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Properties
| Property Name | Value |
|---|
| Product | very long-chain acyl- synthetase isoform 1 |
| Orig transcript id | gnl|cribi|Naga_100120g10.6941.mrna |
| Orig protein id | gnl|cribi|Naga_100120g10.6941 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:747094..750412 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2593 ID=rna2593|Name=rna2593|organism=Nannochloropsis gaditana|type=mRNA|length=1629bp
TCTTCGATGTGACAGGCACGGTGAGAAGCTATGGAGCAGGCGCAGCTTGC
ATTCATGGACGAGGACTACGCCACGGCGGATGAGCTCTTCTCGGCTTACA
TTGCAACGCACCCTGACGACGCAACTGCCCTCGTTTCGCGGGCAGCAGTG
CATTTGAAGTTGAATCAGCCATCACAAGCCCTTCACGACGCTGAAGCCGC
CGCATCCCTGAAATCTGACTTGGAAGTAGCATGGTATCGGCAAGGAGTCG
CGGCGTTTGCTTTGGAGGATTTCTCACGGGCCAAGGAGGCATTCATGCGG
GGGCGTGCCTTGCTTGGCGACCGACCCGAACCTCAAGGGCGTAGATACGA
CGTGTGGCTGCGAAAGACGACTCTAGAATTGGGAGAGCATGATGAGCAGG
GCATGACAGTAGTGGCAGAGGGTGGTATAAAGGAATTGAGGCAAGAACAA
GGTGCGAAGGGAATTGAAGCTACGGTTCCTCGCTCCCAGCCGAGTCCTAC
GCATCCCCCTTCCTCTGCGCCAGCTATCCCAGCCGGGCATGTGAAATTTC
AATTCTACCAGACCACATCCTATGTGACAGTCACCATTCTCTATAAAGGC
CTCAGAGAGGAGGACGCTAACGTGTCTGTCCAGCCACGCCACCTGAAAGT
CTCAGTGGGCGCAGACGGAGACGCCTTGTTCGACCGAGCTCTTTTTGAGA
CCGTGGTTCCCGAGGAGAGTACCAGCAAAATTTTCGCGACCAAAGTTGAA
GTCAAGCTAAGGAAAGCAATGGAAGGCCTGACGTGGCCTGAGCTGTGTGC
TCTCTCGCCAAGTGCAGCCGCCTCGGTCCACACGGTCTCCGCGCCAACCC
CCGACTCTCACGCGACCGCTCTCCCGTCTTTGGCACAAGGCCCTGCCACT
GCACCGAGCAGCAAGCCCTTGCGGCCATATGCGAGCACCAAAGATTGGGG
TGCAGTCGAGAAAGAGATCTCGAAGGAATTGGAGAGCGAGAAGCCGGAGG
GGGACGAGGCCTTGAACACGCTCTTCCGGGACATCTACGCCAAGGGCTCC
GACGAGACACGGCGTGCGATGGTCAAGTCTTTCCAGACGTCGGGAGGGAC
GGTGCTGTCCACCAATTGGGAGGAGGTGGGGAAGAAAGACTACGAGAAGG
AGGAGGAGCGCAAGGCCCCGGAAGGCATGGAGTGGCGGAAGTGGGGGGTG
TAGGCAAGGACGTGTTAGGAGAGTTGGCGAGGATCCGGGGGGGAGCTTTC
GGCTGTGTACAGGCTTATAGAGGTCCGTAAGCTCGTGAGAAGCCGTGGGA
AAGGAAGAGGCTGAGTAAAGATTGAGTACAACAGACTTCGCATGGGTGTG
CCGCTAGGGCGAGTCACGGCTATGCACACGTCCAGGGTGTCGGACGGCAG
GAAGCGCCACCCCGTGCTCTGTCGACTGCTTTCTGGTTCTCATTCATCTA
AAACTTGATACTGTGAGGACCGCACCGGATAAGCGAAATGTTTTGGTGCC
TTCCGCCTCAAAGGCATCCCGATCAAAGGCATTTGTTTCTTTTGCGCGTT
TTCATCTCGTTTTAAAACTTAAGTTCATCAGGTCATACGACAACTGTATA
GAATTGCATAATTTATAGACGATTTCTTG back to topprotein sequence of rna2593 >rna2593-protein ID=rna2593-protein|Name=rna2593|organism=Nannochloropsis gaditana|type=polypeptide|length=658bp
MTQSCSAESLGAGAWLVGEMQEIVHERRHKLVSDCRTGLAFLSVLLDMFV
FNKPRTFARCFADAVRKWPDKVAVQFVDDGRELTFREIDLRANQVAHLLA
QHGLGRGDVGAIMMTNKPEYIIVELAIAKLGAVSALLNFNLKGEPLRHSL
QVAGAKLLVFDDELAQVVLPVVQAFSLAKPGEENGGPVKGKPGRGKGAPA
AAGGTIPALFVGPGDAAIRKWAVSLDKGVAMQHETVPDPSILSNQSQNEP
MSLVYTSGTTGLPKAAVVKHKRVFLMSMSFARQFAVRHSDKIYCTLPLYH
SAGGNIGLGIMVNKGCTLALRSKFSASKFFKDVHDTGATVTQYIGELCRY
LLATPPSPYDRKHKLRLAFGNGLRPDVWPRFVSRFNIPEIGEFYGATEGN
VVFFNYWGRGEPSGAIGKGGFFNRIILGWTIVKFDPIKEEPIRDSMGRCV
PCADGEAGELLARISGTSEFSGYYKNKEATEKKVLREAFGRKGSHWFRSG
DLIMVDEQSYIHFVDRIGDTFRWKGENVSTTEVALALGRVDCLEEVNVVG
VEVPGKDGRACLAAITLRDGKELDLDMTLEEARAHLPAYAVPLFLRVLKK
GTQETTGTFKHMKAKYRTEGIDAGAIADDMYWLDPSEGVYKPYGKAEYQK
IVSGKAKL back to topmRNA from alignment at CM002459.1:747094..750412- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2593 ID=rna2593|Name=rna2593|organism=Nannochloropsis gaditana|type=mRNA|length=3319bp|location=Sequence derived from alignment at CM002459.1:747094..750412- (Nannochloropsis gaditana)
AGTTAACCCCACGCGCACTCGCCTACGACGAGCCAGGAGGGACAGCGAAG
ACCAGATCTTGTTCCTGCACACGTCCCACTGCGGATCATAATGGGAGAAG
GCGGGGGACTCCTTAGTGCGTGTGTTTGGTTAAGATACGCACTCACGTTG
AGATGCAGGGCTCCGCTTGGTTTCTGCCGGCGCGGCGTCGGAGCTCTCTC
TTCTATTTAAGGGGAAGCAGGCGCCAAATATTGTAATCCAGGAACATCCC
TTCCGTTCACGTCTTCTCTACCAATAGAAGGCATATGGTCTGCCGGAAGG
CAGGTTGATTCAGTGGGTACCGCCCGCGCTGCGCGTCCACTGTGAAACTT
TTTTTCGTTGAGGACACGCTCGGCATAACCCCTGCATTGGCTTTACTCCA
GGCATTGCACCACAAGCTCACGGAAGGACCGCGGTACTTCCGCTACCTGT
CCACTTCATAGTGTCGATTTCATAGCTTACTTCTTTGCCCACGTCTAATC
CCTCAACATAAGTTAGACAGACGAGCCGTGTGAACGCAGGTGGCGAGACT
TCGAGCCGCTCTTTGCCAACGTGCTTTGGACGCGTTCGCGCCCTCGCGGA
GGCAAATAGAAGCGGAAGGTGAGATCACCATCGCGATACAATGACACAGT
CTTGCTCCGCTGAAAGCCTGGGAGCGGGGGCATGGCTCGTGGGGGAGATG
CAAGAGATAGTTCACGGTACGTTGGCAGGTAAAGTGGTCCTACGGAATAC
ATTCGTGACGTGTCTGTGGCTGATTTCTCCGTCACGGAGTAATCATGATA
TAATTTTGATTGAAATACAAATTCCTCTTCGAGATGGTTGGACGTTGTGG
AACGCGAGGAAGTTTTACGGGCTTCTTGCGGTTGCATTCTTGTAGAGTGC
TCTGACCTTTGTTTTTCAATATCCCCTGAATCATAACAGCTGTCGCCGCT
GCGGCTGACAGCATTCATCTTCCTCTGGGAGCTTATAATGGGCCTGTACT
TGTCTTGTTTAAGGCAATTTTGGTGGTGATGGTGGTCTATTTTGTCCTCC
TCTACCTAGAACGGCGTCACAAGCTCGTTAGCGATTGTCGCACGGGATTA
GCCTTCCTGTCTGTACTTTTAGATATGTTCGTCTTCAACAAACCGCGCAC
ATTTGCCCGTTGCTTCGCTGACGCGGTCCGCAAATGGCCTGACAAGGTAG
CGGTCCAGTTCGTAGACGACGGCCGGGAGCTGACCTTCCGGGAGATAGAC
CTCCGCGCCAACCAGGTAGCCCACCTGCTGGCGCAGCACGGACTGGGCCG
GGGCGACGTGGGTGCGATCATGATGACGAACAAACCCGAGTACATCATTG
TCGAGCTGGCCATTGCCAAGTTGGGGGCCGTGTCGGCTCTGCTGAACTTC
AACTTGAAGGGCGAGCCTCTGCGCCACAGCCTGCAGGTGGCGGGGGCCAA
GCTCCTTGTCTTCGACGACGAGCTCGCGCAGGTGGTGCTGCCCGTGGTAC
AGGCCTTCAGTCTGGCCAAGCCGGGGGAAGAGAACGGGGGCCCGGTGAAG
GGAAAGCCTGGGAGAGGAAAGGGAGCCCCGGCGGCCGCGGGCGGCACCAT
CCCTGCCCTCTTCGTGGGTCCGGGGGACGCGGCCATTCGGAAATGGGCCG
TGAGTCTGGACAAGGGTGTGGCTATGCAGCATGAGACAGTGCCGGACCCC
TCCATCCTCTCCAACCAGTCGCAGAACGAGCCCATGTCTCTGGTCTATAC
GAGTGGGACCACCGGGCTGCCCAAGGCGGCCGTTGTCAAGCACAAGCGCG
TCTTCCTCATGTCCATGAGCTTCGCCCGTCAGTTCGCCGTACGGCACTCG
GACAAGATCTACTGCACCTTGCCTCTCTACCACTCCGCCGGGGGAAACAT
CGGCCTGGGCATCATGGTCAACAAGGGCTGCACCCTCGCTTTGCGCTCCA
AGTTCTCCGCCTCCAAATTTTTCAAGGACGTGCACGACACGGGCGCGACC
GTCACGCAGTACATTGGGGAGCTTTGTCGCTACCTCCTGGCCACGCCACC
CTCGCCCTACGACCGAAAGCACAAGCTCCGGCTTGCATTTGGGAATGGGC
TGCGTCCAGATGTGTGGCCCCGGTTCGTCAGCAGGTTTAACATCCCCGAA
ATCGGCGAGTTCTACGGCGCAACGGAGGGGAACGTGGTTTTTTTCAATTA
CTGGGGCCGAGGGGAGCCGTCTGGTGCCATTGGAAAGGGTGGCTTCTTCA
ACAGGATCATCCTGGGATGGACGATCGTCAAGTTCGACCCGATCAAGGAG
GAGCCGATCAGGGACAGCATGGGCAGGTGCGTTCCTTGCGCGGACGGGGA
AGCGGGAGAGCTCTTGGCCCGCATCTCGGGGACCTCGGAATTCTCGGGGT
ACTACAAAAACAAGGAAGCGACAGAGAAGAAGGTGCTCCGGGAAGCCTTT
GGACGCAAAGGGTCGCACTGGTTCCGGTCGGGCGACTTGATCATGGTGGA
CGAACAGAGCTACATTCATTTCGTGGATCGGATCGGTGACACCTTCCGGT
GGAAAGGTGAGAATGTGTCAACGACGGAAGTGGCGTTGGCCTTGGGACGG
GTGGACTGCCTGGAGGAGGTGAATGTGGTGGGGGTGGAGGTTCCAGGGAA
GGACGGAAGGGCATGTCTGGCGGCGATCACACTGCGCGACGGGAAAGAGC
TTGACTTGGACATGACCTTGGAGGAAGCGAGAGCACACCTGCCGGCCTAC
GCTGTGCCACTTTTCCTTCGCGTCTTGAAAAAGGGGACGCAGGAAACGAC
AGGGACCTTCAAGCACATGAAGGCCAAGTACCGTACCGAGGGCATCGACG
CGGGGGCGATCGCGGATGACATGTATTGGCTGGACCCTTCGGAGGGTGTA
TACAAGCCTTATGGCAAGGCGGAGTACCAGAAAATCGTGTCTGGCAAAGC
GAAACTCTAGCCTTGGTAGCACGTCGAGGCGGCGAGTCTGTAGGCCCCGT
AAGGGCGAGTCAAAATGCTTTCTTATCAATGTATAGTGAGCTTGAACCTC
TCACACGTTTGCGTGATTGCGTCGAAATGATGGACAGGACTGACGTCCCA
TTGGAGCCCACAAGAGATGACGCGGGGCAGTGATACGATGCTGGCCGCAG
TGGATGGAAAGTTTGCCGCGGACCCAGAAAGGAATGTAGGACATGTACGA
TGCAAGAAATCGTCTATAAATTATGCAATTCTATACAGTTGTCGTATGAC
CTGATGAACTTAAGTTTTAAAACGAGATGAAAACGCGCAAAAGAAACAAA
TGCCTTTGATCGGGATGCC back to topCoding sequence (CDS) from alignment at CM002459.1:747094..750412- >rna2593 ID=rna2593|Name=rna2593|organism=Nannochloropsis gaditana|type=CDS|length=3954bp|location=Sequence derived from alignment at CM002459.1:747094..750412- (Nannochloropsis gaditana)
AACGGCGTCACAAGCTCGTTAGCGATTGTCGCACGGGATTAGCCTTCCTG
TCTGTACTTTTAGATATGTTCGTCTTCAACAAACCGCGCACATTTGCCCG
TTGCTTCGCTGACGCGGTCCGCAAATGGCCTGACAAGGTAGCGGTCCAGT
TCGTAGACGACGGCCGGGAGCTGACCTTCCGGGAGATAGACCTCCGCGCC
AACCAGGTAGCCCACCTGCTGGCGCAGCACGGACTGGGCCGGGGCGACGT
GGGTGCGATCATGATGACGAACAAACCCGAGTACATCATTGTCGAGCTGG
CCATTGCCAAGTTGGGGGCCGTGTCGGCTCTGCTGAACTTCAACTTGAAG
GGCGAGCCTCTGCGCCACAGCCTGCAGGTGGCGGGGGCCAAGCTCCTTGT
CTTCGACGACGAGCTCGCGCAGGTGGTGCTGCCCGTGGTACAGGCCTTCA
GTCTGGCCAAGCCGGGGGAAGAGAACGGGGGCCCGGTGAAGGGAAAGCCT
GGGAGAGGAAAGGGAGCCCCGGCGGCCGCGGGCGGCACCATCCCTGCCCT
CTTCGTGGGTCCGGGGGACGCGGCCATTCGGAAATGGGCCGTGAGTCTGG
ACAAGGGTGTGGCTATGCAGCATGAGACAGTGCCGGACCCCTCCATCCTC
TCCAACCAGTCGCAGAACGAGCCCATGTCTCTGGTCTATACGAGTGGGAC
CACCGGGCTGCCCAAGGCGGCCGTTGTCAAGCACAAGCGCGTCTTCCTCA
TGTCCATGAGCTTCGCCCGTCAGTTCGCCGTACGGCACTCGGACAAGATC
TACTGCACCTTGCCTCTCTACCACTCCGCCGGGGGAAACATCGGCCTGGG
CATCATGGTCAACAAGGGCTGCACCCTCGCTTTGCGCTCCAAGTTCTCCG
CCTCCAAATTTTTCAAGGACGTGCACGACACGGGCGCGACCGTCACGCAG
TACATTGGGGAGCTTTGTCGCTACCTCCTGGCCACGCCACCCTCGCCCTA
CGACCGAAAGCACAAGCTCCGGCTTGCATTTGGGAATGGGCTGCGTCCAG
ATGTGTGGCCCCGGTTCGTCAGCAGGTTTAACATCCCCGAAATCGGCGAG
TTCTACGGCGCAACGGAGGGGAACGTGGTTTTTTTCAATTACTGGGGCCG
AGGGGAGCCGTCTGGTGCCATTGGAAAGGGTGGCTTCTTCAACAGGATCA
TCCTGGGATGGACGATCGTCAAGTTCGACCCGATCAAGGAGGAGCCGATC
AGGGACAGCATGGGCAGGTGCGTTCCTTGCGCGGACGGGGAAGCGGGAGA
GCTCTTGGCCCGCATCTCGGGGACCTCGGAATTCTCGGGGTACTACAAAA
ACAAGGAAGCGACAGAGAAGAAGGTGCTCCGGGAAGCCTTTGGACGCAAA
GGGTCGCACTGGTTCCGGTCGGGCGACTTGATCATGGTGGACGAACAGAG
CTACATTCATTTCGTGGATCGGATCGGTGACACCTTCCGGTGGAAAGGTG
AGAATGTGTCAACGACGGAAGTGGCGTTGGCCTTGGGACGGGTGGACTGC
CTGGAGGAGGTGAATGTGGTGGGGGTGGAGGTTCCAGGGAAGGACGGAAG
GGCATGTCTGGCGGCGATCACACTGCGCGACGGGAAAGAGCTTGACTTGG
ACATGACCTTGGAGGAAGCGAGAGCACACCTGCCGGCCTACGCTGTGCCA
CTTTTCCTTCGCGTCTTGAAAAAGGGGACGCAGGAAACGACAGGGACCTT
CAAGCACATGAAGGCCAAGTACCGTACCGAGGGCATCGACGCGGGGGCGA
TCGCGGATGACATGTATTGGCTGGACCCTTCGGAGGGTGTATACAAGCCT
TATGGCAAGGCGGAGTACCAGAAAATCGTGTCTGGCAAAGCGAAACTCTA
GATGACACAGTCTTGCTCCGCTGAAAGCCTGGGAGCGGGGGCATGGCTCG
TGGGGGAGATGCAAGAGATAGTTCACGAACGGCGTCACAAGCTCGTTAGC
GATTGTCGCACGGGATTAGCCTTCCTGTCTGTACTTTTAGATATGTTCGT
CTTCAACAAACCGCGCACATTTGCCCGTTGCTTCGCTGACGCGGTCCGCA
AATGGCCTGACAAGGTAGCGGTCCAGTTCGTAGACGACGGCCGGGAGCTG
ACCTTCCGGGAGATAGACCTCCGCGCCAACCAGGTAGCCCACCTGCTGGC
GCAGCACGGACTGGGCCGGGGCGACGTGGGTGCGATCATGATGACGAACA
AACCCGAGTACATCATTGTCGAGCTGGCCATTGCCAAGTTGGGGGCCGTG
TCGGCTCTGCTGAACTTCAACTTGAAGGGCGAGCCTCTGCGCCACAGCCT
GCAGGTGGCGGGGGCCAAGCTCCTTGTCTTCGACGACGAGCTCGCGCAGG
TGGTGCTGCCCGTGGTACAGGCCTTCAGTCTGGCCAAGCCGGGGGAAGAG
AACGGGGGCCCGGTGAAGGGAAAGCCTGGGAGAGGAAAGGGAGCCCCGGC
GGCCGCGGGCGGCACCATCCCTGCCCTCTTCGTGGGTCCGGGGGACGCGG
CCATTCGGAAATGGGCCGTGAGTCTGGACAAGGGTGTGGCTATGCAGCAT
GAGACAGTGCCGGACCCCTCCATCCTCTCCAACCAGTCGCAGAACGAGCC
CATGTCTCTGGTCTATACGAGTGGGACCACCGGGCTGCCCAAGGCGGCCG
TTGTCAAGCACAAGCGCGTCTTCCTCATGTCCATGAGCTTCGCCCGTCAG
TTCGCCGTACGGCACTCGGACAAGATCTACTGCACCTTGCCTCTCTACCA
CTCCGCCGGGGGAAACATCGGCCTGGGCATCATGGTCAACAAGGGCTGCA
CCCTCGCTTTGCGCTCCAAGTTCTCCGCCTCCAAATTTTTCAAGGACGTG
CACGACACGGGCGCGACCGTCACGCAGTACATTGGGGAGCTTTGTCGCTA
CCTCCTGGCCACGCCACCCTCGCCCTACGACCGAAAGCACAAGCTCCGGC
TTGCATTTGGGAATGGGCTGCGTCCAGATGTGTGGCCCCGGTTCGTCAGC
AGGTTTAACATCCCCGAAATCGGCGAGTTCTACGGCGCAACGGAGGGGAA
CGTGGTTTTTTTCAATTACTGGGGCCGAGGGGAGCCGTCTGGTGCCATTG
GAAAGGGTGGCTTCTTCAACAGGATCATCCTGGGATGGACGATCGTCAAG
TTCGACCCGATCAAGGAGGAGCCGATCAGGGACAGCATGGGCAGGTGCGT
TCCTTGCGCGGACGGGGAAGCGGGAGAGCTCTTGGCCCGCATCTCGGGGA
CCTCGGAATTCTCGGGGTACTACAAAAACAAGGAAGCGACAGAGAAGAAG
GTGCTCCGGGAAGCCTTTGGACGCAAAGGGTCGCACTGGTTCCGGTCGGG
CGACTTGATCATGGTGGACGAACAGAGCTACATTCATTTCGTGGATCGGA
TCGGTGACACCTTCCGGTGGAAAGGTGAGAATGTGTCAACGACGGAAGTG
GCGTTGGCCTTGGGACGGGTGGACTGCCTGGAGGAGGTGAATGTGGTGGG
GGTGGAGGTTCCAGGGAAGGACGGAAGGGCATGTCTGGCGGCGATCACAC
TGCGCGACGGGAAAGAGCTTGACTTGGACATGACCTTGGAGGAAGCGAGA
GCACACCTGCCGGCCTACGCTGTGCCACTTTTCCTTCGCGTCTTGAAAAA
GGGGACGCAGGAAACGACAGGGACCTTCAAGCACATGAAGGCCAAGTACC
GTACCGAGGGCATCGACGCGGGGGCGATCGCGGATGACATGTATTGGCTG
GACCCTTCGGAGGGTGTATACAAGCCTTATGGCAAGGCGGAGTACCAGAA
AATCGTGTCTGGCAAAGCGAAACTCTAGATGACACAGTCTTGCTCCGCTG
AAAGCCTGGGAGCGGGGGCATGGCTCGTGGGGGAGATGCAAGAGATAGTT
CACG back to top
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