rna2564, rna2564 (mRNA) Nannochloropsis gaditana

Overview
Namerna2564
Unique Namerna2564
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1359
Alignment locationCM002459.1:678359..678992 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100036g20.2529.mrna
Orig protein idgnl|cribi|Naga_100036g20.2529
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:678359..678992 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100036g20gene2451Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2564rna2564-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28109.1cds2556Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2564 ID=rna2564|Name=rna2564|organism=Nannochloropsis gaditana|type=mRNA|length=1359bp
CGGTCCTCGTGTCGGTCCACAAGACCCGCGACCTCCCCCCGCCCTTCCCC
GTGCCAGCCAGCCGCAAACACCAAAACCTTGAAAGAAAAGGTGGAAGGCA
AGGAGGACATGTCTGACTGTTCTGGAATCATGATCCTTTTCCCCATGCAC
GGGCAGGTGCCAGGTATCAAATTGTGACCAGCATGAATAACTACCTCCTG
CCCCTGGTCCTGGCCTTCCTCTGCCACTATAGCTTCGCCTTCATCAAGCC
CTTCGCACCGAAAATTCGGTCCCAACGTTTGACATCTCTTCAACCTGATG
GAAATGCTCATTTTCGGAGATCGAGGGTTGTGGTGAGTATGGGCAAAGGC
CGTAAAGCAGAGAAGAAACGTAAATCGGCACCTCCTGCACGCCGGGAGGT
CGCCAGCCCCAAAGCTGCACCCGGAAGTCAAACTCAGGACAAAGAGCCTG
AGTCCTTCGGCATCCTTGGATCTGATGGTGGAATGGGTCCAATTAATAGT
CAAGTAGGCGTGGGCTTTGGGACCCCAAAGGCCTCTTCGCCTGGGAAGCT
CTCGCCCGTCGACGTCGACGACGCCTACGAACGGGCTCTCAGCAAGGTCA
AAGGCCAGGACCGTTTGTCTTCTTCTCCATTAAGAGGTGGGGGGGGTGTC
TCTAAAGGTCTAGGGGAGCCTTCCGCTGATGGAAAGGTGCCGGTGCGCAA
CATCGGGCTCTTGGACGTGATACCTGAGTCAGTGCAAAGCAGTCTCGAGC
TGGTTCTTATCGGACTTCTGGCCTTGAATTTGGTAGTCATCATTGGCATT
GGAACTGGATTCGCGGTACAAGCACTACCCACTTCGAACCTTGAGTTGCC
GGAGAGCCTTGTGGCATTGTCCAAGAAGGTGGAGCCGCTCATCGAAAAAT
CTGAGTTTTACTTTACGCCCAGCTTGGGAGTGTTCTTCCTGCTTTCCACG
CTTCTGGGGTCGTTCAAAATTTCGCAGCTGTCTCGCGGGGGCACAACCTA
TGTTGAGAAGAAGGATTTGAAGATAAGAAAATAGGCAACAGCACGACAAA
TGATTCTCTTTGTCGGGACCGTCGGCCTACAGGAGCTGTCTCGGCTTCTG
CGATGGATTGGCTCCCTGTCTTCCATCCGTGTATTCCATCTGTTTTCCTC
TATCCTTTTGTACAGCTTGCGCTAGAAAATGTCGCGCCTGACACAGATGG
CGCATAAGTGCGCCGACAAGGCCGCCCGAAAGGACGAAGATATCGATCGA
GTCAAGAAACGCTATCAAAGCCTGGATCCCTCTTTTACTTTCTCGTGTCT
TTCTTCTTTATTTCTGGACCAAGGATAAAAGCTCTAAAAGATATAGTTAA
GGAGTCGAG
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protein sequence of rna2564

>rna2564-protein ID=rna2564-protein|Name=rna2564|organism=Nannochloropsis gaditana|type=polypeptide|length=102bp
MVDAFAIILNPNAVLLILQTLSRLQYVCCKSSYPRGHDRYRPGRPRWRCL
EGGHRGPHKPHVQDILQELGGNGCLKCFGISRECGDPREDGKGHCHTRGR
SG
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mRNA from alignment at CM002459.1:678359..678992+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2564 ID=rna2564|Name=rna2564|organism=Nannochloropsis gaditana|type=mRNA|length=634bp|location=Sequence derived from alignment at CM002459.1:678359..678992+ (Nannochloropsis gaditana)
ATGGTGGATGCATTGTCCGTGGACGCGCAGCCGGGATGCATGAATCCCAA
GCATACATCTAGCCAGTGCCGGTAAACTAGCGCAATCATTCTCAATCCGA
ATGCCGTCCTTCTCATACTACAGACGCTAAGTCGCCTACAATATGTCTGC
TGTAAAAGTTCTTATCCGCGAGGCCATGATCGGTACAGGCCTGGGCGTCC
TCGGTGAGTAGAAAGTCCCGAAACGGGATCAATCGCAGGGCTCTGATAGT
CAATGTGTGCTCTTTCCTTGGGGGGGCTGGGCTATCAAGCATCCGGCCTC
CAGATTTATTTACTCATCAGATGAGACTTGTGAATTCCCAAACAGGTGGC
GTTGTCTGGAAGGTGGCCATCGCGGCCCCCACAAACCGCACGTACAAGAC
ATACTACAAGGTAAGCCCGTACATGACCTTCAGTAACGGTTGTACGGCTG
TGCGTTTGGAAAGCCATCATGAGTTATCACTTTTGACTCAACATACTTCT
TAATCGGCCTGTCGTTGTTTTTTGCAGAGCTTGGAGGCAACGGATGCCTC
AAGTGCTTCGGCATCTCCCGAGAATGCGGAGATCCTCGAGAAGATGGAAA
AGGTCATTGCCACACTCGAGGGCGGAGCGGATGA
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Coding sequence (CDS) from alignment at CM002459.1:678359..678992+

>rna2564 ID=rna2564|Name=rna2564|organism=Nannochloropsis gaditana|type=CDS|length=1236bp|location=Sequence derived from alignment at CM002459.1:678359..678992+ (Nannochloropsis gaditana)
ATGGTGGATGCATTCGCAATCATTCTCAATCCGAATGCCGTCCTTCTCAT
ACTACAGACGCTAAGTCGCCTACAATATGTCTGCTGTAAAAGTTCTTATC
CGCGAGGCCATGATCGGTACAGGCCTGGGCGTCCTCGGTGGCGTTGTCTG
GAAGGTGGCCATCGCGGCCCCCACAAACCGCACGTACAAGACATACTACA
AGAGCTTGGAGGCAACGGATGCCTCAAGTGCTTCGGCATCTCCCGAGAAT
GCGGAGATCCTCGAGAAGATGGAAAAGGTCATTGCCACACTCGAGGGCGG
AGCGGATGAATGGTGGATGCATTCGCAATCATTCTCAATCCGAATGCCGT
CCTTCTCATACTACAGACGCTAAGTCGCCTACAATATGTCTGCTGTAAAA
GTTCTTATCCGCGAGGCCATGATCGGTACAGGCCTGGGCGTCCTCGGTGG
CGTTGTCTGGAAGGTGGCCATCGCGGCCCCCACAAACCGCACGTACAAGA
CATACTACAAGAGCTTGGAGGCAACGGATGCCTCAAGTGCTTCGGCATCT
CCCGAGAATGCGGAGATCCTCGAGAAGATGGAAAAGGTCATTGCCACACT
CGAGGGCGGAGCGGATGAATGGTGGATGCATTCGCAATCATTCTCAATCC
GAATGCCGTCCTTCTCATACTACAGACGCTAAGTCGCCTACAATATGTCT
GCTGTAAAAGTTCTTATCCGCGAGGCCATGATCGGTACAGGCCTGGGCGT
CCTCGGTGGCGTTGTCTGGAAGGTGGCCATCGCGGCCCCCACAAACCGCA
CGTACAAGACATACTACAAGAGCTTGGAGGCAACGGATGCCTCAAGTGCT
TCGGCATCTCCCGAGAATGCGGAGATCCTCGAGAAGATGGAAAAGGTCAT
TGCCACACTCGAGGGCGGAGCGGATGAATGGTGGATGCATTCGCAATCAT
TCTCAATCCGAATGCCGTCCTTCTCATACTACAGACGCTAAGTCGCCTAC
AATATGTCTGCTGTAAAAGTTCTTATCCGCGAGGCCATGATCGGTACAGG
CCTGGGCGTCCTCGGTGGCGTTGTCTGGAAGGTGGCCATCGCGGCCCCCA
CAAACCGCACGTACAAGACATACTACAAGAGCTTGGAGGCAACGGATGCC
TCAAGTGCTTCGGCATCTCCCGAGAATGCGGAGATCCTCGAGAAGATGGA
AAAGGTCATTGCCACACTCGAGGGCGGAGCGGATGA
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Synonyms
Publications