rna2556, rna2556 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2556
Unique Name	rna2556
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2352
Alignment location	CM002459.1:659732..662197 -

Link to JBrowse

Properties


Property Name	Value
Product	heat shock protein 90
Orig transcript id	gnl\|cribi\|Naga_100036g29.2520.mrna
Orig protein id	gnl\|cribi\|Naga_100036g29.2520
Gene	HSP1
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:659732..662197 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
HSP1	gene2443	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28100.1	cds2548	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2556	rna2556-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:659732..662197-
coding sequence from alignment at CM002459.1:659732..662197-

mRNA sequence

>rna2556 ID=rna2556|Name=rna2556|organism=Nannochloropsis gaditana|type=mRNA|length=2352bp
TGCGATAATTCAGCTTGCACTATCTCCTTATTTTCTGTTGCTGCTCGTGA
GAGATCATCTCTCTAGGATGCTCCTCGTCGCCGTTCAACTCCCATACGTC
TATGTTGATGACGAAAATGCTTGCATGCGTTCAGCAAAGTAGTCTTTGTT
TCTTGCCAAAATACGTGCGGAGTTCATTGATTATTTTCATTTATGCATTC
ATAATGTGCTTTTTTAACCCCCCCATGCCCAAGTGGAGGCAACATTAGCC
AGGGCCGCCCGTTCCTGTCAAGGAGAGTATCTTGTCTGATACAATCCCGC
ACGCACACTCCTCTAACGTACACACGACGCACAGACATCAACTCACCAGG
AGATAAACGAAATTCAATTAAAGTTTTCAGACAGGTCTCATAGAGGACCG
GAACAAACTTTGCGTGGTACGACGCCGTAAGTAATTAGAGTAGGAATGCT
GCCAGGTGGGGGATGGCGGAGGGTGGCACAACTTCCAGCCACAATGCTAC
TGCAACGAGCAGCCGCAAGCAGTAGTGGGGCGTCAGTTGTCAGCAGTGCC
AATAGTATGACTGATGAATTTCCTGACCATACTGATTACTTGGCACGCAT
TTTGAATGCCCGCGTGTATGAGCTTGCCATCGAGACACCCCTGCAGCCAG
CTCCATGCATGTCCAAGACCATCCACAACAATGTATTATTTAAGAGGGAA
GATTTACAGCCAGTTTTCTCTTTCAAACTGCGCGGCGCGTACAACAAAAT
CGTAAGCACGCCCGCTGCAGACCTTGAACGAGGCGTCGTAGCATGTTCGG
CAGGAAATCACGCTCAAGGCGTTGCTCTTTCGGCCTCACGAAAGAACATC
AAGGCCGTGATAGTGATGCCTCTTGCCACTCCTCAAATCAAAGTGAACGC
GGTGAAGCGCTTCGGAGGCCCCACAGTGGTCGTGAAGCTGCATGGGAAAA
ACTACGACGAGGCATCAGAGGAAGCGCAGCGCCTGTCGCGGGAGGAGGGT
CTGACAATGATTCATCCCTTCGACGATCCGGATGTGATCGCGGGCCAGGG
CACCATTGGCATGGAGATCTTGAAGGCCACAAACGGACAGCCTTTGGACG
CTATATTTGTCTGTGTTGGGGGTGGTGGTCTGTTATCAGGGGTGGCTGCC
TATGTGAAAGCGGTGCGGCCGTCCGTAAAGGTGATCGGCGTCGAGGCGGA
GGACGCGGCGGGTATGACAACGTCCTTGCAGGCGGGGCATGTGGTAGCAC
TTGATCGCGTGGGCCTTTTTGCTGACGGGGCAGCCGTCCGAGTCGTGGGT
AGAGAGACGTTCCGACTGTGCAGCCATCTGGTGGACGAGATGGTGACGGT
CACAACGGATGAGATCTGCGCCGCTATCAAGGCCGGCTTCCAGGACACGC
GGTCAGTCATGGAGCCCGCAGGCGCCTTGGCCATTGCTGGAGCCCAGAAG
TATTGCGCGGCACAGCAATGGAGGGGTAAGACTGTCGTAGCCATTGCGTC
GGGGGCGAACATGGACTTCGACCGATTGCGCTTCGTGAGTGAGCGATCGG
ACTCGACCGAGACTCTCCTTTCCGTCAGGATCAACGAGCGACCTGGCAGC
TTCCGCCAGCTTTATTCTGGCATTTTCCCGCGTAATGTTACTGAGTTCTC
GTACAGGTTCAACAGCCCTGACACAGCGGATGTGATCATCAGCTTCCAGT
GCATGGCAGGCGCTAGTCGTGAGGAGGATAAGCAGCAAGTCCTGGAGAAC
ATTCGAAATCTAGACTTCGAGGTTGTGGATCTGAGCGGGAATGAGATGGC
GAAGGCTCATGCTCGATATTTGGCCGGTGGGCGTGCACCGCACGTGAAAC
ATGAGCAGCTATATCGCTTTGAGTTTCCCGAGCGGCCGGGTGCTCTCCAT
GCGTTTCTGACCGATTTGAATAAAGGGTGGAATGTCAGCCTCTTCCATTA
TCGTAATCAGGGCGGAGACATCGGAAGGGTGCTGGTCGGATTACAAGTTC
CCCCCAAGGAGGTTGGGCAGTTTCATGATTGGCTCACAACACTTCCCCAA
TTGGGCTACGTATGGTACGCCGAAACCAAAAATCCTGTTTATTTCCAGTT
CTTGTACTAAAGGGATCGCAACTGAGGTGAACTTCTCCCTGTGCGTGTAT
TACAAATTACCTGAAGAAATGCAAACTGTAGTGGGTGACTGGAACAGACG
CTCTGTTTGAAAGAGGGCTTAACAAAAAAATCGAGATTATCAAATAAATA
CTTTGGGGTCAAGCATTGCCTCGCCTTTCGGCGCAAACCGCCATCAAGTT
TGTTTGATCGTCGTCTATCTTGCATGTCGAAGTTGATAAAGAAAGGGAAG
CC

protein sequence of rna2556

>rna2556-protein ID=rna2556-protein|Name=rna2556|organism=Nannochloropsis gaditana|type=polypeptide|length=821bp
MHAYLTATSPVLWKSCAVLTEHLSMIMRRGSSVLFATAALTLLGAMLRVE
GFIPHAGKGSVSRPKLQQQLQARPQSETLLRTPVSPLSMSASTAEAPVKA
EGETFEFQAEVARVMDIIINSLYSDRDVFLRELVSNAADACDKKRFLSIT
ADGEAAAAGEFGIRIKPDREARTLTIEDSGIGMTKTELVENLGRIAQSGT
KKFAEALAKGDADLNLIGQFGVGFYSGFLAADKMTVVTKPSQGEDKRQYR
WESSAGSSFTVAEDVDGDAVEGSGTRITLHLKEDCEEYLDTVKLKTLLQR
YSEFVQFPIELWTEKTEYDQVPDDTAPPPAEGEKPKMKTVSKKTNVWERV
NQTKPIWLRPPRQVTPEEYKEFYRTTFRMFDEPLNYTHFSLEGQVEFKAV
LYVPSVLPYELMRSMFDENSRAIKLYVKRVFINDKFEELLPRYLTFLRGV
VDSEDLPLNVGREILQKSKMLNVINKRLVRKSLDMFKEIEKNATAYTTFW
NGFGRYLKVGLIEDNDNRQELAKLSRWSTTETGDGVTSFDEYVARMKPAQ
KQIYYVTGETKKRALASPALEKLRKKGYEVIILQDPLDEMAMQSLGKYAD
KDIVDAAKEQQAETDEEKAFLEEKGQETQALRDWYRKLLGKRVTKVEVTN
RLVDSPAALVQSAYGMSPQMQKYYRAQSVMQGEDDGSGLDSQFNQAILEL
NPTHPIVVSLREKVSASPEAVETMELGRLVYDVAAVAGGYDVEDPGAFTA
RITKLMSRQVLADGGEGLIAEGLSTRDMEDPTKVEADVVGAGGLGDLPEG
LNLDELQKELKEASDVVDESS

mRNA from alignment at CM002459.1:659732..662197-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2556 ID=rna2556|Name=rna2556|organism=Nannochloropsis gaditana|type=mRNA|length=2466bp|location=Sequence derived from alignment at CM002459.1:659732..662197- (Nannochloropsis gaditana)
ATGCACGCATATCTCACCGCCACCTCCCCGGTCCTTTGGAAATCTTGTGC
CGTGCTGACAGAGCATTTGAGCATGATTATGCGACGGGGCAGCAGCGTGC
TGTTTGCAACAGCTGCGTTGACACTCTTGGGGGCGATGCTACGCGTTGAA
GGGTTCATCCCGCATGCGGGGAAGGGGTCTGTTTCTCGCCCTAAGTTGCA
GCAGCAGCTGCAGGCACGACCTCAGTCCGAGACTCTCTTACGGACGCCTG
TGAGCCCTTTGTCGATGAGTGCATCGACCGCAGAAGCACCGGTCAAAGCG
GAAGGCGAGACATTCGAATTCCAGGCAGAGGTGGCGCGTGTAATGGACAT
AATTATCAACTCTTTGTACTCTGATCGCGACGTCTTCTTGAGGGAGCTTG
TCTCGAACGCTGCGGATGCCTGTGACAAAAAGCGCTTCTTGTCAATCACC
GCGGACGGGGAAGCAGCGGCCGCGGGTGAATTTGGCATCCGCATCAAACC
CGACCGGGAAGCGCGCACACTGACAATTGAGGACTCTGGTATCGGCATGA
CCAAGACGGAGCTGGTGGAGAATTTGGGGCGCATCGCGCAGTCCGGTACC
AAGAAGTTTGCCGAGGCGCTGGCTAAGGGGGACGCAGATCTAAATCTGAT
CGGTCAGTTTGGAGTGGGCTTCTACTCAGGCTTTCTGGCCGCAGACAAGA
TGACGGTGGTGACGAAGCCGTCGCAGGGCGAGGACAAGCGTCAGTACAGG
TGGGAGTCCTCGGCCGGGTCCTCCTTCACCGTGGCGGAGGATGTAGACGG
CGACGCTGTCGAGGGATCGGGCACCCGCATCACGCTGCACCTGAAGGAGG
ACTGCGAGGAGTATCTGGACACGGTGAAGCTTAAGACTCTGCTTCAGCGG
TACAGCGAGTTCGTGCAATTTCCCATCGAGCTCTGGACTGAGAAAACGGA
GTACGACCAGGTCCCCGACGATACGGCCCCTCCTCCTGCTGAGGGGGAGA
AGCCGAAGATGAAGACGGTCTCCAAGAAGACGAATGTATGGGAGCGGGTC
AATCAGACCAAGCCGATCTGGCTGCGGCCGCCGCGCCAGGTGACACCGGA
GGAGTACAAAGAATTCTACCGCACCACCTTCCGCATGTTCGACGAGCCCT
TGAACTACACGCACTTTTCGCTGGAAGGCCAGGTCGAGTTCAAGGCCGTC
CTGTACGTTCCCTCGGTCCTCCCCTACGAGCTGATGCGGTCCATGTTCGA
CGAGAACTCGCGCGCCATCAAGCTCTATGTGAAGCGGGTCTTCATCAACG
ACAAGTTTGAGGAGCTTTTGCCTCGGTATCTGACTTTCCTCAGGGGGGTG
GTGGACTCGGAGGACTTGCCTCTGAACGTGGGCCGCGAGATTTTGCAGAA
GAGCAAAATGCTGAACGTGATCAACAAGCGGTTGGTGCGCAAATCCCTGG
ACATGTTCAAGGAGATTGAGAAGAACGCGACCGCGTACACCACTTTCTGG
AACGGTTTTGGGCGGTACCTGAAGGTGGGCCTGATCGAGGACAACGACAA
CCGACAGGAGCTGGCCAAGCTCTCCCGGTGGTCCACCACCGAGACGGGGG
ATGGCGTCACCTCCTTCGATGAGTACGTGGCGCGCATGAAGCCCGCGCAG
AAGCAGATCTATTACGTGACGGGAGAGACAAAGAAGCGGGCGTTGGCGTC
CCCGGCGCTAGAAAAGCTACGGAAGAAAGGGTACGAGGTGATCATTCTGC
AAGACCCTTTGGACGAGATGGCCATGCAGTCCTTGGGCAAGTATGCGGAC
AAGGACATCGTGGATGCGGCTAAGGAGCAGCAGGCGGAGACCGACGAGGA
GAAGGCCTTTCTGGAGGAGAAGGGGCAGGAGACGCAGGCCCTGCGGGACT
GGTACCGCAAGCTGCTGGGCAAGCGAGTCACGAAGGTGGAGGTGACGAAC
CGGCTGGTAGACTCGCCGGCGGCCTTGGTGCAGAGCGCCTACGGAATGTC
GCCACAGATGCAGAAGTACTACCGCGCACAGTCCGTCATGCAAGGCGAGG
ATGACGGCAGTGGCTTGGACTCGCAGTTCAACCAAGCCATTCTGGAGCTG
AACCCCACCCACCCCATCGTCGTGTCCCTTCGGGAGAAGGTGTCGGCGTC
GCCGGAGGCCGTGGAGACCATGGAGCTGGGTCGATTGGTCTATGACGTAG
CAGCTGTTGCAGGCGGGTACGACGTGGAAGACCCCGGTGCCTTTACAGCA
CGGATCACCAAGCTCATGTCTCGGCAGGTGCTGGCGGACGGCGGGGAGGG
ACTTATCGCGGAGGGGCTGTCCACGCGGGACATGGAGGACCCGACGAAGG
TGGAGGCCGATGTGGTGGGTGCTGGCGGCCTCGGCGACCTCCCGGAAGGG
TTGAATTTGGATGAGTTGCAGAAAGAGCTAAAGGAGGCTTCTGACGTTGT
TGATGAGTCGAGTTGA

Coding sequence (CDS) from alignment at CM002459.1:659732..662197-

>rna2556 ID=rna2556|Name=rna2556|organism=Nannochloropsis gaditana|type=CDS|length=2466bp|location=Sequence derived from alignment at CM002459.1:659732..662197- (Nannochloropsis gaditana)
ATGCACGCATATCTCACCGCCACCTCCCCGGTCCTTTGGAAATCTTGTGC
CGTGCTGACAGAGCATTTGAGCATGATTATGCGACGGGGCAGCAGCGTGC
TGTTTGCAACAGCTGCGTTGACACTCTTGGGGGCGATGCTACGCGTTGAA
GGGTTCATCCCGCATGCGGGGAAGGGGTCTGTTTCTCGCCCTAAGTTGCA
GCAGCAGCTGCAGGCACGACCTCAGTCCGAGACTCTCTTACGGACGCCTG
TGAGCCCTTTGTCGATGAGTGCATCGACCGCAGAAGCACCGGTCAAAGCG
GAAGGCGAGACATTCGAATTCCAGGCAGAGGTGGCGCGTGTAATGGACAT
AATTATCAACTCTTTGTACTCTGATCGCGACGTCTTCTTGAGGGAGCTTG
TCTCGAACGCTGCGGATGCCTGTGACAAAAAGCGCTTCTTGTCAATCACC
GCGGACGGGGAAGCAGCGGCCGCGGGTGAATTTGGCATCCGCATCAAACC
CGACCGGGAAGCGCGCACACTGACAATTGAGGACTCTGGTATCGGCATGA
CCAAGACGGAGCTGGTGGAGAATTTGGGGCGCATCGCGCAGTCCGGTACC
AAGAAGTTTGCCGAGGCGCTGGCTAAGGGGGACGCAGATCTAAATCTGAT
CGGTCAGTTTGGAGTGGGCTTCTACTCAGGCTTTCTGGCCGCAGACAAGA
TGACGGTGGTGACGAAGCCGTCGCAGGGCGAGGACAAGCGTCAGTACAGG
TGGGAGTCCTCGGCCGGGTCCTCCTTCACCGTGGCGGAGGATGTAGACGG
CGACGCTGTCGAGGGATCGGGCACCCGCATCACGCTGCACCTGAAGGAGG
ACTGCGAGGAGTATCTGGACACGGTGAAGCTTAAGACTCTGCTTCAGCGG
TACAGCGAGTTCGTGCAATTTCCCATCGAGCTCTGGACTGAGAAAACGGA
GTACGACCAGGTCCCCGACGATACGGCCCCTCCTCCTGCTGAGGGGGAGA
AGCCGAAGATGAAGACGGTCTCCAAGAAGACGAATGTATGGGAGCGGGTC
AATCAGACCAAGCCGATCTGGCTGCGGCCGCCGCGCCAGGTGACACCGGA
GGAGTACAAAGAATTCTACCGCACCACCTTCCGCATGTTCGACGAGCCCT
TGAACTACACGCACTTTTCGCTGGAAGGCCAGGTCGAGTTCAAGGCCGTC
CTGTACGTTCCCTCGGTCCTCCCCTACGAGCTGATGCGGTCCATGTTCGA
CGAGAACTCGCGCGCCATCAAGCTCTATGTGAAGCGGGTCTTCATCAACG
ACAAGTTTGAGGAGCTTTTGCCTCGGTATCTGACTTTCCTCAGGGGGGTG
GTGGACTCGGAGGACTTGCCTCTGAACGTGGGCCGCGAGATTTTGCAGAA
GAGCAAAATGCTGAACGTGATCAACAAGCGGTTGGTGCGCAAATCCCTGG
ACATGTTCAAGGAGATTGAGAAGAACGCGACCGCGTACACCACTTTCTGG
AACGGTTTTGGGCGGTACCTGAAGGTGGGCCTGATCGAGGACAACGACAA
CCGACAGGAGCTGGCCAAGCTCTCCCGGTGGTCCACCACCGAGACGGGGG
ATGGCGTCACCTCCTTCGATGAGTACGTGGCGCGCATGAAGCCCGCGCAG
AAGCAGATCTATTACGTGACGGGAGAGACAAAGAAGCGGGCGTTGGCGTC
CCCGGCGCTAGAAAAGCTACGGAAGAAAGGGTACGAGGTGATCATTCTGC
AAGACCCTTTGGACGAGATGGCCATGCAGTCCTTGGGCAAGTATGCGGAC
AAGGACATCGTGGATGCGGCTAAGGAGCAGCAGGCGGAGACCGACGAGGA
GAAGGCCTTTCTGGAGGAGAAGGGGCAGGAGACGCAGGCCCTGCGGGACT
GGTACCGCAAGCTGCTGGGCAAGCGAGTCACGAAGGTGGAGGTGACGAAC
CGGCTGGTAGACTCGCCGGCGGCCTTGGTGCAGAGCGCCTACGGAATGTC
GCCACAGATGCAGAAGTACTACCGCGCACAGTCCGTCATGCAAGGCGAGG
ATGACGGCAGTGGCTTGGACTCGCAGTTCAACCAAGCCATTCTGGAGCTG
AACCCCACCCACCCCATCGTCGTGTCCCTTCGGGAGAAGGTGTCGGCGTC
GCCGGAGGCCGTGGAGACCATGGAGCTGGGTCGATTGGTCTATGACGTAG
CAGCTGTTGCAGGCGGGTACGACGTGGAAGACCCCGGTGCCTTTACAGCA
CGGATCACCAAGCTCATGTCTCGGCAGGTGCTGGCGGACGGCGGGGAGGG
ACTTATCGCGGAGGGGCTGTCCACGCGGGACATGGAGGACCCGACGAAGG
TGGAGGCCGATGTGGTGGGTGCTGGCGGCCTCGGCGACCTCCCGGAAGGG
TTGAATTTGGATGAGTTGCAGAAAGAGCTAAAGGAGGCTTCTGACGTTGT
TGATGAGTCGAGTTGA

Synonyms

Publications