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Properties
| Property Name | Value |
|---|
| Product | small nuclear ribonucleoprotein component |
| Orig transcript id | gnl|cribi|Naga_100036g5.2545.mrna |
| Orig protein id | gnl|cribi|Naga_100036g5.2545 |
| Gene | Snu114 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:706402..709741 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2577 ID=rna2577|Name=rna2577|organism=Nannochloropsis gaditana|type=mRNA|length=1235bp
ACTTCCCGCCCCCGGCCTGCCGACCGCACCGCTGCAGAGTTTTCTATATT
GCACACTTTCAAAATTGAAAGAAGTTCTTGCGTCAGGAACGGGAGGCATC
CATCGTTGGTAGTTTTGCAGGGCAAGCGGGACGAATGCGTGCGGCGACGG
GTATCTTGCCGTGGCACCCAAGGCGAGTTCTTCCTGGCCCCGACCCGCAG
GAAAGCACATGATCCTTGTCGACACGCATTGCCACATCCACCGATGGGGG
AATGGTGAGGTTGCAGCATCGCCAGCGTATACTAAAAGGGGAAATAATGT
CCGGAATCCTACTAGAATGGCCTCAGGCGGGAACGATTTCGACAATTCAA
CGGCTGATCAATATATTCATCCTTTGTATTGCTTGATGGCCGTTGAGGAA
GCGGATTGGTCAGGTCTACTGGCCATTTCAGGGAGAGACCGAAAAGAGAA
GAAGCCGCTCCTGCAGGACGTGTCTCAAGACACCAAAGAGGTAGTAGCAG
TGGGTTTGGGAATTCACCCGTGGAAAACACAGAGTGTGAAATCAGGGTGG
GAGGGGCGCTTAAAAGAAGCCTTGGAGCGGGATCCAACCCTTATCGTGGG
TGAGATCGGATTGGACAAGGCGGGGGAGTCGGGCAAGAAGTCTTGGGAGG
AGCAGCGAAAAATATTCGAGCTGCAAATGAAACTTGCTGCTGAGCTAAGA
AGACCGGTTTCGGTGCATTGTGTACGGGCATATGGTATCGTGTACGAGTG
GCTCAAAGGGCGGTCCGCGGCCGAGTTGCCCCCTTCAGTGGCATTCCATT
CTTACACAGGTTCGCTCGATATGGCGGGCGCTTTTTTGCGTCTAGAACAT
CTGCAAGGAAGCGTTTTTTTTGGCTTCTCAGCCGCTGTATGTCTGCGCTA
TCCAGCGGCTGAGGCAAAGCTACGCCAAGTGTTGCCGATCCTGCCAAAGG
AAAGTCTGTTGCTCGAGTCGGACCTGGACGACCGCGAGGCTGTCCCCGGG
GCCATGAACACCATCTGTGACGTGGTTGCCGAGGTCAAGGGCATGGAGCG
GAATGTGTTGGCAGAGGTCACGACGAAGAACGCCGAACGCTTTTTGAGGC
GGGCGTTGCGGTAGAGGTATCAAGGGTGGAAAGTTGTGAATTAGTACATG
GTCCTCTTGTAAAGCGCACGCTTGGTGCACCTCATCAAATGGATAACCAA
ACCTGTTCGATTAAAAAATGAAACGGCTGAAAACT back to topprotein sequence of rna2577 >rna2577-protein ID=rna2577-protein|Name=rna2577|organism=Nannochloropsis gaditana|type=polypeptide|length=1000bp
MEDELYDEFGNYIGGGLDDSSEEEEEEEEEEEEEDGMNGFGDEDEGADGM
ERDDVLATMEANGASSSIVLHEDKKYYPEMEEVYPGVNTVVLDEDAQGLD
EPIIQPIRPKKFSTLLSEKELPQTRYTPEFLTTLMETPTLLRNVCVMGAL
HHGKTLLMDLLIQQTQEAAWDPSKEVRYTDTRKDEQERALSIKSTPVSLV
LEDTRGKSFLLNVLDTPGMVNFSDEVSAALRACDGALLVVDAVEGVMMQT
ERLIKQALREQLALVLVINKVDRLILELKLPPADAYYKLKHTIEEVNACI
ERHTPNALVRRPQRLSPALGNVAFASAVHGWCFSLGSFASLYASYHKLGD
QFETTEFAKRLWGNAYLDEASRTFRKQPPHPEADRSFVQFILDPLYKIYS
HTLGEDAAELTEVIRELGVRVRREELHLDPKPLLKLVLSKFLGPPTGLVD
MLARHVPSPVTAAAAKVEAVYTGAQDSEAALAMKRCDPRGPLMLHVVKLY
SAPDGESFQSFGRVYSGTITAGQQVRVLGEAYTLEDEEDMAVREVKSLSI
GQGRYRLEVSTARPGNWVLLEGVDGPISKTATLIEAKGNDEAAIFKPLKF
DVAPVLKLAVEPLNPAELPKMVEALRKIRKSYPAAQTKVEESGEHVILGT
GELYLDCIMHDLRHLHASLEVKVADPVVSFCETVRETSSLRCFAETPNKQ
NQLHMIAEPLEAGIARDIEEGAVSTDWDRRAVGDFFHAKYGWDLLTARNI
WAFGPDAQGANVLINDTMPSEVDQRLLDNVKDSIVQGFQWGCREGPLCDE
PIRNVKFKILDATIAPEPVHRGGGQVIPTARRVAYSAFLLATPQLMEPYF
KVEVQCPADCVDAIHLVLQRRRGHVKEDRPKPGTPFYTVEAFLPAIDSFG
FETDLRAYTQGQAFCSQVFDHWKEVPGDPLDREVVLHPLEPAPINSLARD
FMVKTRRRKGLSEDVMISKYFDAELLQSLANQQAEAAALEMGGAGFGGYY back to topmRNA from alignment at CM002459.1:706402..709741+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2577 ID=rna2577|Name=rna2577|organism=Nannochloropsis gaditana|type=mRNA|length=3340bp|location=Sequence derived from alignment at CM002459.1:706402..709741+ (Nannochloropsis gaditana)
TGCAATATAGAAAACTCTGCAGCGGTGCGGTCGGCAggccgggggcggga
agTGTTTACCCACTCGTCTGCGCTTcacgcgcctcctcccatcaCAAGCA
GGACTCACTCCCGAAGACAAGAAGTGAGTGCACTGTGCAGGCTTTTTCTT
AGTCTCTCACACACCCTCTCCGACTCCTCAGCCTTACAGTTGCACATAGA
AGTGACATTGTCTGCACGTGGGGCAGTATGGAGGACGAGCTCTATGACGA
GTTCGGGAATTACATCGGCGGGGGCCTGGACGAtagcagcgaggaggagg
aagaggaagaggaagaggaagaggaagaagatggcatGAATGGCTTtggg
gacgaggatgaaggcgCAGATGGTATGGAAAGAGACGATGTTTTGGCAAC
GATGGAGGCGAACGGGGCGTCTAGCAGCATCGTGCTTCATGAAGACAAGA
AGTACTACccagagatggaggaggtctaCCCGGGCGTGAACACCgtggtg
ctggacgaggatgCTCAAGGCTTGGACGAACCGATTATTCAACCCATTCG
TCCCAAAAAGTTTTCCACACTTTTATCGGAAAAAGAACTGCCGCAGACGC
GGTACACGCCCGAATTTTTGACCACGCTGATGGAgacccccaccctcctc
cgcaaTGTCTGCGTCATGGGGGCGTTGCACCACGGGAAAACCCTGCTCAT
GGATCTTCTCATCCAACAAACACAAGAAGCAGCCTGGGACCCGAGTAAGG
AGGTTCGGTACACGGACACCCGCAAAgacgagcaggagcgggCGCTGAGC
ATCAAGTCCACGCCCGTGTCgttggtgctggaggacacGCGAGGGAAGTC
CTTTCTGCTCAACGTGCTCGACACCCCCGGCATGGTCAACTTCTCCGACG
AAGTCAGTGCGGCCCTGCGAGCCTGTGATGGGGCGCTCTTAGTGGTGGAT
GCGGTGGAAGGAGTAATGATGCAGACAGAGCGCCTGATCAAGCAGGCCTT
AAGGGAGCAATTAGCCCTCGTGCTCGTCATCAACAAGGTAGACCGTCTCA
TTTTGGAGCTCAAGCTCCCGCCTGCCGACGCCTACTACAAGCTTAAGCAC
ACCATCGAGGAGGTGAATGCCTGCATCGAGCGGCACACGCCCAACGCCCT
TGTCCGGCGCCCGCAGCGGCTTTCTCCGGCGCTAGGGAACGtggccttcg
cctccgccgtgCACGGTTGGTGCTTCTCGCTGGGCTCGTTTGCCTCGCTC
TATGCCTCGTATCACAAGCTTGGTGACCAGTTTGAGACCACGGAGTTTGC
CAAGCGGCTCTGGGGCAACGCCTACTTGGACGAGGCCTCGAGGACCTTCC
GGAAGCAGCCCCCGCACCCAGAGGCCGACCGCTCCTTCGTACAGTTCATC
CTCGATCCCTTGTACAAAATATACTCGCATACCCTAGGCGAGGACGCCGC
GGAGCTGACTGAGGTGATTCGAGAGCTGGGAGTGCGCGTGCGTCGGGAAG
AACTGCACCTGGACCCAAAGCCCTTGCTGAAGCTCGTCCTCAGCAAGTTC
CTGGGCCCCCCCACCGGCCTGGTCGACATGCTGGCCCGccacgtcccctc
ccccgtcaccgccgcggccgccaaggtGGAAGCTGTGTACACGGGTGCAC
AGGACTCGGAGGCGGCCCTGGCGATGAAACGCTGCGACCCGCGCGGCCCG
CTGATGTTGCACGTGGTCAAGCTGTACTCCGCCCCCGACGGGGAGAGCTT
CCAGTCCTTCGGGAGGGTCTACAGCGGGACCATCACTGCAGGGCAGCAGG
TGCGGGTCCTGGGGGAGGCATACActttggaggacgaggaggacatggcg
gtGCGGGAAGTGAAGAGTCTGAGCATAGGGCAGGGCAGGTACAGGCTGGA
GGTGAGCACGGCGCGCCCGGGCAATTGGGTCCtgctggagggggtggatg
gGCCCATCAGCAAGACGGCGACCCTGATCGAGGCCAAAGGGAACGACGAG
GCAGCCATTTTCAAGCCCCTTAAGTTCGATGTGGCGCCCGTTTTAAAGCT
AGCGGTGGAGCCGTTGAACCCCGCGGAGCTTCCcaagatggtggaggccc
tgcgGAAGATACGGAAAAGCTACCCGGCGGCGCAAACGAAAGTGGAAGAA
TCCGGTGAGCACGTGATCTTGGGCACGGGGGAACTGTATTTGGACTGCAT
CATGCACGACCTCCGGCATCTGCACGCGAGCCTGGAGGTAAAGGTGGCGG
ACCCGGTCGTCTCGTTCTGCGAGACGGTGCGTGAGACCTCGTCCTTGCGC
TGTTTCGCCGAGACGCCCAACAAGCAGAACCAGCTGCACATGATCGCCGA
GCCTCTGGAAGCGGGCATCGCGCGCGACATCGAAGAAGGGGCGGTGTCGA
CGGACTGGGACAGGCGGGCGGTCGGGGACTTCTTCCACGCCAAGTACGGA
TGGGATCTCTTGACCGCCCGCAACATTTGGGCATTCGGGCCGGACGCGCA
AGGGGCCAACGTCCTGATCAATGACACCATGCCGTCCGAGGTGGACCAAC
GGCTCTTGGACAACGTCAAGGACTCCATCGTCCAAGGTTTTCAGTGGGGG
TGTCGCGAAGGCCCTCTTTGCGACGAGCCCATTCGGAACGTGAAGTTCAA
AATTTTGGACGCAACGATTGCTCCCGAGCCCGTCCACCGCGGAGGGGGTC
AGGTTATTCCCACGGCTCGCCGCGTCGCCTACTCGGCCTTCTTGCTGGCC
ACGCCCCAGTTAATGGAGCCCTATTTCAAGGTGGAAGTGCAGTGCCCGGC
GGACTGTGTTGATGCCATCCATCTTGTCCTCCAACGGCGCCGAGGTCACG
TGAAAGAAGACCGTCCGAAGCCAGGAACCCCTTTCTATACAGTCgaagcc
tttctccccgcgATCGACTCGTTTGGCTTTGAGACTGATCTGCGCGCGTA
CACGCAGGGGCAGGCCTTCTGCTCCCAGGTCTTTGACCATTGGAAAGAGG
TGCCCGGAGATCCCTTGGACAGGGAGGTAGTCTTGCACCCACTCGAGCCT
GCGCCGATCAATTCTTTGGCCCGTGATTTCATGGTCAAGACAAGGCGACG
TAAGGGGTTGAGTGAAGACGTGATGATAAGCAAATATTTCGATGCAGAGC
TCCTGCAGAGTCTTGCGAACCAacaggcggaggcggcggctttgGAGATG
GGTGGGGCTGGATTTGGAGGCTACTACTAATGGTGACCACAGGCAGAGAT
GGCAGCACTATAGAGAGAAGACATCTTTCAAAAAGTCAAAACGAGACAGT
GAAGCCCAGAAACCGTCCTTGTTCCGTTACTCTTGCCACG back to topCoding sequence (CDS) from alignment at CM002459.1:706402..709741+ >rna2577 ID=rna2577|Name=rna2577|organism=Nannochloropsis gaditana|type=CDS|length=3003bp|location=Sequence derived from alignment at CM002459.1:706402..709741+ (Nannochloropsis gaditana)
ATGGAGGACGAGCTCTATGACGAGTTCGGGAATTACATCGGCGGGGGCCT
GGACGAtagcagcgaggaggaggaagaggaagaggaagaggaagaggaag
aagatggcatGAATGGCTTtggggacgaggatgaaggcgCAGATGGTATG
GAAAGAGACGATGTTTTGGCAACGATGGAGGCGAACGGGGCGTCTAGCAG
CATCGTGCTTCATGAAGACAAGAAGTACTACccagagatggaggaggtct
aCCCGGGCGTGAACACCgtggtgctggacgaggatgCTCAAGGCTTGGAC
GAACCGATTATTCAACCCATTCGTCCCAAAAAGTTTTCCACACTTTTATC
GGAAAAAGAACTGCCGCAGACGCGGTACACGCCCGAATTTTTGACCACGC
TGATGGAgacccccaccctcctccgcaaTGTCTGCGTCATGGGGGCGTTG
CACCACGGGAAAACCCTGCTCATGGATCTTCTCATCCAACAAACACAAGA
AGCAGCCTGGGACCCGAGTAAGGAGGTTCGGTACACGGACACCCGCAAAg
acgagcaggagcgggCGCTGAGCATCAAGTCCACGCCCGTGTCgttggtg
ctggaggacacGCGAGGGAAGTCCTTTCTGCTCAACGTGCTCGACACCCC
CGGCATGGTCAACTTCTCCGACGAAGTCAGTGCGGCCCTGCGAGCCTGTG
ATGGGGCGCTCTTAGTGGTGGATGCGGTGGAAGGAGTAATGATGCAGACA
GAGCGCCTGATCAAGCAGGCCTTAAGGGAGCAATTAGCCCTCGTGCTCGT
CATCAACAAGGTAGACCGTCTCATTTTGGAGCTCAAGCTCCCGCCTGCCG
ACGCCTACTACAAGCTTAAGCACACCATCGAGGAGGTGAATGCCTGCATC
GAGCGGCACACGCCCAACGCCCTTGTCCGGCGCCCGCAGCGGCTTTCTCC
GGCGCTAGGGAACGtggccttcgcctccgccgtgCACGGTTGGTGCTTCT
CGCTGGGCTCGTTTGCCTCGCTCTATGCCTCGTATCACAAGCTTGGTGAC
CAGTTTGAGACCACGGAGTTTGCCAAGCGGCTCTGGGGCAACGCCTACTT
GGACGAGGCCTCGAGGACCTTCCGGAAGCAGCCCCCGCACCCAGAGGCCG
ACCGCTCCTTCGTACAGTTCATCCTCGATCCCTTGTACAAAATATACTCG
CATACCCTAGGCGAGGACGCCGCGGAGCTGACTGAGGTGATTCGAGAGCT
GGGAGTGCGCGTGCGTCGGGAAGAACTGCACCTGGACCCAAAGCCCTTGC
TGAAGCTCGTCCTCAGCAAGTTCCTGGGCCCCCCCACCGGCCTGGTCGAC
ATGCTGGCCCGccacgtcccctcccccgtcaccgccgcggccgccaaggt
GGAAGCTGTGTACACGGGTGCACAGGACTCGGAGGCGGCCCTGGCGATGA
AACGCTGCGACCCGCGCGGCCCGCTGATGTTGCACGTGGTCAAGCTGTAC
TCCGCCCCCGACGGGGAGAGCTTCCAGTCCTTCGGGAGGGTCTACAGCGG
GACCATCACTGCAGGGCAGCAGGTGCGGGTCCTGGGGGAGGCATACActt
tggaggacgaggaggacatggcggtGCGGGAAGTGAAGAGTCTGAGCATA
GGGCAGGGCAGGTACAGGCTGGAGGTGAGCACGGCGCGCCCGGGCAATTG
GGTCCtgctggagggggtggatggGCCCATCAGCAAGACGGCGACCCTGA
TCGAGGCCAAAGGGAACGACGAGGCAGCCATTTTCAAGCCCCTTAAGTTC
GATGTGGCGCCCGTTTTAAAGCTAGCGGTGGAGCCGTTGAACCCCGCGGA
GCTTCCcaagatggtggaggccctgcgGAAGATACGGAAAAGCTACCCGG
CGGCGCAAACGAAAGTGGAAGAATCCGGTGAGCACGTGATCTTGGGCACG
GGGGAACTGTATTTGGACTGCATCATGCACGACCTCCGGCATCTGCACGC
GAGCCTGGAGGTAAAGGTGGCGGACCCGGTCGTCTCGTTCTGCGAGACGG
TGCGTGAGACCTCGTCCTTGCGCTGTTTCGCCGAGACGCCCAACAAGCAG
AACCAGCTGCACATGATCGCCGAGCCTCTGGAAGCGGGCATCGCGCGCGA
CATCGAAGAAGGGGCGGTGTCGACGGACTGGGACAGGCGGGCGGTCGGGG
ACTTCTTCCACGCCAAGTACGGATGGGATCTCTTGACCGCCCGCAACATT
TGGGCATTCGGGCCGGACGCGCAAGGGGCCAACGTCCTGATCAATGACAC
CATGCCGTCCGAGGTGGACCAACGGCTCTTGGACAACGTCAAGGACTCCA
TCGTCCAAGGTTTTCAGTGGGGGTGTCGCGAAGGCCCTCTTTGCGACGAG
CCCATTCGGAACGTGAAGTTCAAAATTTTGGACGCAACGATTGCTCCCGA
GCCCGTCCACCGCGGAGGGGGTCAGGTTATTCCCACGGCTCGCCGCGTCG
CCTACTCGGCCTTCTTGCTGGCCACGCCCCAGTTAATGGAGCCCTATTTC
AAGGTGGAAGTGCAGTGCCCGGCGGACTGTGTTGATGCCATCCATCTTGT
CCTCCAACGGCGCCGAGGTCACGTGAAAGAAGACCGTCCGAAGCCAGGAA
CCCCTTTCTATACAGTCgaagcctttctccccgcgATCGACTCGTTTGGC
TTTGAGACTGATCTGCGCGCGTACACGCAGGGGCAGGCCTTCTGCTCCCA
GGTCTTTGACCATTGGAAAGAGGTGCCCGGAGATCCCTTGGACAGGGAGG
TAGTCTTGCACCCACTCGAGCCTGCGCCGATCAATTCTTTGGCCCGTGAT
TTCATGGTCAAGACAAGGCGACGTAAGGGGTTGAGTGAAGACGTGATGAT
AAGCAAATATTTCGATGCAGAGCTCCTGCAGAGTCTTGCGAACCAacagg
cggaggcggcggctttgGAGATGGGTGGGGCTGGATTTGGAGGCTACTAC
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