rna2570, rna2570 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2570
Unique Name	rna2570
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2661
Alignment location	CM002459.1:689855..691652 +

Link to JBrowse

Properties


Property Name	Value
Product	dna polymerase i
Orig transcript id	gnl\|cribi\|Naga_100036g13.2537.mrna
Orig protein id	gnl\|cribi\|Naga_100036g13.2537
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:689855..691652 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g13	gene2457	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2570	rna2570-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28117.1	cds2562	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:689855..691652+
coding sequence from alignment at CM002459.1:689855..691652+

mRNA sequence

>rna2570 ID=rna2570|Name=rna2570|organism=Nannochloropsis gaditana|type=mRNA|length=2661bp
ATTGACACCGTTTCGGATCATTTCGTCTCTTGCCAAACGCTACGCGCCGC
ATGGTATGCCACAGGTGCTTTCACAATGTCGGACACGCTGCCCTTACGTG
TTCGTGGACCAGCTGGTGGGTCCCCCGTCCTTCTTTCCAACCTGACTCGC
GCGTCCTCCATCTCCGACCTCATGAAAGCCGTTCGCAATTTACTTATGCT
TCATGAGTCAAAATCCTACATTCTGATGTCTGGCTTTCCTCCCAAAACAC
TGTTTGGTGACAATCATGACCGGCCATTGGGTGTTTTGCTGCAACCAAAC
GAGGTAGTCACAGTTAAAGAGGATGGAGGCGAGGAGCCTCGAGTGCTGCA
AGGTCATGGTCTGATGAAACAAAAGAGAGGGGTAAAGGCAAAGGGCGCAA
GTGGTCCGGCGAAGAAAGAAAATTCTCGACGTACAGATAAAAATACAGTG
AGCAAGGCTGCTCTTGTTGTGAACGCGGGACCGAGGATTCGCACACTGCA
CCGTCAGAGTGGAAATGGAACGGGCGGTCCTGGAACTGGCGGTGAAAACG
CAACTCGCAAACGTCGACGCATGAACGTGGGCGTATCAAACGAGGAAGAT
TTGGGGGAGTTGTTGCTTGCTTCTGTTGGGAAAGGGGGTGGGGGCGGAAG
GGTTGGACGATGTATGCGCGCAGTGTTTCGGAAAGCTGTTGAGAAGAACT
TCGATGAGGCGAAGGCCGCGGCTCGCGTGGCAGCCGTTCAAGGAGGGCGG
TACTCAGCAAAAGCAAGCATAGAAGAGCGGCGGTTGGATGGGTCGTGCGC
ACGCCTGCACGTACTCTACCACAAAGGCCACGGCTTTCAAAGCGACTATC
GAGATGACGTTGAGCTCCTTTCTCAATCGCAGCTTCTGGGGGTGGTTCGC
TCGGTCCTGGCCGACGTGGACGGACGAGAGATGCTGAAGCCGGCCAACAT
GGCTGGTTGCAGTCCTCGGGTCTTCTGGTCCCTCATGCATCACTTTAACG
CCAACAGCATCGAGGGAGGAGGCCAGGAGGGGCTCGATAAGGGGACGGAG
GCCGCATTGCGATGGCTGGTTCCAGAGCAAGATTGGGCCTTTTTACACGA
GAGACACCGAAAATTGAGCGACAAAGCGAAAGAAAATCAGGCGCAGGAAG
AGGAGCTCCAACGGGAGCGAGAGGAAGAGGCGCGTAGGAAGAGGATGTGG
CGGGAGGCTCGGGGGGCGGGGAGGCAGCGAGTGGTTGCTGCGGACGCACA
CTCGAAGGGAAAAGGCCGAAAAGACCCGGCGTCAGGGAGGACTACAAGCG
TGGGGGATACGATTGATCAAGCTGGAACGCCTTGTGAGGAGGCAGTTTCT
GAAGTCCTGGATCGTGAGAGGCGGGCACAAGCGGCCGTGGCTCGTTCGCA
CTCATTTCACGGAGCCCCCGCACAAATAGTGGAGGCGGCCAGAAAGGCCG
AGGGGAGGGAGGGAGGACGTAAAGAGATGGAGGAAAGAGCGTCGTTGGTA
GCTGTGGATGGGGAGAGCGGGGAGATTGACAGCGACTTCCCGGAGGAGGT
CTCGGACGCGTGGGTGAGGGTCCTGAGGAGCCCTTCCTTCATGCTCTTGG
ACTGCGCGGCCTTGGCGGGAGCGGATGCGGAGGAGCTCGTCTTGCGCCTA
CAGAAGCACCATGCCGCGGGTGCAAAACCCCTGGCACCGTCTGACCCCAG
TCTGTCTGAAGTTCAGGGATGGGTCTCGGCGTGCCAGAACGACGAGCTGG
ACGAGATGATGATGCGACTGGCGGGCGGGGACGAGGACCTGCTGGAGGCT
ATGGAATGCGTGCATGTGGCGACTCCCAAGGATGTGAGGCTCTGGGGAAT
GGTGCCTGGGGCTTTCTTGGATATGCTGGCTCGAGAGCTCTCCGAAGAGA
AAATGGCGCATGTGCAGGCAAAACTTCCGGACGTGGAGGCTGTGCAAGTT
TTGAAAGAGAGGGCTGAAAAGCTTATGGCGGAGAATGCCTGGTTGGAGTC
CTGGGGCAGCGAGTGAGCAGTAAGGAAATTTGAAGGAAAGAGACCTGGAA
GGGGTTGGGAGGGTTGCGTGTGGTTAAGTGGGTATTTTCGGGGCCGATAG
CTGGTCACGGGGTTCAGAATGCTTTGAAGGATAAAGCAACTTGCTGTGTG
CATAGAAATAGACCCTACTGAGAATCAAATTAAAGAGACCGTAAAAATCT
TGCGATAGACTCAGTATTTAATACGAATTTCTTTTTCCTGCCGATACGGC
ACTTACTTTGTAGGTGCAGAAAATCCATTAAGGACCGGTTGCCTCATGGT
CGTGGAATTTTCGTGCAACACTTGCTAAAAAGGTCAGAGGCGTGGAGCAG
GAGGCACGTCCAACCAATGAGAAGCTACTAGGGGTCCTACCTTAAGAATG
CTATATACGGCCATATACATGCTAATTGCCCTGGCCAAAGCCATCTTTCA
TACCCAAAAATGTATTTATGCATGCCAAAACCCCATGAAGCCGAGACTCC
ACAGCATATCCACGATCGGCGTCACTGTGTACAGTTTACGTTTCCCGTCC
GGTCTCACTCACTTCCTTTCGCAAGAAATAAATTTGAAAAATGGGACGCA
TAAATGCTGGTGCTTTTTTAAAGTGGCGACATTGATCACGTCATGTTTTT
GCCTCGTCCAA

protein sequence of rna2570

>rna2570-protein ID=rna2570-protein|Name=rna2570|organism=Nannochloropsis gaditana|type=polypeptide|length=423bp
MLQIGRQRTEKRRVFNAYLLHRPKRLLFLVGVVCLALGWNQTTAVSMASR
TAFLFRHLSLLPTSSSAALPPHLPWGALPTITPFSSSSSKSTQMSPRTPN
MPVPTENCFFILDATSFLYRSYYSKYQLNDYEETDRPLLLLGKEFAQIMT
QHNPAYVAAAFDGPRDQVFRRDLFPAYKRNREAQPPELLALVPRAMAYLE
ALGCRGVFRSTRHEGDDLMGSLSHMAKAVAPDVTVVLVTEDKDMFCLVDD
RTLVMHPRTLEVFDAARVEAKLGVPPSLVGDLLSLAGDPVDGIPGVKGVG
PQTAVRLLRAFGSLDNLYANLEDVAALPNLRGAKTLAAKLTQQKEDVRVY
RSVVALACDVALQLPRAPDPRWTGTSPLEGLRYGGVDEIEGESLLLEAMG
APGIGRGPFLQLLRHQRQRSVPF

mRNA from alignment at CM002459.1:689855..691652+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2570 ID=rna2570|Name=rna2570|organism=Nannochloropsis gaditana|type=mRNA|length=1798bp|location=Sequence derived from alignment at CM002459.1:689855..691652+ (Nannochloropsis gaditana)
GTGTCCGACATTGTGAAAGCACCTGTGGCATACCATGCGGCGCGTAGCGT
TTGGCAAGAGACGAAATGATCCGAAACGGTGTCAATGGGGTGTTTCCACT
GCGTTCCCGTCTAACTTCTCAGACTCCCTCGCGGGTGCATCCCCTCGCTG
TTTCGCTGCCCGACACTCTTACACGTTGTACGAGCCCATTTACTGGTCAG
GGGGCCATTTGCACAGAAGAATCGTCCAGATTCTACCACATGTATGTCGA
GTGCTCCAGTGAAGAGCCGTCTTGACCTTTCCTCAGCTTCAAACCCAGCA
CCTTCCGCTCTCGTATCACGGGCAACCGCGGGAGGTACGCTCTGTCCATG
TGACCACATGCTGTTGAACACGAGAGGGCACCTGACCATTCAATCACCGC
TACAATTAGGTTTTTTAAATCTCCAAGTAGCCGCTCGAGGCGTTGTATGC
TTCAGATAGGTCGTCAACGGACTGAAAAGAGGCGAGTCTTCAATgcttac
ctcctccaccgtcccaaacgtctcctctttctggTGGGTGTAGTATGCTT
GGCACTTGGGTGGAATCAAACGACAGCAGTATCCATGGCTTCCCGAACTG
CATTTCTTTTCCGACATTTGTCGCTGCTTCCAACTTCTTCATCAGCGGCA
TTGCCTCCCCACTTGCCTTGGGGGGCTCTACCAACCATTACCCCCTTCAG
CTCTTCATCCTCAAAGTCTACGCAAATGTCTCCGCGAACTCCAAACATGC
CTGTTCCTACAGAGAATTGTTTCTTTATACTAGATGCAACAAGCTTTTTG
TATCGCTCGTATTACTCCAAATACCAACTGAATGACTACGAGGAGACTga
tcgccccctccttcttcttggcaaGGAGTTCGCCCAGATCATGACACAAC
ATAACCCGGCCTACGTCGCCGCTGCGTTCGACGGTCCTCGTGACCAGGTT
TTCCGGCGGGATCTTTTTCCTGCTTACAAGCGAAATCGGGAGGCGCAACC
ACCGGAGCTTCTGGCCTTAGTACCTCGAGCCATGGCGTACCTGGAAGCTC
TGGGCTGTCGAGGGGTGTTCCGGTCTACTCGTCACGAGGGAGACGACTTG
ATGGGCTCTCTCTCCCACATGGCGAAGGCCGTGGCCCCCGACGTCACGGT
GGTGTTGGTCACCGAGGACAAGGATATGTTCTGCCTGGTGGATGACCGCA
CCCTGGTCATGCACCCGCGGACCCTCGAGGTCTTCGACGCCGCCCGCGTG
GAGGCAAAGCTAGGAGTACCACCCTCTCTCGTCGGCGACCTGCTCTCCCT
GGCAGGGGACCCCGTGGATGGCATCCCGGGCGTGAAGGGCGTGGGTCCAC
AGACTGCAGTCAGGCTGCTGAGGGCCTTCGGCTCCTTGGACAACCTGTAC
GCCAacctggaggacgtggccgcTCTGCCCAACCTCCGCGGCGCCAAGAC
TCTGGCAGCAAAGCTGACTCAgcaaaaggaggacgtgcgggTCTACCGCT
CCGTGGTGGCCTTGGCCTGTGACGTGGCACTACAGCTTCCGCGAGCGCCG
GACCCACGCTGGACGGGGACGTCGCCTCTGGAGGGTCTCCGGTACGGGGG
CGTCGATGAGATAGAGGGGGAGAGTCTGCTCTTGGAAGCCATGGGGGCGC
CCGGGATTGGCCGAGGACCTTTCCTGCAGCTGCTCCGACACCAACGGCAA
CGCTCTGTGCCGTTTTAGAAAAGCGTGATGCGTACAGCAAAGAACTATGT
AAAATATATCGAAATGAAACAGCTTAAAGTAGCGGTCATTCGTCCTCG

Coding sequence (CDS) from alignment at CM002459.1:689855..691652+

>rna2570 ID=rna2570|Name=rna2570|organism=Nannochloropsis gaditana|type=CDS|length=1272bp|location=Sequence derived from alignment at CM002459.1:689855..691652+ (Nannochloropsis gaditana)
ATGCTTCAGATAGGTCGTCAACGGACTGAAAAGAGGCGAGTCTTCAATgc
ttacctcctccaccgtcccaaacgtctcctctttctggTGGGTGTAGTAT
GCTTGGCACTTGGGTGGAATCAAACGACAGCAGTATCCATGGCTTCCCGA
ACTGCATTTCTTTTCCGACATTTGTCGCTGCTTCCAACTTCTTCATCAGC
GGCATTGCCTCCCCACTTGCCTTGGGGGGCTCTACCAACCATTACCCCCT
TCAGCTCTTCATCCTCAAAGTCTACGCAAATGTCTCCGCGAACTCCAAAC
ATGCCTGTTCCTACAGAGAATTGTTTCTTTATACTAGATGCAACAAGCTT
TTTGTATCGCTCGTATTACTCCAAATACCAACTGAATGACTACGAGGAGA
CTgatcgccccctccttcttcttggcaaGGAGTTCGCCCAGATCATGACA
CAACATAACCCGGCCTACGTCGCCGCTGCGTTCGACGGTCCTCGTGACCA
GGTTTTCCGGCGGGATCTTTTTCCTGCTTACAAGCGAAATCGGGAGGCGC
AACCACCGGAGCTTCTGGCCTTAGTACCTCGAGCCATGGCGTACCTGGAA
GCTCTGGGCTGTCGAGGGGTGTTCCGGTCTACTCGTCACGAGGGAGACGA
CTTGATGGGCTCTCTCTCCCACATGGCGAAGGCCGTGGCCCCCGACGTCA
CGGTGGTGTTGGTCACCGAGGACAAGGATATGTTCTGCCTGGTGGATGAC
CGCACCCTGGTCATGCACCCGCGGACCCTCGAGGTCTTCGACGCCGCCCG
CGTGGAGGCAAAGCTAGGAGTACCACCCTCTCTCGTCGGCGACCTGCTCT
CCCTGGCAGGGGACCCCGTGGATGGCATCCCGGGCGTGAAGGGCGTGGGT
CCACAGACTGCAGTCAGGCTGCTGAGGGCCTTCGGCTCCTTGGACAACCT
GTACGCCAacctggaggacgtggccgcTCTGCCCAACCTCCGCGGCGCCA
AGACTCTGGCAGCAAAGCTGACTCAgcaaaaggaggacgtgcgggTCTAC
CGCTCCGTGGTGGCCTTGGCCTGTGACGTGGCACTACAGCTTCCGCGAGC
GCCGGACCCACGCTGGACGGGGACGTCGCCTCTGGAGGGTCTCCGGTACG
GGGGCGTCGATGAGATAGAGGGGGAGAGTCTGCTCTTGGAAGCCATGGGG
GCGCCCGGGATTGGCCGAGGACCTTTCCTGCAGCTGCTCCGACACCAACG
GCAACGCTCTGTGCCGTTTTAG

Synonyms

Publications