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Properties
| Property Name | Value |
|---|
| Product | very long-chain acyl- synthetase isoform 1 |
| Orig transcript id | gnl|cribi|Naga_100120g10.6942.mrna |
| Orig protein id | gnl|cribi|Naga_100120g10.6942 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:747094..750412 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2594 ID=rna2594|Name=rna2594|organism=Nannochloropsis gaditana|type=mRNA|length=2976bp
AGTTAACCCCACGCGCACTCGCCTACGACGAGCCAGGAGGGACAGCGAAG
ACCAGATCTTGTTCCTGCACACGTCCCACTGCGGATCATAATGGGAGAAG
GCGGGGGACTCCTTAGTGCGTGTGTTTGGTTAAGATACGCACTCACGTTG
AGATGCAGGGCTCCGCTTGGTTTCTGCCGGCGCGGCGTCGGAGCTCTCTC
TTCTATTTAAGGGGAAGCAGGCGCCAAATATTGTAATCCAGGAACATCCC
TTCCGTTCACGTCTTCTCTACCAATAGAAGGCATATGGTCTGCCGGAAGG
CAGGTTGATTCAGTGGGTACCGCCCGCGCTGCGCGTCCACTGTGAAACTT
TTTTTCGTTGAGGACACGCTCGGCATAACCCCTGCATTGGCTTTACTCCA
GGCATTGCACCACAAGCTCACGGAAGGACCGCGGTACTTCCGCTACCTGT
CCACTTCATAGTGTCGATTTCATAGCTTACTTCTTTGCCCACGTCTAATC
CCTCAACATAAGTTAGACAGACGAGCCGTGTGAACGCAGGTGGCGAGACT
TCGAGCCGCTCTTTGCCAACGTGCTTTGGACGCGTTCGCGCCCTCGCGGA
GGCAAATAGAAGCGGAAGGTGAGATCACCATCGCGATACAATGACACAGT
CTTGCTCCGCTGAAAGCCTGGGAGCGGGGGCATGGCTCGTGGGGGAGATG
CAAGAGATAGTTCACGAACGGCGTCACAAGCTCGTTAGCGATTGTCGCAC
GGGATTAGCCTTCCTGTCTGTACTTTTAGATATGTTCGTCTTCAACAAAC
CGCGCACATTTGCCCGTTGCTTCGCTGACGCGGTCCGCAAATGGCCTGAC
AAGGTAGCGGTCCAGTTCGTAGACGACGGCCGGGAGCTGACCTTCCGGGA
GATAGACCTCCGCGCCAACCAGGTAGCCCACCTGCTGGCGCAGCACGGAC
TGGGCCGGGGCGACGTGGGTGCGATCATGATGACGAACAAACCCGAGTAC
ATCATTGTCGAGCTGGCCATTGCCAAGTTGGGGGCCGTGTCGGCTCTGCT
GAACTTCAACTTGAAGGGCGAGCCTCTGCGCCACAGCCTGCAGGTGGCGG
GGGCCAAGCTCCTTGTCTTCGACGACGAGCTCGCGCAGGTGGTGCTGCCC
GTGGTACAGGCCTTCAGTCTGGCCAAGCCGGGGGAAGAGAACGGGGGCCC
GGTGAAGGGAAAGCCTGGGAGAGGAAAGGGAGCCCCGGCGGCCGCGGGCG
GCACCATCCCTGCCCTCTTCGTGGGTCCGGGGGACGCGGCCATTCGGAAA
TGGGCCGTGAGTCTGGACAAGGGTGTGGCTATGCAGCATGAGACAGTGCC
GGACCCCTCCATCCTCTCCAACCAGTCGCAGAACGAGCCCATGTCTCTGG
TCTATACGAGTGGGACCACCGGGCTGCCCAAGGCGGCCGTTGTCAAGCAC
AAGCGCGTCTTCCTCATGTCCATGAGCTTCGCCCGTCAGTTCGCCGTACG
GCACTCGGACAAGATCTACTGCACCTTGCCTCTCTACCACTCCGCCGGGG
GAAACATCGGCCTGGGCATCATGGTCAACAAGGGCTGCACCCTCGCTTTG
CGCTCCAAGTTCTCCGCCTCCAAATTTTTCAAGGACGTGCACGACACGGG
CGCGACCGTCACGCAGTACATTGGGGAGCTTTGTCGCTACCTCCTGGCCA
CGCCACCCTCGCCCTACGACCGAAAGCACAAGCTCCGGCTTGCATTTGGG
AATGGGCTGCGTCCAGATGTGTGGCCCCGGTTCGTCAGCAGGTTTAACAT
CCCCGAAATCGGCGAGTTCTACGGCGCAACGGAGGGGAACGTGGTTTTTT
TCAATTACTGGGGCCGAGGGGAGCCGTCTGGTGCCATTGGAAAGGGTGGC
TTCTTCAACAGGATCATCCTGGGATGGACGATCGTCAAGTTCGACCCGAT
CAAGGAGGAGCCGATCAGGGACAGCATGGGCAGGTGCGTTCCTTGCGCGG
ACGGGGAAGCGGGAGAGCTCTTGGCCCGCATCTCGGGGACCTCGGAATTC
TCGGGGTACTACAAAAACAAGGAAGCGACAGAGAAGAAGGTGCTCCGGGA
AGCCTTTGGACGCAAAGGGTCGCACTGGTTCCGGTCGGGCGACTTGATCA
TGGTGGACGAACAGAGCTACATTCATTTCGTGGATCGGATCGGTGACACC
TTCCGGTGGAAAGGTGAGAATGTGTCAACGACGGAAGTGGCGTTGGCCTT
GGGACGGGTGGACTGCCTGGAGGAGGTGAATGTGGTGGGGGTGGAGGTTC
CAGGGAAGGACGGAAGGGCATGTCTGGCGGCGATCACACTGCGCGACGGG
AAAGAGCTTGACTTGGACATGACCTTGGAGGAAGCGAGAGCACACCTGCC
GGCCTACGCTGTGCCACTTTTCCTTCGCGTCTTGAAAAAGGGGACGCAGG
AAACGACAGGGACCTTCAAGCACATGAAGGCCAAGTACCGTACCGAGGGC
ATCGACGCGGGGGCGATCGCGGATGACATGTATTGGCTGGACCCTTCGGA
GGGTGTATACAAGCCTTATGGCAAGGCGGAGTACCAGAAAATCGTGTCTG
GCAAAGCGAAACTCTAGCCTTGGTAGCACGTCGAGGCGGCGAGTCTGTAG
GCCCCGTAAGGGCGAGTCAAAATGCTTTCTTATCAATGTATAGTGAGCTT
GAACCTCTCACACGTTTGCGTGATTGCGTCGAAATGATGGACAGGACTGA
CGTCCCATTGGAGCCCACAAGAGATGACGCGGGGCAGTGATACGATGCTG
GCCGCAGTGGATGGAAAGTTTGCCGCGGACCCAGAAAGGAATGTAGGACA
TGTACGATGCAAGAAATCGTCTATAAATTATGCAATTCTATACAGTTGTC
GTATGACCTGATGAACTTAAGTTTTAAAACGAGATGAAAACGCGCAAAAG
AAACAAATGCCTTTGATCGGGATGCC back to topprotein sequence of rna2594 >rna2594-protein ID=rna2594-protein|Name=rna2594|organism=Nannochloropsis gaditana|type=polypeptide|length=643bp
MVVYFVLLYLERRHKLVSDCRTGLAFLSVLLDMFVFNKPRTFARCFADAV
RKWPDKVAVQFVDDGRELTFREIDLRANQVAHLLAQHGLGRGDVGAIMMT
NKPEYIIVELAIAKLGAVSALLNFNLKGEPLRHSLQVAGAKLLVFDDELA
QVVLPVVQAFSLAKPGEENGGPVKGKPGRGKGAPAAAGGTIPALFVGPGD
AAIRKWAVSLDKGVAMQHETVPDPSILSNQSQNEPMSLVYTSGTTGLPKA
AVVKHKRVFLMSMSFARQFAVRHSDKIYCTLPLYHSAGGNIGLGIMVNKG
CTLALRSKFSASKFFKDVHDTGATVTQYIGELCRYLLATPPSPYDRKHKL
RLAFGNGLRPDVWPRFVSRFNIPEIGEFYGATEGNVVFFNYWGRGEPSGA
IGKGGFFNRIILGWTIVKFDPIKEEPIRDSMGRCVPCADGEAGELLARIS
GTSEFSGYYKNKEATEKKVLREAFGRKGSHWFRSGDLIMVDEQSYIHFVD
RIGDTFRWKGENVSTTEVALALGRVDCLEEVNVVGVEVPGKDGRACLAAI
TLRDGKELDLDMTLEEARAHLPAYAVPLFLRVLKKGTQETTGTFKHMKAK
YRTEGIDAGAIADDMYWLDPSEGVYKPYGKAEYQKIVSGKAKL back to topmRNA from alignment at CM002459.1:747094..750412- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna2594 ID=rna2594|Name=rna2594|organism=Nannochloropsis gaditana|type=mRNA|length=3319bp|location=Sequence derived from alignment at CM002459.1:747094..750412- (Nannochloropsis gaditana)
AGTTAACCCCACGCGCACTCGCCTACGACGAGCCAGGAGGGACAGCGAAG
ACCAGATCTTGTTCCTGCACACGTCCCACTGCGGATCATAATGGGAGAAG
GCGGGGGACTCCTTAGTGCGTGTGTTTGGTTAAGATACGCACTCACGTTG
AGATGCAGGGCTCCGCTTGGTTTCTGCCGGCGCGGCGTCGGAGCTCTCTC
TTCTATTTAAGGGGAAGCAGGCGCCAAATATTGTAATCCAGGAACATCCC
TTCCGTTCACGTCTTCTCTACCAATAGAAGGCATATGGTCTGCCGGAAGG
CAGGTTGATTCAGTGGGTACCGCCCGCGCTGCGCGTCCACTGTGAAACTT
TTTTTCGTTGAGGACACGCTCGGCATAACCCCTGCATTGGCTTTACTCCA
GGCATTGCACCACAAGCTCACGGAAGGACCGCGGTACTTCCGCTACCTGT
CCACTTCATAGTGTCGATTTCATAGCTTACTTCTTTGCCCACGTCTAATC
CCTCAACATAAGTTAGACAGACGAGCCGTGTGAACGCAGGTGGCGAGACT
TCGAGCCGCTCTTTGCCAACGTGCTTTGGACGCGTTCGCGCCCTCGCGGA
GGCAAATAGAAGCGGAAGGTGAGATCACCATCGCGATACAATGACACAGT
CTTGCTCCGCTGAAAGCCTGGGAGCGGGGGCATGGCTCGTGGGGGAGATG
CAAGAGATAGTTCACGGTACGTTGGCAGGTAAAGTGGTCCTACGGAATAC
ATTCGTGACGTGTCTGTGGCTGATTTCTCCGTCACGGAGTAATCATGATA
TAATTTTGATTGAAATACAAATTCCTCTTCGAGATGGTTGGACGTTGTGG
AACGCGAGGAAGTTTTACGGGCTTCTTGCGGTTGCATTCTTGTAGAGTGC
TCTGACCTTTGTTTTTCAATATCCCCTGAATCATAACAGCTGTCGCCGCT
GCGGCTGACAGCATTCATCTTCCTCTGGGAGCTTATAATGGGCCTGTACT
TGTCTTGTTTAAGGCAATTTTGGTGGTGATGGTGGTCTATTTTGTCCTCC
TCTACCTAGAACGGCGTCACAAGCTCGTTAGCGATTGTCGCACGGGATTA
GCCTTCCTGTCTGTACTTTTAGATATGTTCGTCTTCAACAAACCGCGCAC
ATTTGCCCGTTGCTTCGCTGACGCGGTCCGCAAATGGCCTGACAAGGTAG
CGGTCCAGTTCGTAGACGACGGCCGGGAGCTGACCTTCCGGGAGATAGAC
CTCCGCGCCAACCAGGTAGCCCACCTGCTGGCGCAGCACGGACTGGGCCG
GGGCGACGTGGGTGCGATCATGATGACGAACAAACCCGAGTACATCATTG
TCGAGCTGGCCATTGCCAAGTTGGGGGCCGTGTCGGCTCTGCTGAACTTC
AACTTGAAGGGCGAGCCTCTGCGCCACAGCCTGCAGGTGGCGGGGGCCAA
GCTCCTTGTCTTCGACGACGAGCTCGCGCAGGTGGTGCTGCCCGTGGTAC
AGGCCTTCAGTCTGGCCAAGCCGGGGGAAGAGAACGGGGGCCCGGTGAAG
GGAAAGCCTGGGAGAGGAAAGGGAGCCCCGGCGGCCGCGGGCGGCACCAT
CCCTGCCCTCTTCGTGGGTCCGGGGGACGCGGCCATTCGGAAATGGGCCG
TGAGTCTGGACAAGGGTGTGGCTATGCAGCATGAGACAGTGCCGGACCCC
TCCATCCTCTCCAACCAGTCGCAGAACGAGCCCATGTCTCTGGTCTATAC
GAGTGGGACCACCGGGCTGCCCAAGGCGGCCGTTGTCAAGCACAAGCGCG
TCTTCCTCATGTCCATGAGCTTCGCCCGTCAGTTCGCCGTACGGCACTCG
GACAAGATCTACTGCACCTTGCCTCTCTACCACTCCGCCGGGGGAAACAT
CGGCCTGGGCATCATGGTCAACAAGGGCTGCACCCTCGCTTTGCGCTCCA
AGTTCTCCGCCTCCAAATTTTTCAAGGACGTGCACGACACGGGCGCGACC
GTCACGCAGTACATTGGGGAGCTTTGTCGCTACCTCCTGGCCACGCCACC
CTCGCCCTACGACCGAAAGCACAAGCTCCGGCTTGCATTTGGGAATGGGC
TGCGTCCAGATGTGTGGCCCCGGTTCGTCAGCAGGTTTAACATCCCCGAA
ATCGGCGAGTTCTACGGCGCAACGGAGGGGAACGTGGTTTTTTTCAATTA
CTGGGGCCGAGGGGAGCCGTCTGGTGCCATTGGAAAGGGTGGCTTCTTCA
ACAGGATCATCCTGGGATGGACGATCGTCAAGTTCGACCCGATCAAGGAG
GAGCCGATCAGGGACAGCATGGGCAGGTGCGTTCCTTGCGCGGACGGGGA
AGCGGGAGAGCTCTTGGCCCGCATCTCGGGGACCTCGGAATTCTCGGGGT
ACTACAAAAACAAGGAAGCGACAGAGAAGAAGGTGCTCCGGGAAGCCTTT
GGACGCAAAGGGTCGCACTGGTTCCGGTCGGGCGACTTGATCATGGTGGA
CGAACAGAGCTACATTCATTTCGTGGATCGGATCGGTGACACCTTCCGGT
GGAAAGGTGAGAATGTGTCAACGACGGAAGTGGCGTTGGCCTTGGGACGG
GTGGACTGCCTGGAGGAGGTGAATGTGGTGGGGGTGGAGGTTCCAGGGAA
GGACGGAAGGGCATGTCTGGCGGCGATCACACTGCGCGACGGGAAAGAGC
TTGACTTGGACATGACCTTGGAGGAAGCGAGAGCACACCTGCCGGCCTAC
GCTGTGCCACTTTTCCTTCGCGTCTTGAAAAAGGGGACGCAGGAAACGAC
AGGGACCTTCAAGCACATGAAGGCCAAGTACCGTACCGAGGGCATCGACG
CGGGGGCGATCGCGGATGACATGTATTGGCTGGACCCTTCGGAGGGTGTA
TACAAGCCTTATGGCAAGGCGGAGTACCAGAAAATCGTGTCTGGCAAAGC
GAAACTCTAGCCTTGGTAGCACGTCGAGGCGGCGAGTCTGTAGGCCCCGT
AAGGGCGAGTCAAAATGCTTTCTTATCAATGTATAGTGAGCTTGAACCTC
TCACACGTTTGCGTGATTGCGTCGAAATGATGGACAGGACTGACGTCCCA
TTGGAGCCCACAAGAGATGACGCGGGGCAGTGATACGATGCTGGCCGCAG
TGGATGGAAAGTTTGCCGCGGACCCAGAAAGGAATGTAGGACATGTACGA
TGCAAGAAATCGTCTATAAATTATGCAATTCTATACAGTTGTCGTATGAC
CTGATGAACTTAAGTTTTAAAACGAGATGAAAACGCGCAAAAGAAACAAA
TGCCTTTGATCGGGATGCC back to topCoding sequence (CDS) from alignment at CM002459.1:747094..750412- >rna2594 ID=rna2594|Name=rna2594|organism=Nannochloropsis gaditana|type=CDS|length=1932bp|location=Sequence derived from alignment at CM002459.1:747094..750412- (Nannochloropsis gaditana)
ATGGTGGTCTATTTTGTCCTCCTCTACCTAGAACGGCGTCACAAGCTCGT
TAGCGATTGTCGCACGGGATTAGCCTTCCTGTCTGTACTTTTAGATATGT
TCGTCTTCAACAAACCGCGCACATTTGCCCGTTGCTTCGCTGACGCGGTC
CGCAAATGGCCTGACAAGGTAGCGGTCCAGTTCGTAGACGACGGCCGGGA
GCTGACCTTCCGGGAGATAGACCTCCGCGCCAACCAGGTAGCCCACCTGC
TGGCGCAGCACGGACTGGGCCGGGGCGACGTGGGTGCGATCATGATGACG
AACAAACCCGAGTACATCATTGTCGAGCTGGCCATTGCCAAGTTGGGGGC
CGTGTCGGCTCTGCTGAACTTCAACTTGAAGGGCGAGCCTCTGCGCCACA
GCCTGCAGGTGGCGGGGGCCAAGCTCCTTGTCTTCGACGACGAGCTCGCG
CAGGTGGTGCTGCCCGTGGTACAGGCCTTCAGTCTGGCCAAGCCGGGGGA
AGAGAACGGGGGCCCGGTGAAGGGAAAGCCTGGGAGAGGAAAGGGAGCCC
CGGCGGCCGCGGGCGGCACCATCCCTGCCCTCTTCGTGGGTCCGGGGGAC
GCGGCCATTCGGAAATGGGCCGTGAGTCTGGACAAGGGTGTGGCTATGCA
GCATGAGACAGTGCCGGACCCCTCCATCCTCTCCAACCAGTCGCAGAACG
AGCCCATGTCTCTGGTCTATACGAGTGGGACCACCGGGCTGCCCAAGGCG
GCCGTTGTCAAGCACAAGCGCGTCTTCCTCATGTCCATGAGCTTCGCCCG
TCAGTTCGCCGTACGGCACTCGGACAAGATCTACTGCACCTTGCCTCTCT
ACCACTCCGCCGGGGGAAACATCGGCCTGGGCATCATGGTCAACAAGGGC
TGCACCCTCGCTTTGCGCTCCAAGTTCTCCGCCTCCAAATTTTTCAAGGA
CGTGCACGACACGGGCGCGACCGTCACGCAGTACATTGGGGAGCTTTGTC
GCTACCTCCTGGCCACGCCACCCTCGCCCTACGACCGAAAGCACAAGCTC
CGGCTTGCATTTGGGAATGGGCTGCGTCCAGATGTGTGGCCCCGGTTCGT
CAGCAGGTTTAACATCCCCGAAATCGGCGAGTTCTACGGCGCAACGGAGG
GGAACGTGGTTTTTTTCAATTACTGGGGCCGAGGGGAGCCGTCTGGTGCC
ATTGGAAAGGGTGGCTTCTTCAACAGGATCATCCTGGGATGGACGATCGT
CAAGTTCGACCCGATCAAGGAGGAGCCGATCAGGGACAGCATGGGCAGGT
GCGTTCCTTGCGCGGACGGGGAAGCGGGAGAGCTCTTGGCCCGCATCTCG
GGGACCTCGGAATTCTCGGGGTACTACAAAAACAAGGAAGCGACAGAGAA
GAAGGTGCTCCGGGAAGCCTTTGGACGCAAAGGGTCGCACTGGTTCCGGT
CGGGCGACTTGATCATGGTGGACGAACAGAGCTACATTCATTTCGTGGAT
CGGATCGGTGACACCTTCCGGTGGAAAGGTGAGAATGTGTCAACGACGGA
AGTGGCGTTGGCCTTGGGACGGGTGGACTGCCTGGAGGAGGTGAATGTGG
TGGGGGTGGAGGTTCCAGGGAAGGACGGAAGGGCATGTCTGGCGGCGATC
ACACTGCGCGACGGGAAAGAGCTTGACTTGGACATGACCTTGGAGGAAGC
GAGAGCACACCTGCCGGCCTACGCTGTGCCACTTTTCCTTCGCGTCTTGA
AAAAGGGGACGCAGGAAACGACAGGGACCTTCAAGCACATGAAGGCCAAG
TACCGTACCGAGGGCATCGACGCGGGGGCGATCGCGGATGACATGTATTG
GCTGGACCCTTCGGAGGGTGTATACAAGCCTTATGGCAAGGCGGAGTACC
AGAAAATCGTGTCTGGCAAAGCGAAACTCTAG back to top
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