rna2565, rna2565 (mRNA) Nannochloropsis gaditana

Overview
Namerna2565
Unique Namerna2565
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length309
Alignment locationCM002459.1:679017..679486 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100036g19.2540.mrna
Orig protein idgnl|cribi|Naga_100036g19.2540
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:679017..679486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100036g19gene2452Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2565rna2565-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28120.1cds2557Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2565 ID=rna2565|Name=rna2565|organism=Nannochloropsis gaditana|type=mRNA|length=309bp
ATGGTGGATGCATTCGCAATCATTCTCAATCCGAATGCCGTCCTTCTCAT
ACTACAGACGCTAAGTCGCCTACAATATGTCTGCTGTAAAAGTTCTTATC
CGCGAGGCCATGATCGGTACAGGCCTGGGCGTCCTCGGTGGCGTTGTCTG
GAAGGTGGCCATCGCGGCCCCCACAAACCGCACGTACAAGACATACTACA
AGAGCTTGGAGGCAACGGATGCCTCAAGTGCTTCGGCATCTCCCGAGAAT
GCGGAGATCCTCGAGAAGATGGAAAAGGTCATTGCCACACTCGAGGGCGG
AGCGGATGA
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protein sequence of rna2565

>rna2565-protein ID=rna2565-protein|Name=rna2565|organism=Nannochloropsis gaditana|type=polypeptide|length=82bp
MCRSNGPALMRRWTQGGWLAVCPFLPRARETSRHELCIVRVPAMLGRGSS
GEHPEGSVTRQWEGEWPLGNRSRFALRPRTFK
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mRNA from alignment at CM002459.1:679017..679486+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2565 ID=rna2565|Name=rna2565|organism=Nannochloropsis gaditana|type=mRNA|length=470bp|location=Sequence derived from alignment at CM002459.1:679017..679486+ (Nannochloropsis gaditana)
ATGTGTAGGTCTAATGGTCCCGCTCTGATGCGGAGATGGACTCAGTAAAA
GTATCGTGAAGGCTGCGGTTGAAAATGAGCCAAGACAAGAGGTGGATGGC
TGGCAGTGTGTCCATTCCTTCCACGGGCTCGAGAGACAAGCCGGCATGAA
TTATGCATAGTACGAGTGCCTGCCAtgctggggagggggagttcCGGGGA
GCACCCTGAAGGCAGTGTGACGAGACAGTGGGAAGGCGAGTGGCCCCTAG
GGAATAGATCGCGTTTTGTCGAAAGTCGCTCTTTTGTCTGTTTCTTGCCT
CGTTGCAAGCTTCGGTTACTGCCCAAAACATGCGCACTCCTTCGTGCCAT
AGATTCTTCCGaatcctgcttcttcctggcCGCACTCGATGACCGCGCTC
TGGCTTCGACGCCGGACCTGTCTCtgtcctccgtcctccccagGCACTCA
GACCGCGCACTTTCAAGTGA
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Coding sequence (CDS) from alignment at CM002459.1:679017..679486+

>rna2565 ID=rna2565|Name=rna2565|organism=Nannochloropsis gaditana|type=CDS|length=747bp|location=Sequence derived from alignment at CM002459.1:679017..679486+ (Nannochloropsis gaditana)
ATGTGTAGGTCTAATGGTCCCGCTCTGATGCGGAGATGGACTCAAGGTGG
ATGGCTGGCAGTGTGTCCATTCCTTCCACGGGCTCGAGAGACAAGCCGGC
ATGAATTATGCATAGTACGAGTGCCTGCCAtgctggggagggggagttcC
GGGGAGCACCCTGAAGGCAGTGTGACGAGACAGTGGGAAGGCGAGTGGCC
CCTAGGGAATAGATCGCGTTTTGCACTCAGACCGCGCACTTTCAAGTGAA
TGTGTAGGTCTAATGGTCCCGCTCTGATGCGGAGATGGACTCAAGGTGGA
TGGCTGGCAGTGTGTCCATTCCTTCCACGGGCTCGAGAGACAAGCCGGCA
TGAATTATGCATAGTACGAGTGCCTGCCAtgctggggagggggagttcCG
GGGAGCACCCTGAAGGCAGTGTGACGAGACAGTGGGAAGGCGAGTGGCCC
CTAGGGAATAGATCGCGTTTTGCACTCAGACCGCGCACTTTCAAGTGAAT
GTGTAGGTCTAATGGTCCCGCTCTGATGCGGAGATGGACTCAAGGTGGAT
GGCTGGCAGTGTGTCCATTCCTTCCACGGGCTCGAGAGACAAGCCGGCAT
GAATTATGCATAGTACGAGTGCCTGCCAtgctggggagggggagttcCGG
GGAGCACCCTGAAGGCAGTGTGACGAGACAGTGGGAAGGCGAGTGGCCCC
TAGGGAATAGATCGCGTTTTGCACTCAGACCGCGCACTTTCAAGTGA
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Synonyms
Publications