rna2596, rna2596 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2596
Unique Name	rna2596
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3643
Alignment location	CM002459.1:753310..754861 +

Link to JBrowse

Properties


Property Name	Value
Product	Pentatricopeptide repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100120g8.6954.mrna
Orig protein id	gnl\|cribi\|Naga_100120g8.6954
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:753310..754861 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100120g8	gene2482	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2596	rna2596-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28093.1	cds2588	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:753310..754861+
coding sequence from alignment at CM002459.1:753310..754861+

mRNA sequence

>rna2596 ID=rna2596|Name=rna2596|organism=Nannochloropsis gaditana|type=mRNA|length=3643bp
GGCGGAGGCTGCGATGGCTGTCGTGTAGACGTGTGAGGGCTTTGGCCCAA
TTACCTGACTCAAGAGGTCGCCCACCATTTTCTTGTCTTTGCCTTTACCA
CACGCAACCAGCAAGTTCTGGTACGTGTCTGCGTTCGGCCGCACCCTGTG
CCGGAGCATCTCTTCATGAAAGCCTTGGGCCTGAGGCCAGTCGCCCGCTC
GCGCAGCGCCCAACAACAAGAGATTGTAGGTGAGACTGTTGGGTAGCACA
TGCTCTTTTCGACTCTCAAACAATTGGTTCAGTAACCCCATGGCTTTTCC
CATCTGGCCGGCCCGGACACATGTGCCGATAGCGACGTTGTAGACAAGTA
ATGTCGGTTCGGGAGGCATATGAGGAAATTTGCTCAAAGCTGCGATGGCC
TTTTCAGCGTCCGAAGCCGCAGCTGCTTTCCCGAGATCCTGTACGAGGGC
TTGAAAACTAATCTTGCTATCAGACTGGCCGGCTGAAGACGAAAAAAAAT
GAGGTGCCGGAAGGAATTGATGTCGATGTGGCCGGATGTGCTGCCTTTTG
AGCACACCCCCCGCAATTAAAGCCCCTCTGGCAGCGGTTTGTGGTAGTGA
TGAGACTAACAAGGCCGAGGCGTGGCGAAGAAGTCTCCGCGACGCGAAGG
ATTTCATCTGTGGATCAATTTAGATGACGGCCATGGTGGAAATGAGGTCA
TCGTAGTTGAGTGGTGTGCCGGGGTCAGATCGCAGTACCCGCAAGAGGAG
GCCCTGATTCTTCCGTCTGCCTAAGCATTATCGCCACGACAAAGTCTTCG
CCCTAATAATTTGTAAAAATAATGCACATCCATGGGATGACACGGCTGTC
TTGCATTCAGGAGCTTCACCAAGTTGTTCGTTTCACTTCACGTGTCGCTT
GTAGTCGCTGGTAAGACACCCCTATCGCCCGAGACCCCACGGCGACACGG
GAAAAGGACTGTGGACACGAATACCACGACCACGCGGTCATGCATGGATG
TGATGATGCGCGCAAGCATTTCATGCGCCCACAGGATGCTTTTTCCAATG
TGCTGGGATAAGCGCGTTTTGATTCTGGTGTGTTGGTCGCGGCATAAGAT
GACAAACAAATTCGTACCAATTTGCATTCTCATCCTCACTGTCTTTGACC
CATCGCCTGGTACGATAGGGGCACGCCCGGCATGCACATGTCTCATCGGA
GGCAATGGCAGCAGCCGTGGTGGTACCGTGCCCTTTTTTTCGTGATCGCT
TTGGTGGTCCTGACAAAGAACATAGACTCTGTAATTGCTGCGGAGAATAT
TGCCGTCCCAGAAGTCAGTAAATCAGGGCAGGACGTGACACAGCCCAAAG
CTGGAGAGGCTGCACAAAGAGACGCCAGACATGCATGGATAGGGCACGAG
CCGCGACATGGAGACGAAAGTAGAGAAAAACCAGGCGACAAGACCAGCGA
CCTGGTTGCGGAGGCTGAAGAGGAAATGAATGAGGAGTCGGCGCTGGCGA
GCACAGTGTCCGTGGATGTAGAGAGGCTACAGACTCTTTGGCGCCAAGTC
TTTGAAAATATTGAGCGGGGAAAGGGAGATGAAGATGCGTCGTCTCCTCA
GGCTGTGCGGACCAACCGGGAGGAATTGCAGCGGGAGTTTGCTCGTATCC
AGCAGAGTTTGCACATGCTGATGAGCCACATCAACGAAACGAAGGAAGAT
TTGACTCAGGTGCACGATGCTCTGGAGCAGAAAGAAACCCTTGACAACTT
GGAGGAGCTAGTGCGGCAGGGCAAGATGGGCGTGAATTACGAAACCGGTG
AATTGACGTCATCCGTTCTCAAAAATCTGTCAAGCGCGTTTCCGCAGTCG
GGAGCCGCGGGCAGTGGCGAGGAGAGCATTTCAGAGGAAAATAATAACGG
CGTGGAAATTAGCGACGTGTCGGACACAGAGACCTCTGCGCTGTCGATGC
AACAACAAGAGGATTTGGCGGCCGCAGTCTCCAAGCTCCAGCAGGCGGTG
GACCCCGCGGTGTTACACCTGGACGTGAACTTGTTGCGGGACGTTGTGGT
CCTGTCGGTGAGCACAGCTCTGGGTGGATTCGGGGCGACGGTCATGCATT
TGCCCCCCGCGTTCGGCTTCATCGTGGCGGGCATGGTGATAGGACCCTCG
GGCCTCAAGGTGATGACCGAGGTCACGGAGGTGGAGACGCTGGCTCAGTT
TGGATCCATATTTCTCCTGTTCGGGCACGGAATGCTGTACTGTCAGCAGT
ACCAGCTCAGTCCTTTGGGGTCCACGCTGCCCGACACTTTCTTGGTTGGT
CTGCTCATCCTCTCCGCCATATTCTTCCTGAGTATCCTCGCCTACACCTG
GTGCCTGGGCCCTTCCTCCTTCTACCAGGCCACGCTCGTCGCGTCGGCGG
TCTCGCTTTCCTCCACGACAGCCACGGCGCACGCACTGCTAGCAAATCGT
CTGCGTGAAACCGGGTACGGGAAGACGCTGGTAGAGCTTATGGCGGTGCA
AGACCTGTTGATGGCCCCTTTGCTCTCCATCCCTACGGCTATCAAGGAAC
TCCTCTTTCAGCACGGGCTGCTCCATATGCTCCCTGTTCTCATGTCTTAC
GCACTTGCCCTCTTGGCGGCGGCCGTAGTTTCCAAGCGCCTGATGCCGCG
CCTCATCAACCTCCGGAACCGGGCGGAAAACTCTCTGAGCCTCGACCTCT
TCATTTTGGGCTTGGTCGCCTACTGCCTCCTCATGTCCCTCCTGACCGAG
TGGATGGGCCTGTCCTACGAAGCGGGCGCTTTGCTGGCGGGGCTGATAGT
AGCCGACGTACCCCAAGTCGGTAAAGCGGTGGCTGTGATGGAGCCTCTGA
CCTGCCTCTTCGGCGGGATGTACCTGGGCTCCCTGGGGATGATCTTGAGC
CCCGCCTTCTTGGCCCACCACGCCGGCACCATCCTGCTGTGCGTGGCTGT
AATGATCGTGATCAAAGTCGCGTCCGTGTCGCTGGGAATGCGGTCTTTGG
GGTACTCGCTCAAGGCCTCCGTGCTCGGCGCCCTCACCATGGCGCAGATC
TCGGAGCTCTCCCTCTTCCTGGTCTCCCGGGCCCAGGAATACAAATTGAT
CTCCCGTCAAGTCTATCTAATGGTTGTGGCCACCACCGTTGTCCTTCTGA
TGCTAACCCCCTTCTCATCCCACGCCCTCAAACATCTTGAGCGCGTTGAG
AGCAAAGTGGGTGTGAATAAATCATCCAACGCCTGCTGGTTCGGGGCCTC
ACTGGCGTCACCTTCCCGTCGAAACTTACACCGTACAAGCTTGCCGCCTT
CAAGCACCCACCCGACGGGCAATCTGCTGTACTCCCATGCCGCCACTGCC
GGTGGGGCCGTCGCAGGGCATCGCCGGCCTATGGCGGGGGCCTCGAAAGT
GGGAAGAGAAGAGGAGCCAAGCGACGTGACAATCATGCATGATATGGACA
AGCATGATGCGTCACGGCCGATGCGTATCATTGAGGAGGCCTGACTTTCA
CGTCCTGAATTGCTCGAGGAGGGTTTGCATGTTTGAAGCCACACCCCGGA
AGGGTAACATGCAACGAACATAGAAAAAGCAACCACAAACCTTTGTTGTA
CAAAACAAAAACCCAAAGAATGAAAATAACGAATGCAAATATT

protein sequence of rna2596

>rna2596-protein ID=rna2596-protein|Name=rna2596|organism=Nannochloropsis gaditana|type=polypeptide|length=434bp
MKSFASRRLLRHASALLVSSLPQTAARGALIAGGVLKRQHIRPHRHQFLP
APHFFSSSAGQSDSKISFQALVQDLGKAAAASDAEKAIAALSKFPHMPPE
PTLLVYNVAIGTCVRAGQMGKAMGLLNQLFESRKEHVLPNSLTYNLLLLG
AARAGDWPQAQGFHEEMLRHRVRPNADTYQNLLVACGKGKDKKMVGDLLS
QVIGPKPSHVYTTAIAASARCGDWEGALALLRQLREESGRTPEPEAFHAA
MFACTKPEPARWMECLDLLGEMRSAGLPVGLTAYNTAILCAGLAHEPAVA
QRLLDELKAGKAGNVAPNNGSYRGVVKGLAKSGDHEKCLNLLEEMAQAKL
EPDLLIFTDAMEVFARSQNPGATLRVLHQMKAAKQPDLRLYLGPLIDADE
ASERPVLSAFVQEVEKLGALHVAEGEGQKEAAQK

mRNA from alignment at CM002459.1:753310..754861+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2596 ID=rna2596|Name=rna2596|organism=Nannochloropsis gaditana|type=mRNA|length=1552bp|location=Sequence derived from alignment at CM002459.1:753310..754861+ (Nannochloropsis gaditana)
GAACAACTTGGTGAAGCTCCTGAATGCAAGACAGCCGTGTCATCCCATGG
ATGTGCATTATTTTTACAAATTATTAGGGCGAAGACTTTGTCGTGGCGAT
AATGCTTAGGCAGACGGAAGAATCAGGGCCTCCTCTTGCGGGTACTGCGA
TCTGACCCCGGCACACCACTCAACTACGATGACCTCATTTCCACCATGGC
CGTCATCTAAATTGATCCACAGATGAAATCCTTCGCGTCGCGGAGACTTC
TTCGCCACGCCTCGGCCTTGTTAGTCTCATCACTACCACAAACCGCTGCC
AGAGGGGCTTTAATTGCGGGGGGTGTGCTCAAAAGGCAGCACATCCGGCC
ACATCGACATCAATTCCTTCCGGCACCTCATTTTTTTTCGTCTTCAGCCG
GCCAGTCTGATAGCAAGATTAGTTTTCAAGCCCTCGTACAGGATCTCGGG
AAAGCAGCTGCGGCTTCGGACGCTGAAAAGGCCATCGCAGCTTTGAGCAA
ATTTCCTCATATGCCTCCCGAACCGACATTACTTGTCTACAACGTCGCTA
TCGGCACATGTGTCCGGGCCGGCCAGATGGGAAAAGCCATGGGGTTACTG
AACCAATTGTTTGAGAGTCGAAAAGAGCATGTGCTACCCAACAGTCTCAC
CTACAATCTCTTGTTGTTGGGCGCTGCGCGAGCGGGCGACTGGCCTCAGG
CCCAAGGCTTTCATGAAGAGATGCTCCGGCACAGGGTGCGGCCGAACGCA
GACACGTACCAGAACTTGCTGGTTGCGTGTGGTAAAGGCAAAGACAAGAA
AATGGTGGGCGACCTCTTGAGTCAGGTAATTGGGCCAAAGCCCTCACACG
TCTACACGACAGCCATCGCAGCCTCCGCCCGTTGTGGAGATTGGGAGGGC
GCACTCGCCCTGCTCCGACAGCTCCGAGAGGAGAGCGGCCGCACACCTGA
GCCCGAGGCTTTCCATGCCGCCATGTTCGCCTGCACCAAGCCCGAGCCGG
CGCGATGGATGGAGTGTCTCGACCTATTAGGGGAGATGCGGAGCGCGGGG
CTCCCAGTGGGACTGACCGCTTACAACACAGCCATCTTGTGTGCAGGCCT
CGCGCACGAGCCCGCGGTCGCCCAGCGACTTTTGGACGAGCTGAAggctg
ggaaggcggggaacgTGGCGCCCAACAATGGGAGCTACCGCGGGGTCGTG
AAGGGCCTGGCCAAGTCCGGAGACCACGAGAAATGCCTAAACctcttgga
ggagatggcgcaGGCGAAGCTGGAACCGGACTTGCTCATATTCACGGACG
CCATGGAGGTGTTCGCGCGCTCGCAGAACCCGGGGGCCACTCTGCGGGTC
TTGCATCAGATGAAAGCCGCCAAACAGCCCGACCTCCGCCTGTACCTGGG
GCCCTTGATTGACGCCGACGAGGCGTCGGAGCGGCCGGTGCTTTCTGCCT
TcgtgcaggaggtggaaaagtTGGGCGCCTTGCATGttgcggagggcgag
gggcaaaAGGAGGCTGCGCAGAAATGAAACAAAGCATACATGGGCCGGGA
CA

Coding sequence (CDS) from alignment at CM002459.1:753310..754861+

>rna2596 ID=rna2596|Name=rna2596|organism=Nannochloropsis gaditana|type=CDS|length=1305bp|location=Sequence derived from alignment at CM002459.1:753310..754861+ (Nannochloropsis gaditana)
ATGAAATCCTTCGCGTCGCGGAGACTTCTTCGCCACGCCTCGGCCTTGTT
AGTCTCATCACTACCACAAACCGCTGCCAGAGGGGCTTTAATTGCGGGGG
GTGTGCTCAAAAGGCAGCACATCCGGCCACATCGACATCAATTCCTTCCG
GCACCTCATTTTTTTTCGTCTTCAGCCGGCCAGTCTGATAGCAAGATTAG
TTTTCAAGCCCTCGTACAGGATCTCGGGAAAGCAGCTGCGGCTTCGGACG
CTGAAAAGGCCATCGCAGCTTTGAGCAAATTTCCTCATATGCCTCCCGAA
CCGACATTACTTGTCTACAACGTCGCTATCGGCACATGTGTCCGGGCCGG
CCAGATGGGAAAAGCCATGGGGTTACTGAACCAATTGTTTGAGAGTCGAA
AAGAGCATGTGCTACCCAACAGTCTCACCTACAATCTCTTGTTGTTGGGC
GCTGCGCGAGCGGGCGACTGGCCTCAGGCCCAAGGCTTTCATGAAGAGAT
GCTCCGGCACAGGGTGCGGCCGAACGCAGACACGTACCAGAACTTGCTGG
TTGCGTGTGGTAAAGGCAAAGACAAGAAAATGGTGGGCGACCTCTTGAGT
CAGGTAATTGGGCCAAAGCCCTCACACGTCTACACGACAGCCATCGCAGC
CTCCGCCCGTTGTGGAGATTGGGAGGGCGCACTCGCCCTGCTCCGACAGC
TCCGAGAGGAGAGCGGCCGCACACCTGAGCCCGAGGCTTTCCATGCCGCC
ATGTTCGCCTGCACCAAGCCCGAGCCGGCGCGATGGATGGAGTGTCTCGA
CCTATTAGGGGAGATGCGGAGCGCGGGGCTCCCAGTGGGACTGACCGCTT
ACAACACAGCCATCTTGTGTGCAGGCCTCGCGCACGAGCCCGCGGTCGCC
CAGCGACTTTTGGACGAGCTGAAggctgggaaggcggggaacgTGGCGCC
CAACAATGGGAGCTACCGCGGGGTCGTGAAGGGCCTGGCCAAGTCCGGAG
ACCACGAGAAATGCCTAAACctcttggaggagatggcgcaGGCGAAGCTG
GAACCGGACTTGCTCATATTCACGGACGCCATGGAGGTGTTCGCGCGCTC
GCAGAACCCGGGGGCCACTCTGCGGGTCTTGCATCAGATGAAAGCCGCCA
AACAGCCCGACCTCCGCCTGTACCTGGGGCCCTTGATTGACGCCGACGAG
GCGTCGGAGCGGCCGGTGCTTTCTGCCTTcgtgcaggaggtggaaaagtT
GGGCGCCTTGCATGttgcggagggcgaggggcaaaAGGAGGCTGCGCAGA
AATGA

Synonyms

Publications