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Properties
Property Name | Value |
Product | abc subfamily abcg |
Orig transcript id | gnl|cribi|Naga_100036g16.2527.mrna |
Orig protein id | gnl|cribi|Naga_100036g16.2527 |
Gbkey | mRNA |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002459.1 | supercontig | CM002459.1:682747..685755 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2567 ID=rna2567|Name=rna2567|organism=Nannochloropsis gaditana|type=mRNA|length=2269bp ACCGTGAATTCTCTTGAGTGCTCGCGTGAAATAAGACATATAACGTCACT CGTCGGGTCGTTTCGCACAGTGCTTCCAGACGGCCTTGATTTTCAAGTGT GGCGTTGTGGGTTTAATTATTGCGGGCAACTCGCGTTCTCTTGCCGCCCG CCTCTGCCTCACAGCCGTCATCAGATCGGCCGCAGCCCGAAGCCTGTTTC ACCCGTCTACCTCTGAAGGCATGGATGCCCAAACAACGAAACTTTTATAG CCTTCACTTAACGTTACATTCATTTCTCATTGAATGCATAGACCGGAAGG CGCGCTTTAAATGCCTGTGCGCTTCATTCAGCGGCTGGTCAACAGCTCTT CGTCCTTGACAGAGACCAGCGGGCGGCATAGTTGCGGGCGTGCGACTCGC CACACTTCCCAGTCTGCCCCCAGTCGTCTATAGTAGCACTACATCCCATA TTCATGGCCATTTCTCCTTCTCGATGGCGTCGGGCAGCGGCTCTTTCATC GTCTCCGCGTGCCAGCCCCTCGTCCGAAGCCGAGTCGTCGTTGCTCTCCT TGATGGAGGAACAGGTCATGCTCAGCGCGTTCTGGGGCGACTGGCGCATA GCAGAGCACAAATTTCTATTTCAAAGTACAGGGAGGAGGCGGACAGACAA GATGCACGCCGTAACGGAATCAACCCCATCGCGTGGAGGAGGAGAGAACA GCTCCGAAATGCAGCAGCGACTTTTGGCCTACTGTGAAGTGGACGAGGCC CTTCCAGGCCGGGTCTCCCCCAAGCCCACCAGTCCGCAGAGAGGAAAGCG GGTGACAGAAATCGTCGAAAGCAAGAGGAAGAAAGAGGAAGACCTAGAAG CTTGGCTGCTATCCTCTATGCTGTTGCACGAGGAAGAGGGTCCCGAGGAC AGCAGTGAGAGGAATGGAATCCATTGGCATGGCCCGCGACAGCTCGAGGG CCAGCGGCAATCGTCCTCTCTCTCCCATCAGCAGTGTCACCCCATCACGG AGGATGGCCGGGACGCTAAGCAAGCCCAGGACGGCGGTGGCCAAGGGGAA GAGGACAAGGGAGAGGATGCAACGGAGTCGGCCGCTGCCGCGGCAGTAGC CAGGCTGAGGGCCTACGAAGGTCGCATCCAGGAGCTGGAGGCCAAACTGG TGGAGACCGAGGTTCTTCTCAGCTCCGACTCAGGCACCGTCATTTGCGGA CTGGAGCGGGATCTAGCACAAGCAAGGCTGGCCCTTGCCAATATGGAGGC CGAAAAAGACGACCTAGAGGTGCAGGTGTTGAACATGCGACAGACATCGA AGTAGAGCATAAAGTAGAAGCCAGCATTGACAGCTCGTTTGTCTGAAATA AAATGCATTGACGGGGTGTGAGGCGGTGAATTCTTTGAAGGGGGGGCGCG GTTACGGGAACGGGGAGGTTACTCGACTGTGTTATTTTGGCATACTTCAA AATTGTAACATCAATCACAAACGCTACGTGCATAGGAAAACTATTGCTTT CCTATTTTTTTCCCTTTGATAGTCAATTTTCCTCGGATGTTTTTGACACA GCTTCCTCATGATTTGCAAACAGAGATCGCTAACTTGGGAGGGGGGAAAA GAGAGGAGTCGCCCCCCCCTTGTCAGCAAGTTCCATTCCATTTCTCGTCG CTGTGTTTTAAATTAACATCCAAAGATGCCATCGCATGAAAGATTAAGAT TTTGTTACTGAGCTTATGCTTAGTGCTGTCGTGGTGTACAGAGGATCACG GCGGTCTGCCGTCGATAAAGTCGGTAAACCCCTTCTCTCTCACCCACTTC ATTTCCTAATACATTTCTTCCTTGCCTCCACATGCAGGGCGAGCATCGCG TGCCTTGTACTCTATCGAATTTGGTAAAGGATGCAGATCCTTATCAAGAC CTTGACCGGACGCAAGCAGTCTTTTAACTTTGAGCCAGAAGAGAAGGTGG AAGCGGTGAAGCAGGCGCTACAAGAAAAGGAGGGAATCCAGGTGGATCAA ATCCGTCTAATCTATGCTGGCAAACAGCTGGCGGACGACAAGACCCTCTC ATTCTACAACGTAGTCGCGGGGGGCACTATTCACATGGTCTTACAGCTCC GTGGTGGCGAGAGCGGGTAGATGAAGGTAGCGGCGGGAGGGGGAGAAAGC GCCGAGGGTTGAGGAAGGGATCGCAAGGGAATGGGGGGGCGATGTAGAGG TAAAAGTGAGGGGCGAGATACTTCTAAAGAATAAATCCGGTGAAAAAAAC TCCGTGAGTCCCGAGGTGT back to topprotein sequence of rna2567 >rna2567-protein ID=rna2567-protein|Name=rna2567|organism=Nannochloropsis gaditana|type=polypeptide|length=749bp MESDQRSQKGTNVGLHDEIAYESIDSHASPSRLGSMDRLGSSRLVTVGLA YEVCRDRGVVTGIKDAATVEDGTGCPAQGERGPSVDRAGTKSGSSNHLRL PALETAFSTKTQTKLRVSRGKSYEGEHFSLSWTITLQVPIKNPAVGESTD KGLWSLLRKGRSKASSDPPRRTKKTILDGLVGRAEKGQLMAVMGSSGCGK TSFLNCISMRNQSFVGNIFVNEKEIDGRYFSLAGFVHQDDLFLPTETVRE HLTFHALLRCDPCVRKDLRLKRVETLIKTVNLEHVSDSLLGGPGSFIRGL SGGERRRVSFATELLSDPVIIFADEFTTGLDASMAKSVCLALRKVAAGGR LVIGTIHQPSSDVFALFTHVMLMTQGRVIYMGPRTALAAYFERQGDPSLL CPPRHNPADFFVTLVALHPQDPVGSQKRIDNLVAIYQASPERVAMSDWQQ DVAFPELLLYHRSFKMRHFQASSYTQFRLCFQRNVRALFRDPMSFGAALG SGFITGIILGLAYATAPNAPATAEHVRNTEGLFFLANLQVFLIILYATIM AFSAETKVFMRENQAGANRVGAYYLSKTFTGWAVEIAMPFVFALLVWALA GLQRSPEGFFIFAGVMILNALCFGSIGYCLAAMTSDPQIAMAIAPVLVLP NVVFSGIMYDLSLTYGFREFLAYISILRYAQAAMLINEFPPSSTRFTSEI PNQEAVLEGLNAFPLSTNLWALASAAVVFRIIAYLILLLRTTRERIVVR back to topmRNA from alignment at CM002459.1:682747..685755+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2567 ID=rna2567|Name=rna2567|organism=Nannochloropsis gaditana|type=mRNA|length=3009bp|location=Sequence derived from alignment at CM002459.1:682747..685755+ (Nannochloropsis gaditana) CAAACACGAACATATACTCCGAATACGACCACAGGCACATTATAAGACTT
TTGCGTGATTCAACGTGCCGCATTCCCACTTCCGTCTATACTTTCAAGAC
AAATGGAATCAGATCAGGTACGTGCGTTCGAGATACTAAGAGACCGCTTC
TGACCTCGAAAAAAGGGCGTGACTGTTGTATGCAATTTTTTCGTCGGGAG
ATTGTTCAGAGCCTCGTCAAATGTGCTTAACTATTTGGAGTAGATCAATT
TTGTTAATTGGAGATTCTTTCAAGATTGTGCTGTCCCATGCCCCACTTAC
TCGGGCAAATATTCCTATCAGTACAGAGACAGTCGTCGTAGTCATTAACC
GAACATGGAACGGTTTCAGACTAGATTGAGTACACTTTACGAGAATTCAT
TTCTGACAAGGACACTTTGTCTCATCCGTTCTTGTTCTTTTTATGTCTTA
CATCATCAGAGGTCCCAGAAAGGAACCAATGTCGGCTTACATGACGAGAT
TGCGTACGAGAGCATAGACTCGCACGCATCACCGAGTCGTTTAGGCAGCA
TGGACAGACTTGGTTCCTCCCGTTTGGTTACTGTGGGGCTGGCATATGAG
GTTTGCCGGGACCGAGGCGTGGTGACGGGTATCAAAGATGCAGCTACCGT
TGAGGATGGAACGGGGTGCCCCGCACAAGGCGAGCGTGGACCTAGCGTCG
ACCGTGCAGGCACCAAAAGTGGGTCCTCTAATCACCTGCGGCTGCCGGCT
TTGGAGACTGCCTTCTCCACCAAAACCCAGACGAAGCTCAGAGTGTCGCG
AGGCAAGTCCTACGAGGGGGAGCACTTTTCGCTTAGCTGGACGATTACAC
TGCAGGTACCCATTAAAAATCCCGCTGTTGGGGAGTCTACGGATAAAGGG
CTATGGAGCTTGCTCcgcaaaggaagaagcaaggcGAGCTCGGATCCTCC
CCGTAGGACGAAGAAGACTATCTTGGACGGTCttgtggggagggcggaga
aagggcaaTTGATGGCCGTGATGGGGTCCTCGGGTTGTGGGAAGACATCC
TTCTTAAATTGCATTTCCATGCGGAACCAAAGTTTTGTGGGTAACATCTT
CGTGAACGAGAAGGAGATCGACGGGCGCTACTTCAGCCTCGCGGGCTTTG
TGCACCAGGACGACCTATTCCTCCCCACAGAGACCGTGCGCGAGCATCTC
ACCTTCCATGCCTTGCTGCGGTGTGACCCCTGCGTCCGCAAAGACCTGCG
GCTGAAGCGCGTGGAGACTTTGATCAAGACCGTGAACCTTGAGCACGTGT
CCGACAGCCTCTTAGGCGGCCCGGGAAGCTTCATTCGAGGCCTCTCCGGC
GGCGAGCGTCGGCGCGTTTCCTTTGCTACGGAACTCCTTTCAGACCCCGT
CATCATCTTTGCCGACGAGTTCACGACGGGTTTGGATGCGTCCATGGCCA
AGAGCGTGTGCCTGGCCCTCCGAAAAGTGGCCGCCGGGGGCCGCCTTGTC
ATCGGCACCATCCACCAGCCCTCGTCCGACGTCTTCGCGCTCTTTACACA
CGTCATGCTCATGACGCAGGGTCGGGTTATCTACATGGGCCCGCGCACCG
CGCTTGCTGCCTACTTCGAGCGGCAAGGAGATCCGTCACTACTCTGCCCA
CCCCGGCACAACCCGGCGGACTTCTTCGTCACGctcgtcgccctccatcc
gcaAGACCCCGTCGGTAGCCAAAAAAGGATCGACAATCTAGTGGCCATCT
ATCAGGCATCGCCCGAGCGCGTGGCCATGTCTGACTGGCAGCAAGACGTG
GCCTTCCCCGAGCTCTTGCTCTACCACCGGAGCTTTAAGATGAGGCATTT
TCAGGCCTCCAGCTACACGCAATTTCGCTTGTGCTTCCAACGAAATGTTC
GCGCTCTGTTCCGCGACCCCATGTCATTTGGGGCCGCATTGGGCAGCGGA
TTTATCACAGGAATCATCCTCGGGTTGGCCTACGCCACTGCGCCTAATGC
CCCAGCTACGGCGGAGCATGTCCGAAACACGGAGGGTTTGTTCTTTTTGG
CCAATTTGCAAGTCTTCTTGATCATATTGTACGCAACTATCATGGCATTC
TCAGCGGAAACCAAGGTCTTCATGCGGGAGAATCAGGCGGGGGCGAACCG
AGTCGGGGCGTACTACCTTTCCAAGACGTTCACGGGCTGGGCGGTGGAGA
TAGCCATGCCCTTTGTCTTTGCACTTCTCGTCTGGGCACTGGCAGGCCTG
CAACGGTCACCGGAAGGATTTTTCATTTTCGCGGGCGTGATGATTTTGAA
CGCCCTGTGCTTCGGCTCTATAGGGTACTGCCTAGCCGCCATGACAAGTG
ATCCGCAAATCGCAATGGCCATCGCCCCCGTCTTGGTCCTACCCAATGTT
GTTTTCTCCGGCATCATGTACGATTTGTCCCTCACCTACGGCTTTCGGGA
ATTTCTTGCCTACATATCTATTCTTCGCTACGCACAAGCCGCGATGCTCA
TCAACGAATTTCCTCCGTCGAGCACTCGCTTTACATCAGAGATTCCTAAC
CAGGAGGCAGTACTGGAAGGTTTGAATGCATTCCCCCTGAGCACTAACTT
ATGGGCATTAGCATCTGCCGCAGTGGTATTTCGGATCATAGCCTACCTCA
TCCTCTTGCTCAGAACCACTCGAGAAAGGATTGTCGTGCGCTAGCAAAGT
GCAGGTGGAAAAGTACCGTAAATGGATGAACGCGAAATTCTGCACTGATT
CAATTTTGTTCGAACAGGTATCATGCAGCGACACTCAGATTGTAACACCT
AACACGAGTGAAATTAGGCGACCCTCCAGAAGTTTTTAGGCacgatggag
ggagcgagaatGATTGCCTGTATCGCGACGAATCAGAAGAGGATTTCTCT
GTTTCATCAGGGCTTTTCTGCTTTTTCCAAAGGAAAATTATAATATCAGC
GCCATAAATTAAACGCATAAAATGTCAAAGAAATAAATGTCAGCGCAGTA
GCATGGGCC back to topCoding sequence (CDS) from alignment at CM002459.1:682747..685755+ >rna2567 ID=rna2567|Name=rna2567|organism=Nannochloropsis gaditana|type=CDS|length=4500bp|location=Sequence derived from alignment at CM002459.1:682747..685755+ (Nannochloropsis gaditana) ATGGAATCAGATCAGAGGTCCCAGAAAGGAACCAATGTCGGCTTACATGA CGAGATTGCGTACGAGAGCATAGACTCGCACGCATCACCGAGTCGTTTAG GCAGCATGGACAGACTTGGTTCCTCCCGTTTGGTTACTGTGGGGCTGGCA TATGAGGTTTGCCGGGACCGAGGCGTGGTGACGGGTATCAAAGATGCAGC TACCGTTGAGGATGGAACGGGGTGCCCCGCACAAGGCGAGCGTGGACCTA GCGTCGACCGTGCAGGCACCAAAAGTGGGTCCTCTAATCACCTGCGGCTG CCGGCTTTGGAGACTGCCTTCTCCACCAAAACCCAGACGAAGCTCAGAGT GTCGCGAGGCAAGTCCTACGAGGGGGAGCACTTTTCGCTTAGCTGGACGA TTACACTGCAGGTACCCATTAAAAATCCCGCTGTTGGGGAGTCTACGGAT AAAGGGCTATGGAGCTTGCTCcgcaaaggaagaagcaaggcGAGCTCGGA TCCTCCCCGTAGGACGAAGAAGACTATCTTGGACGGTCttgtggggaggg cggagaaagggcaaTTGATGGCCGTGATGGGGTCCTCGGGTTGTGGGAAG ACATCCTTCTTAAATTGCATTTCCATGCGGAACCAAAGTTTTGTGGGTAA CATCTTCGTGAACGAGAAGGAGATCGACGGGCGCTACTTCAGCCTCGCGG GCTTTGTGCACCAGGACGACCTATTCCTCCCCACAGAGACCGTGCGCGAG CATCTCACCTTCCATGCCTTGCTGCGGTGTGACCCCTGCGTCCGCAAAGA CCTGCGGCTGAAGCGCGTGGAGACTTTGATCAAGACCGTGAACCTTGAGC ACGTGTCCGACAGCCTCTTAGGCGGCCCGGGAAGCTTCATTCGAGGCCTC TCCGGCGGCGAGCGTCGGCGCGTTTCCTTTGCTACGGAACTCCTTTCAGA CCCCGTCATCATCTTTGCCGACGAGTTCACGACGGGTTTGGATGCGTCCA TGGCCAAGAGCGTGTGCCTGGCCCTCCGAAAAGTGGCCGCCGGGGGCCGC CTTGTCATCGGCACCATCCACCAGCCCTCGTCCGACGTCTTCGCGCTCTT TACACACGTCATGCTCATGACGCAGGGTCGGGTTATCTACATGGGCCCGC GCACCGCGCTTGCTGCCTACTTCGAGCGGCAAGGAGATCCGTCACTACTC TGCCCACCCCGGCACAACCCGGCGGACTTCTTCGTCACGctcgtcgccct ccatccgcaAGACCCCGTCGGTAGCCAAAAAAGGATCGACAATCTAGTGG CCATCTATCAGGCATCGCCCGAGCGCGTGGCCATGTCTGACTGGCAGCAA GACGTGGCCTTCCCCGAGCTCTTGCTCTACCACCGGAGCTTTAAGATGAG GCATTTTCAGGCCTCCAGCTACACGCAATTTCGCTTGTGCTTCCAACGAA ATGTTCGCGCTCTGTTCCGCGACCCCATGTCATTTGGGGCCGCATTGGGC AGCGGATTTATCACAGGAATCATCCTCGGGTTGGCCTACGCCACTGCGCC TAATGCCCCAGCTACGGCGGAGCATGTCCGAAACACGGAGGGTTTGTTCT TTTTGGCCAATTTGCAAGTCTTCTTGATCATATTGTACGCAACTATCATG GCATTCTCAGCGGAAACCAAGGTCTTCATGCGGGAGAATCAGGCGGGGGC GAACCGAGTCGGGGCGTACTACCTTTCCAAGACGTTCACGGGCTGGGCGG TGGAGATAGCCATGCCCTTTGTCTTTGCACTTCTCGTCTGGGCACTGGCA GGCCTGCAACGGTCACCGGAAGGATTTTTCATTTTCGCGGGCGTGATGAT TTTGAACGCCCTGTGCTTCGGCTCTATAGGGTACTGCCTAGCCGCCATGA CAAGTGATCCGCAAATCGCAATGGCCATCGCCCCCGTCTTGGTCCTACCC AATGTTGTTTTCTCCGGCATCATGTACGATTTGTCCCTCACCTACGGCTT TCGGGAATTTCTTGCCTACATATCTATTCTTCGCTACGCACAAGCCGCGA TGCTCATCAACGAATTTCCTCCGTCGAGCACTCGCTTTACATCAGAGATT CCTAACCAGGAGGCAGTACTGGAAGGTTTGAATGCATTCCCCCTGAGCAC TAACTTATGGGCATTAGCATCTGCCGCAGTGGTATTTCGGATCATAGCCT ACCTCATCCTCTTGCTCAGAACCACTCGAGAAAGGATTGTCGTGCGCTAG ATGGAATCAGATCAGAGGTCCCAGAAAGGAACCAATGTCGGCTTACATGA CGAGATTGCGTACGAGAGCATAGACTCGCACGCATCACCGAGTCGTTTAG GCAGCATGGACAGACTTGGTTCCTCCCGTTTGGTTACTGTGGGGCTGGCA TATGAGGTTTGCCGGGACCGAGGCGTGGTGACGGGTATCAAAGATGCAGC TACCGTTGAGGATGGAACGGGGTGCCCCGCACAAGGCGAGCGTGGACCTA GCGTCGACCGTGCAGGCACCAAAAGTGGGTCCTCTAATCACCTGCGGCTG CCGGCTTTGGAGACTGCCTTCTCCACCAAAACCCAGACGAAGCTCAGAGT GTCGCGAGGCAAGTCCTACGAGGGGGAGCACTTTTCGCTTAGCTGGACGA TTACACTGCAGGTACCCATTAAAAATCCCGCTGTTGGGGAGTCTACGGAT AAAGGGCTATGGAGCTTGCTCcgcaaaggaagaagcaaggcGAGCTCGGA TCCTCCCCGTAGGACGAAGAAGACTATCTTGGACGGTCttgtggggaggg cggagaaagggcaaTTGATGGCCGTGATGGGGTCCTCGGGTTGTGGGAAG ACATCCTTCTTAAATTGCATTTCCATGCGGAACCAAAGTTTTGTGGGTAA CATCTTCGTGAACGAGAAGGAGATCGACGGGCGCTACTTCAGCCTCGCGG GCTTTGTGCACCAGGACGACCTATTCCTCCCCACAGAGACCGTGCGCGAG CATCTCACCTTCCATGCCTTGCTGCGGTGTGACCCCTGCGTCCGCAAAGA CCTGCGGCTGAAGCGCGTGGAGACTTTGATCAAGACCGTGAACCTTGAGC ACGTGTCCGACAGCCTCTTAGGCGGCCCGGGAAGCTTCATTCGAGGCCTC TCCGGCGGCGAGCGTCGGCGCGTTTCCTTTGCTACGGAACTCCTTTCAGA CCCCGTCATCATCTTTGCCGACGAGTTCACGACGGGTTTGGATGCGTCCA TGGCCAAGAGCGTGTGCCTGGCCCTCCGAAAAGTGGCCGCCGGGGGCCGC CTTGTCATCGGCACCATCCACCAGCCCTCGTCCGACGTCTTCGCGCTCTT TACACACGTCATGCTCATGACGCAGGGTCGGGTTATCTACATGGGCCCGC GCACCGCGCTTGCTGCCTACTTCGAGCGGCAAGGAGATCCGTCACTACTC TGCCCACCCCGGCACAACCCGGCGGACTTCTTCGTCACGctcgtcgccct ccatccgcaAGACCCCGTCGGTAGCCAAAAAAGGATCGACAATCTAGTGG CCATCTATCAGGCATCGCCCGAGCGCGTGGCCATGTCTGACTGGCAGCAA GACGTGGCCTTCCCCGAGCTCTTGCTCTACCACCGGAGCTTTAAGATGAG GCATTTTCAGGCCTCCAGCTACACGCAATTTCGCTTGTGCTTCCAACGAA ATGTTCGCGCTCTGTTCCGCGACCCCATGTCATTTGGGGCCGCATTGGGC AGCGGATTTATCACAGGAATCATCCTCGGGTTGGCCTACGCCACTGCGCC TAATGCCCCAGCTACGGCGGAGCATGTCCGAAACACGGAGGGTTTGTTCT TTTTGGCCAATTTGCAAGTCTTCTTGATCATATTGTACGCAACTATCATG GCATTCTCAGCGGAAACCAAGGTCTTCATGCGGGAGAATCAGGCGGGGGC GAACCGAGTCGGGGCGTACTACCTTTCCAAGACGTTCACGGGCTGGGCGG TGGAGATAGCCATGCCCTTTGTCTTTGCACTTCTCGTCTGGGCACTGGCA GGCCTGCAACGGTCACCGGAAGGATTTTTCATTTTCGCGGGCGTGATGAT TTTGAACGCCCTGTGCTTCGGCTCTATAGGGTACTGCCTAGCCGCCATGA CAAGTGATCCGCAAATCGCAATGGCCATCGCCCCCGTCTTGGTCCTACCC AATGTTGTTTTCTCCGGCATCATGTACGATTTGTCCCTCACCTACGGCTT TCGGGAATTTCTTGCCTACATATCTATTCTTCGCTACGCACAAGCCGCGA TGCTCATCAACGAATTTCCTCCGTCGAGCACTCGCTTTACATCAGAGATT CCTAACCAGGAGGCAGTACTGGAAGGTTTGAATGCATTCCCCCTGAGCAC TAACTTATGGGCATTAGCATCTGCCGCAGTGGTATTTCGGATCATAGCCT ACCTCATCCTCTTGCTCAGAACCACTCGAGAAAGGATTGTCGTGCGCTAG back to top
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