rna2588, rna2588 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2588
Unique Name	rna2588
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2376
Alignment location	CM002459.1:736739..738487 +

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100120g17.6943.mrna
Orig protein id	gnl\|cribi\|Naga_100120g17.6943
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:736739..738487 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100120g17	gene2475	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2588	rna2588-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28082.1	cds2580	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:736739..738487+
coding sequence from alignment at CM002459.1:736739..738487+

mRNA sequence

>rna2588 ID=rna2588|Name=rna2588|organism=Nannochloropsis gaditana|type=mRNA|length=2376bp
CGGCAGACCACGCCCCTGGCTATCATGCCACCGGCATTTGAAGGCCAAGT
TTATATATATATCCGCGAGCTCAACCCGATTCTGATGCCTGACGGATGAA
TGGAGATTTGTCTACGGCACCATTTTGGTCACTTTCCGTCAGTCCATGCT
GGACAATAATCGAGACGTTTGACAGGAGATTGTCATGAACATGTTTGCGA
GTCAAAGCATGCACCAGGGCCAACATGAAAACCTAACGTACCATACGAAG
TTTCCAAAATGCGTGACAGCTCATCCCCTTCCCTTTCCTGGCAATTTTTT
GATTAGAATGTTTCCGCGTAGTGGCAGGCCTACTGGCCGGCCTATTGGCC
AAGAACACACAAGGAATTTCAACCCTTCAGGCAGAAATACCGTAGTCCTC
GTTATATTAGTCATTATGGGTCTGTCCAACGTCTATCTGTATCTTGGCCC
CACACATTCCCGTCGGGGAATATTTACCACTGATTCATCGGTCAACGACG
GCTTCTCGGAGGCGAACGAACACAAGCTATCGGCCAGACATCCACGATCA
CGTCCGCAGCTTGTGGATGATCCAATCGTCAAGGAGGATACACCTTCTCT
GGCTTATCCGTACGCTGGGCGTGGAAATCCTTTCTCTTCTCATAAAACTA
GGGATCGTACTAAACGAAAGAACGTCCTCTTCATCATGACAGATGACCTG
CGACCATCACTGAGCATCTACAACAAGCCGGTGATTACGCCTGGGTTCGA
ACGTCTAGCCAAGGGCGGAGTTGTTTTTGAACGGAACTACAACCAAGATC
CAATATGTAATCCATCGCGAAACTCGTTGTTGTCAGGTCGCAGGCCGGAT
ACGACGAAGGTGTGGTTGTTCGAGGACACAGTCGCCAGTGACTACGGCAA
TATCTTTAGATATTTCAAAAAGGAGGGTGGATACAAGATGTTAGGCACGG
GAAAGCTCTGGCACTGGACAAGTAGCTTTATCGAGGAATTCGATAACAAG
TACTTTCCAAAGTCGACAGATGCCTGGAACGATGGAACGGATGAAAATTA
CCAGATGATGAATGCATCAGTGCAACCCGACGATAATTGGCCCGAGGAAC
GCTTCTGGGACTACCGCATTGCTTCAGAAGGCATATCGCTCATGAGAGAG
GCGGTAAATACAAAGGATGGCAACCCTTTTTTTCTGGGCGTAGGGTTTCA
TCAGCCTCACCGACCTTGGCACATGCCTCAAAAGTACTGGGACCTTTACG
AAGACAGGTATGTGCCAGTCACGCCGCACACGACATGGCCGATAGATGCG
CCCGGAGTGGCGACGGGAGACATAAATCCCCTTGAAATTGGAATGCTCCC
TGATTCGGAAAAGACCTATGTTGCGGACCCCACGGGCCGCGTGCCTTCTG
ATGCTATCCGCGAAAACGTACGGGGTTACCATGCTTCGATTTCTTTTCTT
GATCATCAAATTCAACGGCTCTTGGACGAACTGGAGAGGCTGAGCCTGGT
GGAGGACACGATAATTGTCTTCTGTGCAGACCACGGTATGAACATTGGCG
ACCATGGTATGTGGGACAAGCGGACTCTGTTTGAAACCAACGCAAGGGTC
CCCCTGATCATTCGGGACCCGGATATTCCCGAAAGTTTTGGGATGAACGC
GTCCGCCTTGGCGGAGAATGTGGACATTTTCCCTACTATGATTGAGATGG
CTGGCTTACCGGACCCCGCTGGTCGCTTGTTTCCTCCGCTGGAGGGCAAG
AGCTTGGTTCCCGTGCTGCGCGATCCTGTCAACGGACGCGTGAAGGACTT
CGCATTGACACAGATTCCGCGATGCTGCAGTCAAGGATGTGGAAATAGAC
CATTAAAAAAAGTGCCATGGTTTGCATGGGAGGTGTGCTCCGGAGGTAAT
CGTGATTGGAACGATTTGAACGAAAGGGTATACATGGGCTACTCGATGCG
CACAGATGAGTGGCGGTACACAGCGTGGGTTCCCTTCAACGCGTCCACGC
ACACCCCTGAATGGACGCAGGCGTGGGGAGGAGAGGAGTTATACGATCAC
CGAGATCCCCGCTGCAACGAAAAGGGTAATTTTGACTCGTGCGAAACTCG
AAATATGGCGAAGGATGTGTCATTGCAGCTGGTCAAAAAGGAACTTTATG
CAAAGATGCGCAGCATTGTAGACACATATAACTACAAACAATGGAAATTG
AAAAGTCAACATCAAAGTGCGAAAAAAGTGGCGGAGCAGCGTCTGCGGTT
ACAGTGAATATATACTTTAGGAAATTAGTGCACGTAGGCGGTTTATGTGG
AAGCTACGCTTTAACGGTGTACTTTTTGAACGAATAAACAGAAAATACGT
AACGTGCAGCGGACATATGTATTCTC

protein sequence of rna2588

>rna2588-protein ID=rna2588-protein|Name=rna2588|organism=Nannochloropsis gaditana|type=polypeptide|length=354bp
MSSILNRLRQSFLRYSVRQRDLQEQADIETALLLTSWWKCITIGHQEDRQ
TLQQEAERMQSMAGYKQVNILRKNLDQQILRMFLAIDAARTVEETTKASR
MHHGFEEINGGTGGSTQAREDWRPPNRRRRPQTSSISRRGEREDMESARE
SARRGRVFKSLRQDLGFTLCHGPSSILSAGRGVFLEGRARIGSLVGIYPG
LVYLPEHLRKAEEVAELFPDPDIFLFQRYDKIVVDGRAAEKMPHNEYALA
HLCNHGKPNVMAVAYDFPQDPLGWGGFPHELRPYIPNAFARPRSLLGSPD
QSALIQSVVLVATTDLEDGEELFLNYRLNPKHGSESLPPWYVPVDAKEDQ
RRWA

mRNA from alignment at CM002459.1:736739..738487+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2588 ID=rna2588|Name=rna2588|organism=Nannochloropsis gaditana|type=mRNA|length=1749bp|location=Sequence derived from alignment at CM002459.1:736739..738487+ (Nannochloropsis gaditana)
ACGAACAGTATACATCAGTATTTAAGCTTCTACCCAGAAGCACGAAGGTA
GCCTCGCTGGTTTCCGGGCATCGTGCCTTTTGGCGCACAAGCAGCCTGAG
GGCTGCGTTTACCTCCTTGCTACGAAGCAACTAGCCTTCAAACACCAATA
TCTTCCGCAATAATTTCCGCAACTCTATCGAATTCTGCTATGAGCTCAAT
TTTAAATCGTTTGCGCCAGAGCTTTCTTCGATATAGCGTACGACAGCGGG
ATTTACAGGTAAATTTGCTCAAAACATTCGCCTATCCGTTGTGCACCGGA
AAAACAAGTGCGACGATCGCGAGAACAAGTCGTTATGAAGTTAGGAACCC
TCTGAATAACGAAATACTTATCATTTGACACACTTTCAAGCCTCGCATGA
ATCAAACAGTTTAACGCAACTTTCATTTTCAACTTTTCTGTTTCAACCAC
AATGGCGCGTCGTGTTTGCAATCAGGAACAAGCAGACATTGAGACCGCTT
TGCTGCTCACATCGTGGTGGAAATGTATCACTATAGGACACCAAGAAGAC
CGTCAAACATTGCAGCAAGAGGCAGAGCGGATGCAAAGCATGGCAGGCTA
CAAGCAAGTAAACATACTTCGAAAAAACCTAGATCAACAGATATTGCGCA
TGTTTTTGGCCATTGATGCAGCCCGCACCGTCGAGGAGACAACTAAAGCA
TCAAGGATGCATCATGGCTTTGAAGAAATTAATGGTGGTACGGGCGGCTC
AACTCAAGCAAGAGAGGACTGGCGGCCACCTAACCGGAGGCGACGGCCCC
AAACAAGTTCCATCTCGCGGcgtggagaaagagaggacatggaaagTGCT
CGTGAGAGCGCCCGAAGAGGGCGTGTGTTTAAATCCTTGCGACAAGATCT
AGGGTTTACACTTTGCCATGGACCTTCCTCAATACTATCAGCTGGAAGGG
GCGTCTTCCTGGAGGGACGTGCTCGCATCGGATCTCTCGTTGGCATCTAT
CCTGGCTTGGTCTACCTGCCTGAGCACCTCCGAAAAGCCGAAGAAGTAGC
AGAGCTCTTTCCGGACCCGGAtatctttctctttcaacGCTATGATAAAA
TCGTGGTTGACgggcgggcggcagagaaGATGCCGCATAATGAATACGCA
TTGGCTCACCTTTGCAACCATGGAAAGCCTAACGTTATGGCTGTTGCGTA
TGATTTTCCTCAGGATCCACTGGGTTGGGGGGGTTTCCCTCACGAGCTGC
GACCATACATACCGAATGCGTTCGCGCGGCCTCGCTCTTTACTAGGTAGC
CCGGACCAGTCAGCCCTGATCCAATCTGTCGTACTGGTTGCCACAACGGA
CCtggaagatggagaagaacTTTTTCTGAATTATCGACTAAATCCCAAGC
ACGGGAGTGAAAGCTTGCCGCCCTGGTACGTGCCTgtggacgcgaaggag
gatcAGCGGCGCTGGGCGTGAGGGGTCTAAAGTCTGAAATCCAGTGGTTA
TCCTAAGAGgtgtgaaggaaaaggacatTTCTTAGGATATATTATTTTtg
tgggaaaaaaaaatcaaaagaCCAAACGTAATTTGAAATGGCTCACGTAG
CAATTTAAGTTAGACATTTTCGAGAATAGTTTCCTTCAACGCATTGTACA
GTTTTTGTTGTCTCGTCTCCCGGTGCTTCTTTGGTTAGAGATATTCAAAT
TTGTCCTTATCCGTGCCTTAAGCCTCTCACTCAAGAACAGAACAAATtg

Coding sequence (CDS) from alignment at CM002459.1:736739..738487+

>rna2588 ID=rna2588|Name=rna2588|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at CM002459.1:736739..738487+ (Nannochloropsis gaditana)
ATGAGCTCAATTTTAAATCGTTTGCGCCAGAGCTTTCTTCGATATAGCGT
ACGACAGCGGGATTTACAGGAACAAGCAGACATTGAGACCGCTTTGCTGC
TCACATCGTGGTGGAAATGTATCACTATAGGACACCAAGAAGACCGTCAA
ACATTGCAGCAAGAGGCAGAGCGGATGCAAAGCATGGCAGGCTACAAGCA
AGTAAACATACTTCGAAAAAACCTAGATCAACAGATATTGCGCATGTTTT
TGGCCATTGATGCAGCCCGCACCGTCGAGGAGACAACTAAAGCATCAAGG
ATGCATCATGGCTTTGAAGAAATTAATGGTGGTACGGGCGGCTCAACTCA
AGCAAGAGAGGACTGGCGGCCACCTAACCGGAGGCGACGGCCCCAAACAA
GTTCCATCTCGCGGcgtggagaaagagaggacatggaaagTGCTCGTGAG
AGCGCCCGAAGAGGGCGTGTGTTTAAATCCTTGCGACAAGATCTAGGGTT
TACACTTTGCCATGGACCTTCCTCAATACTATCAGCTGGAAGGGGCGTCT
TCCTGGAGGGACGTGCTCGCATCGGATCTCTCGTTGGCATCTATCCTGGC
TTGGTCTACCTGCCTGAGCACCTCCGAAAAGCCGAAGAAGTAGCAGAGCT
CTTTCCGGACCCGGAtatctttctctttcaacGCTATGATAAAATCGTGG
TTGACgggcgggcggcagagaaGATGCCGCATAATGAATACGCATTGGCT
CACCTTTGCAACCATGGAAAGCCTAACGTTATGGCTGTTGCGTATGATTT
TCCTCAGGATCCACTGGGTTGGGGGGGTTTCCCTCACGAGCTGCGACCAT
ACATACCGAATGCGTTCGCGCGGCCTCGCTCTTTACTAGGTAGCCCGGAC
CAGTCAGCCCTGATCCAATCTGTCGTACTGGTTGCCACAACGGACCtgga
agatggagaagaacTTTTTCTGAATTATCGACTAAATCCCAAGCACGGGA
GTGAAAGCTTGCCGCCCTGGTACGTGCCTgtggacgcgaaggaggatcAG
CGGCGCTGGGCGTGAATGAGCTCAATTTTAAATCGTTTGCGCCAGAGCTT
TCTTCGATATAGCGTACGACAGCGGGATTTACAGGAACAAGCAGACATTG
AGACCGCTTTGCTGCTCACATCGTGGTGGAAATGTATCACTATAGGACAC
CAAGAAGACCGTCAAACATTGCAGCAAGAGGCAGAGCGGATGCAAAGCAT
GGCAGGCTACAAGCAAGTAAACATACTTCGAAAAAACCTAGATCAACAGA
TATTGCGCATGTTTTTGGCCATTGATGCAGCCCGCACCGTCGAGGAGACA
ACTAAAGCATCAAGGATGCATCATGGCTTTGAAGAAATTAATGGTGGTAC
GGGCGGCTCAACTCAAGCAAGAGAGGACTGGCGGCCACCTAACCGGAGGC
GACGGCCCCAAACAAGTTCCATCTCGCGGcgtggagaaagagaggacatg
gaaagTGCTCGTGAGAGCGCCCGAAGAGGGCGTGTGTTTAAATCCTTGCG
ACAAGATCTAGGGTTTACACTTTGCCATGGACCTTCCTCAATACTATCAG
CTGGAAGGGGCGTCTTCCTGGAGGGACGTGCTCGCATCGGATCTCTCGTT
GGCATCTATCCTGGCTTGGTCTACCTGCCTGAGCACCTCCGAAAAGCCGA
AGAAGTAGCAGAGCTCTTTCCGGACCCGGAtatctttctctttcaacGCT
ATGATAAAATCGTGGTTGACgggcgggcggcagagaaGATGCCGCATAAT
GAATACGCATTGGCTCACCTTTGCAACCATGGAAAGCCTAACGTTATGGC
TGTTGCGTATGATTTTCCTCAGGATCCACTGGGTTGGGGGGGTTTCCCTC
ACGAGCTGCGACCATACATACCGAATGCGTTCGCGCGGCCTCGCTCTTTA
CTAGGTAGCCCGGACCAGTCAGCCCTGATCCAATCTGTCGTACTGGTTGC
CACAACGGACCtggaagatggagaagaacTTTTTCTGAATTATCGACTAA
ATCCCAAGCACGGGAGTGAAAGCTTGCCGCCCTGGTACGTGCCTgtggac
gcgaaggaggatcAGCGGCGCTGGGCGTGA

Synonyms

Publications