rna2568, rna2568 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2568
Unique Name	rna2568
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2667
Alignment location	CM002459.1:685878..687736 +

Link to JBrowse

Properties


Property Name	Value
Product	Leucine-rich repeat, ribonuclease inhibitor subtype
Orig transcript id	gnl\|cribi\|Naga_100036g15.2549.mrna
Orig protein id	gnl\|cribi\|Naga_100036g15.2549
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:685878..687736 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g15	gene2455	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2568	rna2568-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28129.1	cds2560	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:685878..687736+
coding sequence from alignment at CM002459.1:685878..687736+

mRNA sequence

>rna2568 ID=rna2568|Name=rna2568|organism=Nannochloropsis gaditana|type=mRNA|length=2667bp
CAAACACGAACATATACTCCGAATACGACCACAGGCACATTATAAGACTT
TTGCGTGATTCAACGTGCCGCATTCCCACTTCCGTCTATACTTTCAAGAC
AAATGGAATCAGATCAGAGGTCCCAGAAAGGAACCAATGTCGGCTTACAT
GACGAGATTGCGTACGAGAGCATAGACTCGCACGCATCACCGAGTCGTTT
AGGCAGCATGGACAGACTTGGTTCCTCCCGTTTGGTTACTGTGGGGCTGG
CATATGAGGTTTGCCGGGACCGAGGCGTGGTGACGGGTATCAAAGATGCA
GCTACCGTTGAGGATGGAACGGGGTGCCCCGCACAAGGCGAGCGTGGACC
TAGCGTCGACCGTGCAGGCACCAAAAGTGGGTCCTCTAATCACCTGCGGC
TGCCGGCTTTGGAGACTGCCTTCTCCACCAAAACCCAGACGAAGCTCAGA
GTGTCGCGAGGCAAGTCCTACGAGGGGGAGCACTTTTCGCTTAGCTGGAC
GATTACACTGCAGGTACCCATTAAAAATCCCGCTGTTGGGGAGTCTACGG
ATAAAGGGCTATGGAGCTTGCTCCGCAAAGGAAGAAGCAAGGCGAGCTCG
GATCCTCCCCGTAGGACGAAGAAGACTATCTTGGACGGTCTTGTGGGGAG
GGCGGAGAAAGGGCAATTGATGGCCGTGATGGGGTCCTCGGGTTGTGGGA
AGACATCCTTCTTAAATTGCATTTCCATGCGGAACCAAAGTTTTGTGGGT
AACATCTTCGTGAACGAGAAGGAGATCGACGGGCGCTACTTCAGCCTCGC
GGGCTTTGTGCACCAGGACGACCTATTCCTCCCCACAGAGACCGTGCGCG
AGCATCTCACCTTCCATGCCTTGCTGCGGTGTGACCCCTGCGTCCGCAAA
GACCTGCGGCTGAAGCGCGTGGAGACTTTGATCAAGACCGTGAACCTTGA
GCACGTGTCCGACAGCCTCTTAGGCGGCCCGGGAAGCTTCATTCGAGGCC
TCTCCGGCGGCGAGCGTCGGCGCGTTTCCTTTGCTACGGAACTCCTTTCA
GACCCCGTCATCATCTTTGCCGACGAGTTCACGACGGGTTTGGATGCGTC
CATGGCCAAGAGCGTGTGCCTGGCCCTCCGAAAAGTGGCCGCCGGGGGCC
GCCTTGTCATCGGCACCATCCACCAGCCCTCGTCCGACGTCTTCGCGCTC
TTTACACACGTCATGCTCATGACGCAGGGTCGGGTTATCTACATGGGCCC
GCGCACCGCGCTTGCTGCCTACTTCGAGCGGCAAGGAGATCCGTCACTAC
TCTGCCCACCCCGGCACAACCCGGCGGACTTCTTCGTCACGCTCGTCGCC
CTCCATCCGCAAGACCCCGTCGGTAGCCAAAAAAGGATCGACAATCTAGT
GGCCATCTATCAGGCATCGCCCGAGCGCGTGGCCATGTCTGACTGGCAGC
AAGACGTGGCCTTCCCCGAGCTCTTGCTCTACCACCGGAGCTTTAAGATG
AGGCATTTTCAGGCCTCCAGCTACACGCAATTTCGCTTGTGCTTCCAACG
AAATGTTCGCGCTCTGTTCCGCGACCCCATGTCATTTGGGGCCGCATTGG
GCAGCGGATTTATCACAGGAATCATCCTCGGGTTGGCCTACGCCACTGCG
CCTAATGCCCCAGCTACGGCGGAGCATGTCCGAAACACGGAGGGTTTGTT
CTTTTTGGCCAATTTGCAAGTCTTCTTGATCATATTGTACGCAACTATCA
TGGCATTCTCAGCGGAAACCAAGGTCTTCATGCGGGAGAATCAGGCGGGG
GCGAACCGAGTCGGGGCGTACTACCTTTCCAAGACGTTCACGGGCTGGGC
GGTGGAGATAGCCATGCCCTTTGTCTTTGCACTTCTCGTCTGGGCACTGG
CAGGCCTGCAACGGTCACCGGAAGGATTTTTCATTTTCGCGGGCGTGATG
ATTTTGAACGCCCTGTGCTTCGGCTCTATAGGGTACTGCCTAGCCGCCAT
GACAAGTGATCCGCAAATCGCAATGGCCATCGCCCCCGTCTTGGTCCTAC
CCAATGTTGTTTTCTCCGGCATCATGTACGATTTGTCCCTCACCTACGGC
TTTCGGGAATTTCTTGCCTACATATCTATTCTTCGCTACGCACAAGCCGC
GATGCTCATCAACGAATTTCCTCCGTCGAGCACTCGCTTTACATCAGAGA
TTCCTAACCAGGAGGCAGTACTGGAAGGTTTGAATGCATTCCCCCTGAGC
ACTAACTTATGGGCATTAGCATCTGCCGCAGTGGTATTTCGGATCATAGC
CTACCTCATCCTCTTGCTCAGAACCACTCGAGAAAGGATTGTCGTGCGCT
AGCAAAGTGCAGGTGGAAAAGTACCGTAAATGGATGAACGCGAAATTCTG
CACTGATTCAATTTTGTTCGAACAGGTATCATGCAGCGACACTCAGATTG
TAACACCTAACACGAGTGAAATTAGGCGACCCTCCAGAAGTTTTTAGGCA
CGATGGAGGGAGCGAGAATGATTGCCTGTATCGCGACGAATCAGAAGAGG
ATTTCTCTGTTTCATCAGGGCTTTTCTGCTTTTTCCAAAGGAAAATTATA
ATATCAGCGCCATAAATTAAACGCATAAAATGTCAAAGAAATAAATGTCA
GCGCAGTAGCATGGGCC

protein sequence of rna2568

>rna2568-protein ID=rna2568-protein|Name=rna2568|organism=Nannochloropsis gaditana|type=polypeptide|length=345bp
MCKRVMTSRKRELDDVLSLCPTPGMASTFLPPSTSHAFAAAVMAPALIKA
VASVKSKHVTTPLSALGQDVLNVVAQYCHPIELARLGLCTRELLVGSEQS
AALLCRRYVAPAEADMVAYQAGHSNLGSCSGNSWCYRYLCAFEVAGVEAP
KLKTVLRDIYSQRHVMQVNIGSVTAKRALAGSTGAARGVLTPTATQHLNL
YGLRMGDGGAERLALALRVARAYRVLLLNLGGNDLSDRGAQAVIQAIKRH
HAEVDTLFLAQNQIGPEGARCVADLISSSPTLRSLSLSDNPLTDEGAVCI
TGALPESSSLATLSMRCASFSSQAREGLRSSWGGRGGDKVFGLYI

mRNA from alignment at CM002459.1:685878..687736+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2568 ID=rna2568|Name=rna2568|organism=Nannochloropsis gaditana|type=mRNA|length=1859bp|location=Sequence derived from alignment at CM002459.1:685878..687736+ (Nannochloropsis gaditana)
TGCTGTCGTTGCGTACATATTATAGCGGAATCTGCCAAATTTCGGAGGTG
GATGGACAACATTGCTTTGGGCGTGGGCGTCCGCACAGCCAACCCCCCAC
AGATGCAGCCGAGGGGCTCGCCCACTGGCTccaaggggaaaggggaattt
tccctcccgcacTGATGATATGGAATGTCCGCATGAGTTGATGGATTATG
CCACCCAACTAACAGGGAAACATGTGTAAACGGGTCATGACATCACGAAA
GCGGGAGTTGGACGATGTTTTGTCCCTGTGCCCAACACCCGGCATGGCCT
CCACTTTTCTTCCACCTTCAACTTCGCATGCCTTCGCTGCCGCAGTGATG
GCGCCCGCCCTAATCAAGGCCGTCGCATCCGTCAAAAGCAAACATGTAAC
AACGCCACTATCAGCATTGGGTCAAGATGTGCTGAATGTGGTGGCTCAGT
ATTGTCATCCCATTGAACTTGCCCGCCTCGGCTTGTGCACGCGCGAACTT
CTAGTTGGGAGCGAGCAGAGCGCCGCCCTTTTGTGTCGGCGCTATGTAGC
ACCTGCTGAAGCAGACATGGTCGCATATCAAGCTGGTCACAGTAATCTTG
GCTCATGTTCGGGCAATAGCTGGTGTTACCGTTACCTTTGCGCCTTCGAA
GTTGCGGGCGTTGAGGCGCCAAAGCTTAAGACGGTGCTCCGTGACATTTA
CAGTCAGCGGCATGTAATGCAGGTAAACATCGGCTCCGTGACGGCTAAAA
GAGCGCTGGCAGGTTCTACCGGGGCAGCGAGGGGCGTATTGACCCCCACC
GCAACACAGCACTTAAACCTGTACGGGTTGCGCatgggggacggaggagc
ggaaaggTTGGCGCTGGCGCTCCGGGTTGCACGGGCTTACCGAGTGCTGC
TTTTGAATCTAGGAGGGAATGATCTTAGCGATCGTGGGGCGCAAGCAGTC
ATCCAGGCGATCAAGCGCCATCACGCCGAGGTGGACACTTTGTTCCTTGC
CCAGAACCAGATCGGGCCTGAGGGCGCGCGGTGTGTCGCTGATCtgatct
cctccagccccacgCTCcggtctctctccctctctgacAACCCGCTCACG
GATGAGGGCGCCGTTTGCATCACCGGGGCGTTGCCAGAGAGCAGCAGCCT
TGCAACGCTTTCCATGCGATGTGCGAGTTTCTCCTCACAGGCCCGGGAGG
GCCTCCGTTCCTCTTGggggggacgcggcggcgaCAAAGTTTTTGGTCTC
TACATTTAGACAGAAAGCACGTCAAATTCGAAGGCGATTGCGGTTTTGGA
CTCTATGAATTTAAAGGCCTGTACGCCTGATGGGAACGTAGGGTGAGCGC
ACAAAGTGGACTCGACACCGCGTTGTCGAAAGTACCCAACTAGGCGAACT
GGTTGGACGAGGCAAAAACATGACGTGATCAATGTCGCCACTTTAAAAAA
GCACCAGCATTTATGCGTCCCATTTTTCAAATTTATTTCTTGCGAAAGGA
AGTGAGTGAGACCGGACGGGAAACGTAAACTGTACACAGTGACGCCGATC
GTGGATATGCTGTGGAGTCTCGGCTTCATGGGGTTTTGGCATGCATAAAT
ACATTTTTGGGTATGAAAGATGGCTTTGGCCAGGGCAATTAGCATGTATA
TGGCCGTATATAGCATTCTTAAGGTAGGACCCCTAGTAGCTTCTCATTGG
TTGGACgtgcctcctgctccacgcCTCTGACCTTTTTAGCAAGTGTTGCA
CGAAAATTCCACGACCATGAGGCAACCGGTCCTTAATGGATTTTCTGCAC
CTACAAAGTAAGTGCCGTATCggcaggaaaaagaaattCGTATTAAATAC
TGAGTCTAT

Coding sequence (CDS) from alignment at CM002459.1:685878..687736+

>rna2568 ID=rna2568|Name=rna2568|organism=Nannochloropsis gaditana|type=CDS|length=1038bp|location=Sequence derived from alignment at CM002459.1:685878..687736+ (Nannochloropsis gaditana)
ATGTGTAAACGGGTCATGACATCACGAAAGCGGGAGTTGGACGATGTTTT
GTCCCTGTGCCCAACACCCGGCATGGCCTCCACTTTTCTTCCACCTTCAA
CTTCGCATGCCTTCGCTGCCGCAGTGATGGCGCCCGCCCTAATCAAGGCC
GTCGCATCCGTCAAAAGCAAACATGTAACAACGCCACTATCAGCATTGGG
TCAAGATGTGCTGAATGTGGTGGCTCAGTATTGTCATCCCATTGAACTTG
CCCGCCTCGGCTTGTGCACGCGCGAACTTCTAGTTGGGAGCGAGCAGAGC
GCCGCCCTTTTGTGTCGGCGCTATGTAGCACCTGCTGAAGCAGACATGGT
CGCATATCAAGCTGGTCACAGTAATCTTGGCTCATGTTCGGGCAATAGCT
GGTGTTACCGTTACCTTTGCGCCTTCGAAGTTGCGGGCGTTGAGGCGCCA
AAGCTTAAGACGGTGCTCCGTGACATTTACAGTCAGCGGCATGTAATGCA
GGTAAACATCGGCTCCGTGACGGCTAAAAGAGCGCTGGCAGGTTCTACCG
GGGCAGCGAGGGGCGTATTGACCCCCACCGCAACACAGCACTTAAACCTG
TACGGGTTGCGCatgggggacggaggagcggaaaggTTGGCGCTGGCGCT
CCGGGTTGCACGGGCTTACCGAGTGCTGCTTTTGAATCTAGGAGGGAATG
ATCTTAGCGATCGTGGGGCGCAAGCAGTCATCCAGGCGATCAAGCGCCAT
CACGCCGAGGTGGACACTTTGTTCCTTGCCCAGAACCAGATCGGGCCTGA
GGGCGCGCGGTGTGTCGCTGATCtgatctcctccagccccacgCTCcggt
ctctctccctctctgacAACCCGCTCACGGATGAGGGCGCCGTTTGCATC
ACCGGGGCGTTGCCAGAGAGCAGCAGCCTTGCAACGCTTTCCATGCGATG
TGCGAGTTTCTCCTCACAGGCCCGGGAGGGCCTCCGTTCCTCTTGggggg
gacgcggcggcgaCAAAGTTTTTGGTCTCTACATTTAG

Synonyms

Publications