGTCGAAAGAAGGACACACCTATGAAGGTACGT
GTGGAACAGACCCTTCGAGCCACACTGGATCACAGGAGTGTGCATGGAGG
GACGAGAGGAGGAGAAATTGTGTTGTCTTCGGCCATCGCTTAACTTGTCC
ATTTGTTTCCGACACAATGCACAGCGTCTGAAACACGTAATTTCCACGGG
TTACAGTCTTTTCCGTCCGGTGGCATACTACGGCATGATTCCATTTGTCC
TGTATGTAGGTATGAATGGGGATGCCGCCCCGAGCTGGGTGGACTTGCCA
CGCTACTTGATTGCCGTGCTCTGATGCGACCGTGA

Coding sequence (CDS) from alignment at CM002459.1:759013..759497-

>rna2599 ID=rna2599|Name=rna2599|organism=Nannochloropsis gaditana|type=CDS|length=693bp|location=Sequence derived from alignment at CM002459.1:759013..759497- (Nannochloropsis gaditana)
CGTCTGAAACACGTAATTTCCACGGGTTACAGTCTTTTCCGTCCGGTGGC
ATACTACGGCATGATTCCATTTGTCCTGTATGTAGGTATGAATGGGGATG
CCGCCCCGAGCTGGGTGGACTTGCCACGCTACTTGATTGCCGTGCTCTGA
TGCGACCGTGAACTTGCTTTTTATTGTCATTTTGCCTTTAAAGGATGGCT
CGTCGAAAGAAGGACACACCTATGAAGATGGCGTCTGAAACACGTAATTT
CCACGGGTTACAGTCTTTTCCGTCCGGTGGCATACTACGGCATGATTCCA
TTTGTCCTGTATGTAGGTATGAATGGGGATGCCGCCCCGAGCTGGGTGGA
CTTGCCACGCTACTTGATTGCCGTGCTCTGATGCGACCGTGAACTTGCTT
TTTATTGTCATTTTGCCTTTAAAGGATGGCTCGTCGAAAGAAGGACACAC
CTATGAAGATGGCGTCTGAAACACGTAATTTCCACGGGTTACAGTCTTTT
CCGTCCGGTGGCATACTACGGCATGATTCCATTTGTCCTGTATGTAGGTA
TGAATGGGGATGCCGCCCCGAGCTGGGTGGACTTGCCACGCTACTTGATT
GCCGTGCTCTGATGCGACCGTGAACTTGCTTTTTATTGTCATTTTGCCTT
TAAAGGATGGCTCGTCGAAAGAAGGACACACCTATGAAGATGG

Synonyms

Publications