rna2579, rna2579 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2579
Unique Name	rna2579
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1572
Alignment location	CM002459.1:711751..714534 +

Link to JBrowse

Properties


Property Name	Value
Product	protein of unknown function DUF1995
Orig transcript id	gnl\|cribi\|Naga_100036g3.2522.mrna
Orig protein id	gnl\|cribi\|Naga_100036g3.2522
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:711751..714534 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g3	gene2466	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2579	rna2579-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28102.1	cds2571	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:711751..714534+
coding sequence from alignment at CM002459.1:711751..714534+

mRNA sequence

>rna2579 ID=rna2579|Name=rna2579|organism=Nannochloropsis gaditana|type=mRNA|length=1572bp
TGAGGGCGCGTGTCACATTTTCTGCTTTTCACACCGCGGCTGCCCTCTTC
CTAGCAATCAATTTAATATGCCCTTATAAACTCAAGAATTGATGTGCGCG
AGACGGATACCATCATGAGTGCGAGTGTCAGGCCCCGGTTCTGTCTCACC
ATGTATCTTTCTTTTCTTTTTCCGACTTCAAAGATCCGCCTTGTCGCACA
TCAAGTATCATGTTCAAGCTCCTCACCGCTACGCTGGCTGTGGGCGCTAC
CGCCTTCATGGCCCCCACACGTCCTGCTATCAAGGCCGTCCGTGGACCCT
CAATGTCCATGATGACGGGGGCGACGATGGGAAAGATCGATGCCATGTTT
GAGGGCGCCAGCCCCTTCTACCAGGACGTGTTGCGCCGTCGTCCTGAGAC
AGGTCACGGTGGAGGAATCATCATCGGTGGCGGTGGTGATGGTGAGGGCA
CTGGCGGTGGAGGGGGCGACGGGGGCGGCGGGGAAGGCAACAAGGGCGGT
GAGAACCCGTTGCAGTTGCTGTGGAAGGGGTACAACCAGCTCCTCAAGGA
TCAGCCGCTGCTCACGAAAGCCCTGACTTCCTTCGTGGGCTTCTCTGTCG
GGGATCTGCTCGCCCAGAAATTCATCGACAAGTCCGAAGTCGTGGACCTG
AAACGCCTGCTCAAGCTTGCATTCTTCGGGCTCCTGGTCCATGGCCCCAC
CGGCCACTACTTCTACGGTTTCCTGGACGGGAAGATGCCCGGCACTAGCG
CGGTGACCGTCGCCTCCAAAGTGGCCATCGACCAGCTGCTGTGGAACCCG
ATCTTTGGAACCATGTTCTTCGGGTGGCTGGGTCTGACCGAGGGGCAGAA
CCTGGAAGGCATCAAGAATCGCATCGAGAAGGACCTGTGGGCTTCGGTCA
AGGGCTCTTGGACAGTCTGGCCCATCGCGCACGCCATTAACTTCCGATTC
ATCCCCAATTCCCAGCGACTGCTCTACATCAACAGCGTCCAGATTGGCTA
CAACATGTTCCTTTCCTTCCTTGCAAACCGCAACGCCGCCCCGGAGCCCG
CCCCCGTCGCGGCCGGGAAGAAGAAGTGAAAGAGCTTTGCAGCAGGCCGC
AAAGCGAGCCCTAGGGTTGTGTGTTGATTTTTTCAGTACCAGCGTGTGGG
CAGGGATTGAGAATACATGCGAGCGAGCGTGATGTGGGAAAAAGAGAACA
AGATAAAGGCAGTGCGTCAAGCCCAATAAAGAAGCAGCTCATGAGCACTC
GTGAGTGAGTGCGTGTTATATGGGTTCTGTTTGTAATAAGTTTCCAGATG
GTTGTGTTTTAATCCGAGGCCAGGGATGTGAAGAAAAAAGTCGGGATTGG
GAAAGCTGAGAAACGACAAAAGTCTCTTTCGTTTAAGAGACCTTTAAAGC
TAAAAAGAGATTTTCATGACCAACGGCTCGCGCTTCTTTCCGTGTTCGAA
AGTATGCACGTTAATTCTCATGCCCGAGATGTCAAGTAAGTGGTTCAGAG
CCTCATGGTCCGCGACACCGTATGTCACCCCGTATCACGAATCAGAAAAG
CAAAACGTGGCAAGAGTAACGG

protein sequence of rna2579

>rna2579-protein ID=rna2579-protein|Name=rna2579|organism=Nannochloropsis gaditana|type=polypeptide|length=477bp
MGREAARRDVLRFTSLLLLGIGGANAFSRPPKTCSPSISVYPARRPSDHA
TFLPLPAVANPAEKAAVNSAVEHEGQRKLAQDLVTIQEYLNRDHKDLLCR
WARAFCPVGDEISKANFWRGDAMTILDTQCTQVRLDGLDLRVAVAEQGIF
GKPKIREVDQSITFSTQRIRSRPADVIRAMISMASTIGDEDSTASLYKIP
VDDGKWVIPNNLYMNGVPWKPFTRQFFYNRIVRAVDAAIRDPSFPNRMAI
KFLTPESNPAFDTYRIGTILELVRELAFHQVSCGKRVKLCVQQKMGEGIF
KGLPISLNGCRFILENMDWQSKEGEEKEGVVGTQIHFGEVGEHVVEEEDD
VFILIAPQNVVGVSIIPLLEAMARKAGDRPFIVLNPSLRDRPSAGDVMQV
RGREERMAFGKTFKTVFAFETQHDKGMFKINGAVGKAGHDQPWIRYVLID
NQEGLQNVNNRREVYEPVQVTEREPAD

mRNA from alignment at CM002459.1:711751..714534+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2579 ID=rna2579|Name=rna2579|organism=Nannochloropsis gaditana|type=mRNA|length=2784bp|location=Sequence derived from alignment at CM002459.1:711751..714534+ (Nannochloropsis gaditana)
CGCGAGACCATTCTGTGGCCACCTTCTTCGTTTTCGCAATCCCGCCTTAG
ATCAGGGGTGCTGTTTTCATTGACGCACTCAGCTTTCTCGTGATAGGGTG
AAAGAATATATTGTGCCATCTTCCTCAGGGGGATCTTTTCGCGGTCGACA
CGAATAAAAACGTTCCTCCGGACCTCGAaccatgggggaggggggagttA
TGTCTCAAGAAACCAAAAAAGATCAACCCTACTCTCTCCAATACAacaga
ggaaaggaaagcacgCCAACCACGTTCCTCATAGTAAACATGCATGAATG
ACGCGAGGATGGCTTTATATTTTGGGTCGGTGCTTGGCGAATATTATCCC
CCGTTGTCCGTCTCTGTCCGTTTAAGACATGGACTCTGTCTCAGTGCGCT
ACCCCCGCTTATTTCGAGTTCATtgtggaaaaagaaaaatttCACTCGAA
AAAGACTGTAACTTGATCTCTACAAATTATTTCCTTGCTAAAACAAAGAC
GGGAAATATGCTTTTTCGAAAGACGTAATCCGTGGTACCCCGTAGGTTTG
TCGAGAAAAGTGATTTTTCTGAGATCGTATACCAGCTTTCTTCGTCAATT
TATATTCAAGTCAAGAAGAAGACCTTAACCGAAACAAACTAGTTTCCACC
ACGTCGCCTACGCAGCTACCAAGTCGGGCTCCTGAGAGCTCGAGCTCGCT
GACCGCGAAGGGCTTTCTTGAAGCAATGCACTCGCAGCGGTCTCGCAATG
CACTGAACTTGTCGAGTGCGCGCGGCGTTGTGCCTCCTCATGGTACGGGG
ATCTGTGTTTTTTCACCTGATCAAACGGCATGGCACATGCTCATAATTCC
AAATGTGTCTGACTGTCGTCCGATTCTCAACATAAcaacaacctcctccc
ttcggaCCTCGTTCAAGCGTGTATCATTTTATCTTGCTTAACAATCTTCG
ACTGTAATGGGCCGCGAAGCAGCTAGACGAGATGTGTTGCGGTTTACTTC
GCTTCTTCTACTTGGTATAGGTGGCGCAAACGCATTTTCACGGCCTCCAA
AGACCTGCTCTCCTAGCATCTCGGTCTACCCGGCCCGACGTCCTTCCGAT
CACGCAACTTTCTTGCCTCTTCCGGCGGTGGCCAACCCCGCGGAAAAAGC
TGCTGTCAATTCTGCAGTTGAACATGAGGGACAGCGCAAGCTCGCTCAAG
ACCTGGTGACCATTCAGGAATATTTGAACCGCGACCATAAAGATCTACTT
TGCCGCTGGGCAAGAGCTTTCTGCCCTGTAGGGGACGAAATCAGCAAAGC
CAATTTTTGGCGTGGCGATGCCATGACCATCTTAGACACACAATGTACGC
AAGTTCGACTGGATGGCTTGGATTTGCGCGTGGCTGTTGCCGAACAAGGC
ATATTCGGTAAGCCGAAAATTAGGGAAGTCGACCAGTCCATCACCTTTTC
GACACAGAGGATCCGCTCCAGGCCCGCGGACGTTATACGGGCCATGATAA
GCATGGCCTCGACGATCGGTGACGAGGACTCGACCGCCAGCCTCTACAAG
ATCCCTGTGGACGACGGGAAGTGGGTGATCCCCAACAACCTGTACATGAA
CGGCGTGCCCTGGAAGCCGTTCACCAGGCAATTCTTCTATAATCGAATAG
GTACGTGTCCCTTTGTTTCTGCTCTCTCATTTCGATTGCAGTGCCAACAC
TGCTCACGACGCCTGCTCTCTTCCAACGCCCTcgacactccctcccccag
tccGCGCCGTGGACGCGGCCATCAGAGACCCGTCCTTTCCGAACCGCATG
GCCATCAAGTTCCTCACGCCGGAGAGCAATCCCGCCTTCGACACCTACCG
GATCGGCACGATCTTGGAGCTGGTGCGAGAGCTGGCGTTCCACCAAGTGA
GCTGCGGGAAGCGCGTCAAGCTCTGCGTGCAGCAgaagatgggggagggg
atctTCAAGGGCCTGCCCATCTCTCTGAACGGGTGTCGCTTCATTTTGGA
GAACATGGACTGGCaatcgaaggagggggaggagaaggaaggggtggtgg
ggacGCAGATCCACTTCGGAGAGGTGGGCGAgcacgtggtggaggaggag
gacgacgtctTCATCCTGATCGCCCCCCAGAACGTCGTGGGCGTCTccat
catccccctcctcgaggccatggcccgcAAGGCAGGCGACCGTCCCTTCA
TTGTCCTGAACCCGAGCCTCAGGGACCGACCCAGCGCGGGCGACGTGATG
CAAGTGCGTGGCCGGGAGGAGCGGATGGCCTTCGGCAAGACCTTCAAGAC
CGTCTTCGCTTTTGAGACCCAGCACGACAAGGGGATGTTCAAGATCAACG
GTGCTgtggggaaggccgggcACGACCAGCCCTGGATCCGCTACGTGCTG
ATAGACAATCAGGAGGGGCTCCAGAATGTGAATAACCGCAGGGAGGTCTA
CGAGCCCGTCCAGGTCACTGAGCGGGAACCGGCAGACTAGGCgccaaggg
agggcaaggggaagcaaAGGGGCTATTGTGACGAGAACGAGGTATCCGCC
AGCTTTCGTTCGAGTTGTATCATTTCTTTCGTTGAGTGAGGTCAGCCTGT
ACACGATGCAAGGACTGCCTGTGCATTGGTTGTTACCGGACACCgggcct
tgtccctccctccgatcCGCCGCCTCAACCTCTCTGCATACCATAGACGT
CCAGCCTATACATAATGAAGATGATGTCTTTGTATTGTTCATTACCGGAC
ATTAGACGCGTTCTCGCCCTCACATCCGCCGCCT

Coding sequence (CDS) from alignment at CM002459.1:711751..714534+

>rna2579 ID=rna2579|Name=rna2579|organism=Nannochloropsis gaditana|type=CDS|length=2868bp|location=Sequence derived from alignment at CM002459.1:711751..714534+ (Nannochloropsis gaditana)
ATGGGCCGCGAAGCAGCTAGACGAGATGTGTTGCGGTTTACTTCGCTTCT
TCTACTTGGTATAGGTGGCGCAAACGCATTTTCACGGCCTCCAAAGACCT
GCTCTCCTAGCATCTCGGTCTACCCGGCCCGACGTCCTTCCGATCACGCA
ACTTTCTTGCCTCTTCCGGCGGTGGCCAACCCCGCGGAAAAAGCTGCTGT
CAATTCTGCAGTTGAACATGAGGGACAGCGCAAGCTCGCTCAAGACCTGG
TGACCATTCAGGAATATTTGAACCGCGACCATAAAGATCTACTTTGCCGC
TGGGCAAGAGCTTTCTGCCCTGTAGGGGACGAAATCAGCAAAGCCAATTT
TTGGCGTGGCGATGCCATGACCATCTTAGACACACAATGTACGCAAGTTC
GACTGGATGGCTTGGATTTGCGCGTGGCTGTTGCCGAACAAGGCATATTC
GGTAAGCCGAAAATTAGGGAAGTCGACCAGTCCATCACCTTTTCGACACA
GAGGATCCGCTCCAGGCCCGCGGACGTTATACGGGCCATGATAAGCATGG
CCTCGACGATCGGTGACGAGGACTCGACCGCCAGCCTCTACAAGATCCCT
GTGGACGACGGGAAGTGGGTGATCCCCAACAACCTGTACATGAACGGCGT
GCCCTGGAAGCCGTTCACCAGGCAATTCTTCTATAATCGAATAGtccGCG
CCGTGGACGCGGCCATCAGAGACCCGTCCTTTCCGAACCGCATGGCCATC
AAGTTCCTCACGCCGGAGAGCAATCCCGCCTTCGACACCTACCGGATCGG
CACGATCTTGGAGCTGGTGCGAGAGCTGGCGTTCCACCAAGTGAGCTGCG
GGAAGCGCGTCAAGCTCTGCGTGCAGCAgaagatgggggaggggatctTC
AAGGGCCTGCCCATCTCTCTGAACGGGTGTCGCTTCATTTTGGAGAACAT
GGACTGGCaatcgaaggagggggaggagaaggaaggggtggtggggacGC
AGATCCACTTCGGAGAGGTGGGCGAgcacgtggtggaggaggaggacgac
gtctTCATCCTGATCGCCCCCCAGAACGTCGTGGGCGTCTccatcatccc
cctcctcgaggccatggcccgcAAGGCAGGCGACCGTCCCTTCATTGTCC
TGAACCCGAGCCTCAGGGACCGACCCAGCGCGGGCGACGTGATGCAAGTG
CGTGGCCGGGAGGAGCGGATGGCCTTCGGCAAGACCTTCAAGACCGTCTT
CGCTTTTGAGACCCAGCACGACAAGGGGATGTTCAAGATCAACGGTGCTg
tggggaaggccgggcACGACCAGCCCTGGATCCGCTACGTGCTGATAGAC
AATCAGGAGGGGCTCCAGAATGTGAATAACCGCAGGGAGGTCTACGAGCC
CGTCCAGGTCACTGAGCGGGAACCGGCAGACTAGATGGGCCGCGAAGCAG
CTAGACGAGATGTGTTGCGGTTTACTTCGCTTCTTCTACTTGGTATAGGT
GGCGCAAACGCATTTTCACGGCCTCCAAAGACCTGCTCTCCTAGCATCTC
GGTCTACCCGGCCCGACGTCCTTCCGATCACGCAACTTTCTTGCCTCTTC
CGGCGGTGGCCAACCCCGCGGAAAAAGCTGCTGTCAATTCTGCAGTTGAA
CATGAGGGACAGCGCAAGCTCGCTCAAGACCTGGTGACCATTCAGGAATA
TTTGAACCGCGACCATAAAGATCTACTTTGCCGCTGGGCAAGAGCTTTCT
GCCCTGTAGGGGACGAAATCAGCAAAGCCAATTTTTGGCGTGGCGATGCC
ATGACCATCTTAGACACACAATGTACGCAAGTTCGACTGGATGGCTTGGA
TTTGCGCGTGGCTGTTGCCGAACAAGGCATATTCGGTAAGCCGAAAATTA
GGGAAGTCGACCAGTCCATCACCTTTTCGACACAGAGGATCCGCTCCAGG
CCCGCGGACGTTATACGGGCCATGATAAGCATGGCCTCGACGATCGGTGA
CGAGGACTCGACCGCCAGCCTCTACAAGATCCCTGTGGACGACGGGAAGT
GGGTGATCCCCAACAACCTGTACATGAACGGCGTGCCCTGGAAGCCGTTC
ACCAGGCAATTCTTCTATAATCGAATAGtccGCGCCGTGGACGCGGCCAT
CAGAGACCCGTCCTTTCCGAACCGCATGGCCATCAAGTTCCTCACGCCGG
AGAGCAATCCCGCCTTCGACACCTACCGGATCGGCACGATCTTGGAGCTG
GTGCGAGAGCTGGCGTTCCACCAAGTGAGCTGCGGGAAGCGCGTCAAGCT
CTGCGTGCAGCAgaagatgggggaggggatctTCAAGGGCCTGCCCATCT
CTCTGAACGGGTGTCGCTTCATTTTGGAGAACATGGACTGGCaatcgaag
gagggggaggagaaggaaggggtggtggggacGCAGATCCACTTCGGAGA
GGTGGGCGAgcacgtggtggaggaggaggacgacgtctTCATCCTGATCG
CCCCCCAGAACGTCGTGGGCGTCTccatcatccccctcctcgaggccatg
gcccgcAAGGCAGGCGACCGTCCCTTCATTGTCCTGAACCCGAGCCTCAG
GGACCGACCCAGCGCGGGCGACGTGATGCAAGTGCGTGGCCGGGAGGAGC
GGATGGCCTTCGGCAAGACCTTCAAGACCGTCTTCGCTTTTGAGACCCAG
CACGACAAGGGGATGTTCAAGATCAACGGTGCTgtggggaaggccgggcA
CGACCAGCCCTGGATCCGCTACGTGCTGATAGACAATCAGGAGGGGCTCC
AGAATGTGAATAACCGCAGGGAGGTCTACGAGCCCGTCCAGGTCACTGAG
CGGGAACCGGCAGACTAG

Synonyms

Publications