rna2563, rna2563 (mRNA) Nannochloropsis gaditana

Overview
Namerna2563
Unique Namerna2563
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length4276
Alignment locationCM002459.1:676852..678210 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100036g21.2533.mrna
Orig protein idgnl|cribi|Naga_100036g21.2533
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:676852..678210 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100036g21gene2450Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28113.1cds2555Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2563rna2563-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2563 ID=rna2563|Name=rna2563|organism=Nannochloropsis gaditana|type=mRNA|length=4276bp
AAACTGGATTTTCAAGACAACTGCGTGCACATTTTCAGTATATTCATTGC
CTTGCAAATTTGTTGTGGCGGTTGGACCCAAAATTGACCGACTGACCGGC
TCCTGGGTAGCCAGCTCCTCCTCCCTTTTCAGTCTCGTCGTCCTTTCTTC
TGTGCAGCAGTGCATACGGGGGTTCTCGGAGGACCACCGCAGCACTTTTT
TGGATTGGAAGGAATGTTTTTGTGAGAAAAATAGGATCTATTCGTCAGGG
CACCCTGGAAAGTGAATCACGTAGCAAAGGATGGAATACTCAGCACATCC
TGGAGGAACAAATCTCCATTAAGAACCGTTGACGCTCACCGTGGCTAGTA
CATCCCCTTTAAACTGTCCACTTCCAATCTTTAACACAGGATAGGGTTCA
TTTGTGTTTCGCTCGCTGAAGGGAAGCAAAGACCAGTCAGATTTCTTTCA
ACACTCTTCAGCCAATCTCGGGCGCGATGTCCCGGACCTTAGAAGGTGGG
AAAAAGCGAGGCGGTGGCAGCGGCGGCGCTGGAAGAGGAAGTGGGGGACG
TTCTCAGCAGCATAGTGGTGAAAAATTAGACCTTAAGCAGTTGATGGAGT
TTGCACCACCTGGGACTACCCCCGATCAAATTCTTGAGATGAGCAAGAAG
TTTAGAGAACGGGAGAAGCTGAAGGAGGAGATCTGCAAGTTGTGGGACGC
TCCAGCGAGCAATCCAGAAGACGAATGGCACGATGTCGGTAGGAAGAAGA
AGGAACCGATGGTCGCGCCCAGCTCTCGCGGCGGAAGGGGGGGACGTGCC
AGTCCCTCGGACGCAAGACGGGGCGCTCCGGGCCAAGTGCTGGATGCCCG
ATTAGCGGGATCCTCGGGTCTAGGTGCCAGAAATGGGCCCATCGTGAACG
GCCGGGGAAGGAGTGCGCCTCCCGGTCATCGGGGAGGGCGGAGTGGCGGC
AGGGGAGGGGGCGGCTCGGGCGTGGTGATGGTGGGGGGTCCAGGGCCTGC
CTACAGCAACAGCGAGAGTCGATCGACGTCCGTGGGGCCAAAGGCCTCTT
CCGGCAACGGAACCGCTGGGCCGCCTCGGACGGGTGGGCGGAAGCCCGGT
CCCTCCGAAATGGCTGAGGCCCCCGGCGATGCCGCCGACCCCGCCAGGGG
CACGGGGAGACCGGGGGCCTTGCCAGGCGGAGAGGCCCCTTGGGACCAGC
CCGTGTCCTCAGTCTTGTCGGGCAAGCCTAGCGCTGCAGTTGGCCCCTCT
TCGTCCTCCGCTGCCCCCTCGCCCGCGTCGGCTTCGACCGGCGCTGCCCC
GGCCCCCACCCGCCCTACCACCACGTCAACGGCCCGCGGCGCCAAGCCCG
GGCCCCATTCTGCTTCTGCCGCGAATGCGACCCCGCCGCCCGCCGCCACG
GGCACATGGGCTGCTTTGCTGAAACCGAAGCCCAAGCCGCCGCCTCCCCC
CCCCGCCCCCGTGCCCCCCCCTAGCAAGCAGACGCGCAAGGAGGTGGTCG
AGCCTGCTCCGGTGTCAGGTCCCGCCCCGACTCGACAGGGGCCGGGAGAG
CAACCACCAAAGATGCAGCATGCAAAAGAGGTGAAAGAATCACAAGCGCC
ACTACACACGCAACAGACGCGGCCAACAGGCCCGCCAGACGGAGTCATAC
TCAAAGAGGCGGATATATTGAAGATGAACGCCAGTGCTGGCCTGAAGAAA
AGCGACGCAGACAAAGCAATTGGTCCGAATACACCGGCATCGATAGGGGC
GACCGATTTGCCGCAGCGCCGTGTGCCAGCAGCAGTAGACGCTGGGGTTG
GAAAGCCCGCGAGGCGGCCGGAGGCGGATAGCCTGGAGGGTGCGGCAGAG
GGTCTGGGCCGGGTGAAGTTGGGGCAGTGGGATGCTTTGAACGCAGGCGG
CGATGCCGGGGGCAGCAACATCCTTTTTGGTGCCTTCGGTGTCGATGATT
CGTCGTCCAATAAGAAGAGTGCCGCGACCTCGGTGGCGGATATTTGGGGG
GGCAAGCCCGCTACATCACCTGTGGTGGCGGCCTCAGCCAAGCCTCCTTC
GGTTGCTGCTTCCCCTTCCACCAGCGCGCTTTCCCCCAAGGAGGCTGCTA
TCGGAGCACCCGTCCCTTCTGCAGGTACCCACGGACCATCCTCGTCTGCC
CGCCCTCCAGCGCCTCCTGGGCTCGGCGGGCCGCCCATTGTGAACGCCAC
ATCGGTCAAAGCCATTGAGAGCGCCGCGCAGCGAGTGGGAGCGGGTGGAC
CCAGCAAGCCGACCGGGCCGGTCGACGCGGTCAAGGGAAGGCCTGCCCAG
CAATCGCCCATCAAAGGAGGGATGAGCGTCCCACCGCACTCCAGCCACCC
TCACGGCGTTTCTGGGCCCCACACCGACCTTGTCGGGGGCCTTGGGGGGT
ACCCTCCTTACATGAACGGAACTTATGGCTTGGCCGCGGCGGGCGGCCCA
CCGGTGGGGGCGGCTGTCGGCTCGGACACGGGATTGGATAGCGCGTCGGT
GGGATATCCGGGTCAGCAGACCGCCCAGCCTGGGGCGGGTGCTGGGGTGG
TAAGCGGGGTGCGGGGGTCGCCCCTCGCGGCGCCTCCCTCCAGCACTGGC
TCCATGCCCGCAGCGACTTCTTCGTACCATGCTCAGCAGCAAGCACAGCC
GCAATCGACCTCCGGCGTTCCTCCTCACCTGTCTTCAGCCATGCAGCAGC
AACCACAACAGCAACAACAGCAGCCGCAACAGCCCGCTCCCTATGGTCAG
CCTCCTCCCGGCATGGCGCCCTACGGATACGGGTACTATCCTCCCTATTT
TTACCAGAATCAAGCTGCGTACGCCGCCCAGGGTGCGGTTGGCGGGGGTC
AATTCGCGTACGGTGGGCGAGGGGGCCTGGGGGGATATGGGAATCCAGGC
GCGAGGGGCGGGCAGTATGGGATGGATCAGTTTCCCGGCCCGCAGGCATC
GTCCATGCACTACGGGGGCGGGGCTATGGACTACCCCGGAGTAGGGGCTG
GAGCGCCATTTAACCCCCAAGACCAATTCATAGCCGGTGGAGGCCAGAGT
CACGGCGGAGCCGGCGGGGGAGGAAGCAAGACAAGTGGTTCTCACGCGAG
CTCTCACTCGCATGGACATTCGCATATCGGGAGCGCGCATGACCACCTCT
CTGGGGGCCCTCACGGCGGGGTACAATCCGGAAACAAGGCTCAAGGCGGT
GCTTCCGGCGGCCCCTCGTTCGGTGGCGGCGGTTACGGGGGAAATCAGTC
GGTGGGGTCCCACATCGGCGGAGGAGGCTACCAAGGACGCAACCCGGGGT
TGGACCAAGCGGGGGCCCAAAGTGGATGGGCCGGAGGCCAGTATCAGGCG
CCGGGTGGGGCGCATACCTGGATGTCGCACGGACCGCAGGGAGGCAGCCA
TGCCATGGGCTTCGGTCAGCAGGCGGGGGCCATGACCAGTTCGCACTCCC
ACGGGAACCCCAACATGATGCAGCAGCAGCAGCAACAGCAGCAGCAGCAG
TTCCAGGGATACGGCCGCGGGGGTGCCGGAGGCATGAGCAGTGGAGCTCA
GAATTGGAGCTAAAAGAGTTGTGGGCGCGGAGAGATGGGCGATGCCTCAA
GAGAAGGGGGAGAGGAGGGAAAATGGGAGAGGGTAGTCAGTCAAGCAGAC
AGTGTTCGAGACGTTGGTCTGGATTACAGCGCCACTTTATTTGTCTATGG
TAATTGGTAGCGGAGGGAGTCGACGCTCTGCCTTTGTGGTCTCTTAAGTG
TGTCTTTTATCCTCGGACGTAGCTGTTCAGATGACTGCCTTCTCAGACCT
TAGATGGGGGTTGAAGGCAAGGATGCGTCCCGTCAAATAGCCTTTCCTTG
GCGGAGGAGAGGCATTGAAGATAGGGCGTGTATTCACGTGGAAGACGCTA
CGACTCGAAGAGGCAGGGGTGGTAGCGGTGCTGTGCTGGTAGAAGAGAGG
AAAAGAGGAGGGCAAAGGAAGAGACACGAGGGATTCGGGGCTGTATTAAG
ACTCAATGTCGGGCGGGTGCATTTCTCTGAAAATACCACTGAGATGTCGC
TTCCGGCCTCGGTACATTGCTTTCCCCTTGCTGTGCAACCCAATGCCTCG
GAGATAGGGTTGGCTGCATCATAGCCGAGGCGGAAGCGAGGGAGGGGGGG
ATCTTGTCTCACTCAGAGGCAGTATTGTGAAGAGTTTTTCGTCTCTCGAC
TCCTTAACTATATCTTTTAGAGCTTTTATCCTTGGTCCAGAAATAAAGAA
GAAAGACACGAGAAAGTAAAAGAGGG
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protein sequence of rna2563

>rna2563-protein ID=rna2563-protein|Name=rna2563|organism=Nannochloropsis gaditana|type=polypeptide|length=283bp
MNNYLLPLVLAFLCHYSFAFIKPFAPKIRSQRLTSLQPDGNAHFRRSRVV
VSMGKGRKAEKKRKSAPPARREVASPKAAPGSQTQDKEPESFGILGSDGG
MGPINSQVGVGFGTPKASSPGKLSPVDVDDAYERALSKVKGQDRLSSSPL
RGGGGVSKGLGEPSADGKVPVRNIGLLDVIPESVQSSLELVLIGLLALNL
VVIIGIGTGFAVQALPTSNLELPESLVALSKKVEPLIEKSEFYFTPSLGV
FFLLSTLLGSFKISQLSRGGTTYVEKKDLKIRK
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mRNA from alignment at CM002459.1:676852..678210-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2563 ID=rna2563|Name=rna2563|organism=Nannochloropsis gaditana|type=mRNA|length=1359bp|location=Sequence derived from alignment at CM002459.1:676852..678210- (Nannochloropsis gaditana)
CGGTCCTCGTGTCGGTCCACAAGACCCGCGACCTCCCCCCGCCCTTCCCC GTGCCAGCCAGCCGCAAACACCAAAACCTTGAAAGAAAAGGTGGAAGGCA AGGAGGACATGTCTGACTGTTCTGGAATCATGATCCTTTTCCCCATGCAC GGGCAGGTGCCAGGTATCAAATTGTGACCAGCATGAATAACTACCTCCTG CCCCTGGTCCTGGCCTTCCTCTGCCACTATAGCTTCGCCTTCATCAAGCC CTTCGCACCGAAAATTCGGTCCCAACGTTTGACATCTCTTCAACCTGATG GAAATGCTCATTTTCGGAGATCGAGGGTTGTGGTGAGTATGGGCAAAGGC CGTAAAGCAGAGAAGAAACGTAAATCGGCACCTCCTGCACGCCGGGAGGT CGCCAGCCCCAAAGCTGCACCCGGAAGTCAAACTCAGGACAAAGAGCCTG AGTCCTTCGGCATCCTTGGATCTGATGGTGGAATGGGTCCAATTAATAGT CAAGTAGGCGTGGGCTTTGGGACCCCAAAGGCCTCTTCGCCTGGGAAGCT CTCGCCCGTCGACGTCGACGACGCCTACGAACGGGCTCTCAGCAAGGTCA AAGGCCAGGACCGTTTGTCTTCTTCTCCATTAAGAGGTGGGGGGGGTGTC TCTAAAGGTCTAGGGGAGCCTTCCGCTGATGGAAAGGTGCCGGTGCGCAA CATCGGGCTCTTGGACGTGATACCTGAGTCAGTGCAAAGCAGTCTCGAGC TGGTTCTTATCGGACTTCTGGCCTTGAATTTGGTAGTCATCATTGGCATT GGAACTGGATTCGCGGTACAAGCACTACCCACTTCGAACCTTGAGTTGCC GGAGAGCCTTGTGGCATTGTCCAAGAAGGTGGAGCCGCTCATCGAAAAAT CTGAGTTTTACTTTACGCCCAGCTTGGGAGTGTTCTTCCTGCTTTCCACG CTTCTGGGGTCGTTCAAAATTTCGCAGCTGTCTCGCGGGGGCACAACCTA TGTTGAGAAGAAGGATTTGAAGATAAGAAAATAGGCAACAGCACGACAAA TGATTCTCTTTGTCGGGACCGTCGGCCTACAGGAGCTGTCTCGGCTTCTG CGATGGATTGGCTCCCTGTCTTCCATCCGTGTATTCCATCTGTTTTCCTC TATCCTTTTGTACAGCTTGCGCTAGAAAATGTCGCGCCTGACACAGATGG CGCATAAGTGCGCCGACAAGGCCGCCCGAAAGGACGAAGATATCGATCGA GTCAAGAAACGCTATCAAAGCCTGGATCCCTCTTTTACTTTCTCGTGTCT TTCTTCTTTATTTCTGGACCAAGGATAAAAGCTCTAAAAGATATAGTTAA GGAGTCGAG
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Coding sequence (CDS) from alignment at CM002459.1:676852..678210-

>rna2563 ID=rna2563|Name=rna2563|organism=Nannochloropsis gaditana|type=CDS|length=852bp|location=Sequence derived from alignment at CM002459.1:676852..678210- (Nannochloropsis gaditana)
ATGAATAACTACCTCCTGCCCCTGGTCCTGGCCTTCCTCTGCCACTATAG
CTTCGCCTTCATCAAGCCCTTCGCACCGAAAATTCGGTCCCAACGTTTGA
CATCTCTTCAACCTGATGGAAATGCTCATTTTCGGAGATCGAGGGTTGTG
GTGAGTATGGGCAAAGGCCGTAAAGCAGAGAAGAAACGTAAATCGGCACC
TCCTGCACGCCGGGAGGTCGCCAGCCCCAAAGCTGCACCCGGAAGTCAAA
CTCAGGACAAAGAGCCTGAGTCCTTCGGCATCCTTGGATCTGATGGTGGA
ATGGGTCCAATTAATAGTCAAGTAGGCGTGGGCTTTGGGACCCCAAAGGC
CTCTTCGCCTGGGAAGCTCTCGCCCGTCGACGTCGACGACGCCTACGAAC
GGGCTCTCAGCAAGGTCAAAGGCCAGGACCGTTTGTCTTCTTCTCCATTA
AGAGGTGGGGGGGGTGTCTCTAAAGGTCTAGGGGAGCCTTCCGCTGATGG
AAAGGTGCCGGTGCGCAACATCGGGCTCTTGGACGTGATACCTGAGTCAG
TGCAAAGCAGTCTCGAGCTGGTTCTTATCGGACTTCTGGCCTTGAATTTG
GTAGTCATCATTGGCATTGGAACTGGATTCGCGGTACAAGCACTACCCAC
TTCGAACCTTGAGTTGCCGGAGAGCCTTGTGGCATTGTCCAAGAAGGTGG
AGCCGCTCATCGAAAAATCTGAGTTTTACTTTACGCCCAGCTTGGGAGTG
TTCTTCCTGCTTTCCACGCTTCTGGGGTCGTTCAAAATTTCGCAGCTGTC
TCGCGGGGGCACAACCTATGTTGAGAAGAAGGATTTGAAGATAAGAAAAT
AG
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Synonyms
Publications