rna257, rna257 (mRNA) Nannochloropsis gaditana

Overview
Namerna257
Unique Namerna257
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2462
Alignment locationCM002455.1:649660..651735 +

Link to JBrowse

Properties
Property NameValue
Productphosphatidylinositol-4-phosphate 5-kinase its3
Orig transcript idgnl|cribi|Naga_100026g59.10650.mrna
Orig protein idgnl|cribi|Naga_100026g59.10650
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:649660..651735 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100026g59gene246Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna257rna257-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30396.1cds257Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna257 ID=rna257|Name=rna257|organism=Nannochloropsis gaditana|type=mRNA|length=2462bp
ACGGGTTGTCTTAGGCCTCGTTGAACCGACCTCCCCACTCTCCCCTCCTA
CTACTCGGGCCCGTCCAGGGTCAGTGCACAGCCACAGAGGGGCCCTCGTC
CAGAGACAGGATTATGGTCAACGAGAATCCTTTAATCCTGAAGAGACACC
TGGAGGACGAGGAGGGGGCGATGTTGCTTCAAAAGGAACGTGCTACATCC
TCCGTTCGACCGGAGGCCATGGCCACGTTCATTTTTGGCGGCCAGGAGGC
TCTTTCCCGTCGCCTTCGGGCGCTGGCTTTCATCGAAAAAGATCCCGTCT
TCGACACAAAGGACCGAAAGCACCTTGACCAAAAAAGTCGCTACGTGCGG
TCGTCCGAAAAGGCTGTGCACTTAGTCTTGAAATGTCGTCGCCTGGGAAT
TCCCTTCACCCAGATGCTCGACATTCTAAATGTAGCTTTGGACGAGATAA
CTCCCACAGATGTCCATACCAAAATGGCAATTCCATCTTTGATGCATCAA
ACAACACCTGAACAACGTGCGAAGTGGCTCCCGCTGGCAGAAAACTTCCG
CATCATCTGCGCGTACGCCCAGACCGAGCTCGGCCACGGCTCCAATGTGC
GGGCCCTTGAAACGATCGCGACGTATGAACCATCGTCGCAGTCCTTCATC
TTGCATTCTCCTCGACTGGAGTCGGCGAAGTGGTGGCCGGGAGGTCTGGG
GAAAAGCGCCACGCACGCCATCGTCTTGGCCCGCTTGCTTCTGGGCGGAA
AAGACAAAGGATTGCATTCCTTCATCGTTCAGCTTCGAGACCTGCGGGAC
CATACACCACTGCCTGGCGTCACACTGGGAGATATCGGGCCCAAGTTGGG
ATTCATGAGCGTGGACAACGGCTTCTGCCTCTTCGATCACGTCCGGATCC
CCCGAGAACACATGCTTATGGGCCTGGCGGAAATTTCGCCGGACGGGCAC
TACCGGAAGCGCAAGGGGGCGAATGGCGGGGAGAAGATCCTTTATGGAGC
CATGTTGGATGTACGGGCGGGATTGGTGGAGAGAGGAGGGGCAACATTGG
CCCGCGCCCTGACCGTGGCGATCCGGTACAGTGCGGTGCGGAGGCAGGGG
TATGCCCCTTCCCCCCCGGGCAAGCTTAGCCAATCGGCACCGCTGGAGCT
CCAGGTCCTTGACTACCCGACACAACAACACGCGCTGATGCCCCTCCTCG
CGTGGTCCTTCGCGCTTCAGATTACGGGGCAGTTCATGCGGCGGCGCTAC
AAGGCCTACCTGAGAGAGCTTGACCTCTCCTTACTCCCCGAGGTCCACGC
CCTTTCGAGCGGCCTCAAGGCGCTGACGGGCGAGGTGGTGAGTCAGGGCG
TGGACGTATGCCGGCGCATGTGCGGGGGCCACGGCTACCTGCTCGCCTCG
GGGCTTCCGGAGGTGTTCTCAAACTACACGGCCGTGCAGACCTTCGAAGG
CACCGCCCAGGTACTCGAACCTCAGCTGGCACGTTTCATCTTGCGCTTGA
GCATGGCGCCGACGGAGCGGCCCAAGGCTTCCGGGAGGGGGGCAGCAACC
GCGGCCAAGGCCCCTTTCGCCCTCTCCTCGGACTTCGACTACGTCCCCCT
GGCAGCAGGCAAGACATTCGTGCGATGCCGGGCCGCGACGCCGGTGGCCT
TTCTCGATCCTGCCTTTCAGATCGAAGCATACGAGGCGCGGGTCTCCGCT
CTTCTTTTGCTGGCAAGGGAGGAAGTCGAAGCTGACTTGCGGGGCGGAGA
AGGTGGCTTGGCCGCGTCGATGATGAAGAACGGGGTGCTGTTCGGACGTC
TGTCAAGGGCCCACTGCCAGCTGGTTCTCCTGAGACGCTTCCACGAGGCG
GTCGCCCGCGAGGAAGGGCGGATGACGATGACGACAGCCAGAAACGGGGG
AGTCGACGGGGAAGGGAATGGCGGGCGTATCGACCTGGGCGCGGCCGATG
GGAGCGAGGAGGGCGAGTCGGAGGACAGGGAGGAGACCGTCACGGTGGGG
CCCGCGGAGGTTCGGGTCTTACGCAACCTCTGCCATTTGTTCGCGCTTTC
GGGGATGGAGCGAGACATGGCCGAGTTCCGGGCGCGGGACTACTTGTCGT
CCGGACAAGCAGAGATGGTGAGCAGGGAGGTGCTGCGCCTGAACCGCACC
GTACGCGCGGAGGCCGTGAGTTTGGTCGACGCCTGGCTGCTTTCCGATAA
GCTTCTGGGCTCGGCGCTGGGACGTGCCGACGGACGGGTGTACGGAGCTC
TCTTTGAAGAGGCTTTGCGGTCGCCCTTGAACGACAAGGAGGTCAGCGAG
GCCTACACTCTGCACTGGAGGAGGCTTCTGATGGCAGGGGACTGCGCATG
GGAAAACGCGCGACTGTAGAGCAAGTGAGGAAGGTGGTCGCGAGGGGGAA
GAAAAAATAATGAAAGACTTTGACTAGAATGGTATTTCAAGCTTCAATTC
ATTCCTTTCGAG
back to top

protein sequence of rna257

>rna257-protein ID=rna257-protein|Name=rna257|organism=Nannochloropsis gaditana|type=polypeptide|length=341bp
MSDEELRALTAILADYQRHMADNPHSLLVHYCGHYHVRLYRERADEWDDV
HFLVMRNLMTPPQAGLSVQELYDVKGSTVGRAASQKERAKASAILKDLDL
MERAWPIDFGDQREAFLGQMASDVEFLRAKGVMDYSLLLGVCPAPSAAAV
RGLSSVSKTGAPSGQGFPQRMLSYFLGPPPSQGHGKEGLLGNQRAAAGGR
GGVESQGGWVVVHPQGREVYVVGVIDVLQLYNRRKQAETLLKSVLYKRTA
ISAVDPGTYAARFSHFVEGIVHQHFQHQQQHYHHQQQQFQQQQEQEQQAR
HRPHLQQEPGQPSAHDGRGYQEFAPAGPPPQSQPPTSYRGS
back to top

mRNA from alignment at CM002455.1:649660..651735+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna257 ID=rna257|Name=rna257|organism=Nannochloropsis gaditana|type=mRNA|length=2076bp|location=Sequence derived from alignment at CM002455.1:649660..651735+ (Nannochloropsis gaditana)
GTCTCTGTGCCACTAGGGGTTTGTCGGCCTCACGCACCATACTCTCAATA
CAATGACATAGGCCTGTCTAGCAAGTTGCCTTGTTTCCCGAGCGCGGGAA
GACTTTGAATCATCTTACCGCCCATTCCGCAACGATCGACGCTGCGTCCT
CTTTCAAGGCACCAGTATGACCAGAGGAGACAATTTGGTGGCCTTGCCTT
TCATGGCGCTTATCTTGGCTGCTTTCGCTAGACACAATAGTCTACCGTTT
CAGCGGGGCGGGCTTTTGCAGGCGCCAGGCGAATCCCAATACCAGGGGCA
GCAGACACCTTCACTGCCACTTCTTCAAGCTGAAGGACTGATGCCCTCCC
AAATGCACTCTGACTCCATGGTGCGAGAGGGAGACACATACCATTTACCA
TTGGCAGCTCTCCGGCATGGCCTCAGTGACGCTCTGGCTTGGAATGAAGT
GAGTGCTTTCAGAGCAAAAAGCGATTTCCATGTGCTTATGTTGGATgccc
ttgtcttccacacTGTCTCCATCTCCTAACTTTCTTTCAAAGGCCAAGCA
ACTGTGGCAAAGTTTGTTTTATGTATCTCATCCATGGACTTCGGGGGTCG
CTTAGCTTGGGCCACGGCGGCTTAATCCTCATGTTACTTCCCTTTCATGC
CCCGCTTTCCGCTTTAACGAGCAGGCCCTAGCCAAGGGGGCCCCTGTGCC
CGGCACACGGCCCCCACCCGAGTCACTGACCAGAGCCAAggtttcctttt
ttttcggAGAGAGCAATGGCACGACCTTTGCCGCCCTTCGAGACTTGTAC
GGGCTGAGCCAAGCGGAGTACCTGGCATCCTTGGAATCGGGCTTTGAGAT
CTTCGCTTCGAACAGCAAGTCCCGGCAGTTTTTTTGCTTCACGGGAGACA
AGAAGTTCATCATAAAAACAATGAGCGACGAGGAGCTCCGGGCGCTGACA
GCAATCTTGGCTGACTATCAGCGCCACATGGCCGACAACCCTCACTCCTT
GCTCGTTCACTACTGCGGGCACTACCACGTCCGCCTCTACAGGGAGCGGG
CAGACGAGTGGGACGACGTCCATTTCCTGGTCATGCGGAACCTCATGACT
CCGCCGCAAGCCGGCTTGAGCGTCCAGGAGCTCTACGATGTCAAGGGCTC
CACGGTGGGACGGGCGGCCTCTCAGAAGGAGCGGGCGAAAGCCTCCGCCA
TCCTGAAAGACCTGGACCTGATGGAACGTGCTTGGCCCATAGACTTTGGT
GATCAGCGGGAAGCATTTTTGGGGCAAATGGCATCGGACGTGGAGTTTTT
GCGCGCGAAAGGGGTGATGGACTACAGCCTGCTTCTAGGCGTCTGCCCGG
CCccgtcggcggcggctgtgcgGGGCCTGAGCTCTGTGAGCAAGACTGGC
GCGCCTAGCGGTCAGGGTTTCCCCCAACGGATGCTGTCTTATTTCTtggg
gccgccgccttcacaggggcatgggaaagagggcctcCTGGGCAATCAGC
GCGCGGCGGCGGGTGGCCGAGGCGGGGTCGAGTCGCAGGGAGGATGGGTG
GTGGTGCACCCCCAGGGCCGGGAGGTGTATGTGGTCGGGGTTATCGACGT
ACTGCAGCTCTACAACCGGCGCAAGCAGGCGGAGACCCTCTTGAAATCGG
TTCTTTATAAGCGAACGGCCATTTCTGCCGTCGACCCCGGCACATACGCA
GCCCGTTTCTCCCACTTCGTCGAGGGCATTGTGCACCAACACTTTCAGCA
CCAACAACAACACTATCACCACCAACAACAGCAATTCCAACAACAGCAAG
AACAAGAACAACAAGCGAGACATCGGCCACACCTACAGCAGGAACCGGGG
CAGCCTAGCGCGCACGACGGGCGAGGATACCAGGAGTTCGCGCCTGCAGG
TCCCCCGCCCCAATCTCAGCCACCCACTTCGTACAGGGGCTCATGACGGA
TTCGCCCTTAAAAAAACCGACCGAGTTAAGTTAAGGATATGTGTACAGGT
GATGGATGGGCTTGCTGAAAAAACGTGTATATCTGTAACATGGAATAAAG
CGACACTGACCGCGATCGGCGCGGGC
back to top

Coding sequence (CDS) from alignment at CM002455.1:649660..651735+

>rna257 ID=rna257|Name=rna257|organism=Nannochloropsis gaditana|type=CDS|length=1026bp|location=Sequence derived from alignment at CM002455.1:649660..651735+ (Nannochloropsis gaditana)
ATGAGCGACGAGGAGCTCCGGGCGCTGACAGCAATCTTGGCTGACTATCA
GCGCCACATGGCCGACAACCCTCACTCCTTGCTCGTTCACTACTGCGGGC
ACTACCACGTCCGCCTCTACAGGGAGCGGGCAGACGAGTGGGACGACGTC
CATTTCCTGGTCATGCGGAACCTCATGACTCCGCCGCAAGCCGGCTTGAG
CGTCCAGGAGCTCTACGATGTCAAGGGCTCCACGGTGGGACGGGCGGCCT
CTCAGAAGGAGCGGGCGAAAGCCTCCGCCATCCTGAAAGACCTGGACCTG
ATGGAACGTGCTTGGCCCATAGACTTTGGTGATCAGCGGGAAGCATTTTT
GGGGCAAATGGCATCGGACGTGGAGTTTTTGCGCGCGAAAGGGGTGATGG
ACTACAGCCTGCTTCTAGGCGTCTGCCCGGCCccgtcggcggcggctgtg
cgGGGCCTGAGCTCTGTGAGCAAGACTGGCGCGCCTAGCGGTCAGGGTTT
CCCCCAACGGATGCTGTCTTATTTCTtggggccgccgccttcacaggggc
atgggaaagagggcctcCTGGGCAATCAGCGCGCGGCGGCGGGTGGCCGA
GGCGGGGTCGAGTCGCAGGGAGGATGGGTGGTGGTGCACCCCCAGGGCCG
GGAGGTGTATGTGGTCGGGGTTATCGACGTACTGCAGCTCTACAACCGGC
GCAAGCAGGCGGAGACCCTCTTGAAATCGGTTCTTTATAAGCGAACGGCC
ATTTCTGCCGTCGACCCCGGCACATACGCAGCCCGTTTCTCCCACTTCGT
CGAGGGCATTGTGCACCAACACTTTCAGCACCAACAACAACACTATCACC
ACCAACAACAGCAATTCCAACAACAGCAAGAACAAGAACAACAAGCGAGA
CATCGGCCACACCTACAGCAGGAACCGGGGCAGCCTAGCGCGCACGACGG
GCGAGGATACCAGGAGTTCGCGCCTGCAGGTCCCCCGCCCCAATCTCAGC
CACCCACTTCGTACAGGGGCTCATGA
back to top
Synonyms
Publications