rna2548, rna2548 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2548
Unique Name	rna2548
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1589
Alignment location	CM002459.1:631794..633890 +

Link to JBrowse

Properties


Property Name	Value
Product	sec1-like family protein
Orig transcript id	gnl\|cribi\|Naga_100036g38.2528.mrna
Orig protein id	gnl\|cribi\|Naga_100036g38.2528
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:631794..633890 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g38	gene2435	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2548	rna2548-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28108.1	cds2540	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:631794..633890+
coding sequence from alignment at CM002459.1:631794..633890+

mRNA sequence

>rna2548 ID=rna2548|Name=rna2548|organism=Nannochloropsis gaditana|type=mRNA|length=1589bp
CGGATACAGCCAGAGCCCGCAGTCTGGCATCAGGGGCTGCACGCACGGCT
AGCACCTCACTCTTCTTTGCATATCATTTATATCACAGGAGCGATATATC
CGCAGATTCCTCTCTTCTAGCTTGGGTAGACGCCAGATTTCTTTTTGGAA
CAGACGTTTGTACTTTCCTCTACCAAGAACAAGAACGACTACGTCTTCAA
CATCAACTAATTCCGAACCTAGCACTATGACTTCCCGATCGTTTCCCATT
TTGCTTGTGCTTGTGACTATATCGGTAAGCTACGCTTTTATGCCGCAATT
GTCAACAATCCGGCCGCGCTTGACTCGCTGCGAGTCCTCCCTGCAAAATC
GACGGTCCTCTTCGCCCTCGCCTCGGAGGTCTGCAGCAGGAACGCTACTA
TCGAGCCCGAGGGTGCGCTTTGAAGGGTTTGAGGAGACTCGTGGACCCGC
GGTAGGAGACACTTTGTCAATCGTATACGATCCGGCTGGGGAGGGCGCGG
ATTCCCCCTTGACAATGCTGGAGGAGGACGAGGGAGCTAGCCCGTGCCTG
CTCTACAACTTCAATGGGTGGAACGGCGAGGAGACGCCGCTGCGGACGCC
CTTATTTCCTCAAGGCGACGGGACACTTATGGCCACCGTGCATGTACCGA
ACTATGCCAAGGTTCTAGACTGCATTGTATCGGACGGACAGCTTGCATTC
GACACCGAGGCTGGCCAATTTTTCCACTTGCGTATCGCCCACGTGCAAGA
AGAGAGGGATGGCACGGTCTACAACTTCTTCCAAGGAGAAGATGGCTCAA
TAACGTTGACAGGAGTTCAAGCCGACAATGACGCAAGAGAATTGGAACGC
ATGATTGAAGAGGAGCTGTCCGCACGGGAGACATCAAGCGCAGAAGGACA
GTTGTTTGATGAAGAGCCTGAAGAGAGACGCTTCAGTTCCTCAACGGTTG
CGGATTACGAGGAGAGCCATCTAAGTGACTTGGAGGGAGACTCGGAGGAG
GCAGGGGAGGGAAAGAGCCCCTTGTCGGAAGACGCGGACGCGGGTGGGGA
AGCGGCTCGGCAGCTGGCCTCGAGCGGCTCCCTGGGCGTGCACGTCGCGG
CCTTGGAGGATGTGGGGAATGTGCCACAGCAGCTTCGAGCTGAGGCCACG
GCTGTCGGAGAAGCCTTAGGCATTTCTTCCTCGATGATCATCAACGAGCT
GCGGGAGTCATTTGACTCGGTGACGGACGCGGACGTTCTCACCATCGGGG
AGCTGCCCAAGGCCCTGGCGAGGATGGGCTTTGACGGGCTGGAGGCGGCC
GAGCTGGAGGACTTATGCATGCGGGTGCAAGGTACGGAGGCCCCTGCCGC
GGGTCGGTGTCTGACGTTGGAGCACTTCATGCGGATCTTCCACCTCTTGG
ACACGGAGAACGTCGGCATCGTCATCGTGTGAGGATGGGCGATGATAGGT
GGGCCGCCGTCGAAGAGGCATGAATGTTGAACGGTATCTAGAATTAGTTC
GCGGAGAACGTAATGGACAATGGGTCTCGACCCAAAGTGTAGTAAATCTC
GGTAAAAATTAAACTCAAGAGGTAATGGCCTCCCGTCGC

protein sequence of rna2548

>rna2548-protein ID=rna2548-protein|Name=rna2548|organism=Nannochloropsis gaditana|type=polypeptide|length=619bp
MSSLSRRGAENSPPKNFREVVQRRLMQDVIEAAAGLSRGWMVMVIDDAAL
RVVSALVGMYDVMEHRVTLIELLSKDRQPLPEMDVIYLVTPTPDSVNLIL
KDFANPKKPRYGAVHLFFLSKVNDMLMQRLAAVPNFLQRVRTFKEINMNF
LATEAFSFHLDMPESLPGLFKARPDAAVQEEVVNKLVALCVALNEYPHVR
FNQKSVLGARLASLVQDGLNDFVAAQEDWWYHGQTGHTDRERATLLILDR
AEDPLTPLLHEHTFQPMVHEFLPVEDDMVTFQSEGKGGGHETKALLNESD
ALWVEFRHQHIAKVMEQIGERTKEYIHANAGAELTQKLGTDAKMSAQELG
LILKQLPEYREMTGKLWMYYSLTTDLMARFQREGILEISELEQTLATGVD
SDGRSVKEDKMLQSLESMLMGLESTGLSLENKMRLIAIFIIAQEGITEVD
RRQLVGAAGLTREDQDALIHLEALGVNVQKTKNHSSSLWGSKSTKAKRRT
DQASEYSASRYVCPLKDLIEQTVQGELSTEAYPSILPMPSQEGKPIARSL
RKHEKGRLGKQPATFSGGRSLVFVAGGVTYSELRAAYEVMEQHKKEVVIG
GTSYLTPNAYIKLLRAVKN

mRNA from alignment at CM002459.1:631794..633890+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2548 ID=rna2548|Name=rna2548|organism=Nannochloropsis gaditana|type=mRNA|length=2097bp|location=Sequence derived from alignment at CM002459.1:631794..633890+ (Nannochloropsis gaditana)
ATGTCTTCACTTagcaggaggggggcggagaacTCTCCGCCCAAAAACTT
CCGCGAGGTCGTACAGAGACGGTTGATGCAGGACGTGATTGAGGCGGCAG
CTGGACTTAGTCGAGGATGGATGGTTATGGTCATCGACGACGCGGCGCTG
CGAGTTGTCTCAGCGCTGGTGGGCATGTACGACGTAATGGAGCATCGGGT
AACGCTCATCGAGCTTCTTTCCAAAGACCGACAACCTTTACCAGAGATGG
ACGTCATCTATTTGGTAACGCCCACGCCAGACTCCGTAAATCTTATCCTC
AAGGATTTTGCCAACCCCAAGAAACCTCGGTACGGAGCCGtgcacctctt
cttcctctcaaAAGTTAACGACATGCTCATGCAGCGCCTTGCGGCCGTCC
CGAATTTCTTGCAGCGAGTTCGTACGTTCAAAGAAATCAACATGAACTTT
CTCGCCACAGAGGCCTTCTCTTTTCACCTGGATATGCCCGAGTCTTTGCC
TGGCCTCTTCAAGGCCCGTCCCGACGCTGCTgttcaggaggaggtggtga
acaAGCTGGTGGCCCTCTGCGTGGCACTGAACGAGTACCCTCACGTGCGC
TTCAATCAAAAAAGCGTGCTCGGCGCCCGTCtagcctccctcgtccagga
cGGGCTCAACGACTTCGTCGCGGCCCAGGAAGATTGGTGGTACCACGGCC
AGACCGGCCACACGGACCGCGAGCGAGCGACGCTCTTGATCTTAGACCGG
GCGGAGGATCCCTTGACGCCCCTGCTGCACGAGCACACCTTCCAGCCGAT
GGTACATGAGTTCTTGCCCGTAGAGGATGATATGGTGACGTTTCAgtcgg
aggggaaggggggggggcatgagACCAAGGCGTTACTGAACGAATCGGAC
GCTCTATGGGTAGAGTTCCGGCATCAGCACATCGCCAAAGTGATGGAACA
GATTGGAGAACGCACGAAAGAGTACATCCACGCCAATGCGGGGGCAGAAC
TCACTCAAAAGCTGGGCACGGACGCGAAAATGTCGGCGCAGGAGCTCGGT
CTCATTCTTAAGCAGCTGCCCGAGTACCGGGAGATGACTGGCAAGCTCTG
GATGTACTACTCCCTGACCACGGACCTCATGGCCCGCTTCCAACGCGAGG
GCATCCTTGAGATTTCCGAGTTGGAGCAGACGCTTGCAACGGGCGTGGAT
AGCGACGGACGCAGCGTCAAGGAGGATAAGATGCTACAAAGGTGAGGAGT
ACTCAGGGGGTTCGATATAGGAGGGTAGAATCAAGAGGCGAACAGGATCT
TTCACTGGGCCTTCATGTTTTGCTGGAATGCGACATTCCTGCACATTTAC
TGCTAATGATTTCATCGTCTATCGATGGAGAACGCATGACAGGCGCAAGA
GTATCCACTTTTGACATGTTCTTCATagtcttcctctctccttcccccct
cccccctcccttgtccctccTGTTTCAGCCTGGAGTCAATGCTGATGGGT
CTGGAGAGTACTGGTCTAAGCTTAGAAAACAAAATGCGGCTCATCGCCAT
CTTCATCATCGCGCAGGAGGGCATCACCGAGGTAGATCGCCGGCAGCTGG
TCGGGGCCGCCGGACTAACAagggaggaccaggacgCGCTCATACACCTA
GAGGCTCTAGGAGTCAATGTGCAAAAAACGAAGAACCACAGCTCATCGTT
GTGGGGAAGTAAGAGTACAAAGGCGAAGCGACGAACGGATCAGGCGTCAG
AGTACTCGGCCAGTCGGTACGTGTGCCCGCTCAAGGACCTCATCGAGCAG
ACAGTTCAAGGGGAACTCTCGACGGAGGCGTACCCTTCCATACTACCTAT
GCCTTCACAAGAAGGGAAGCCCATAGCTCGTTCCTTGCGCAAGCATGAAA
AGGGTCGATTAGGTAAGCAGCCCGCGACTTTTTCGGGGGGTCGGTCCCTG
GTCTTTGTCGCTGGAGGCGTGACGTACTCCGAGCTGCGAGCAGCTTACGA
GGTAATGGAGCAGCATAAAAAAGAGGTAGTTATCGGGGGCACATCATATT
TGACTCCCAATGCCTACATCAAGCTGCTCCGGGCCGTAAAGAATTAA

Coding sequence (CDS) from alignment at CM002459.1:631794..633890+

>rna2548 ID=rna2548|Name=rna2548|organism=Nannochloropsis gaditana|type=CDS|length=3720bp|location=Sequence derived from alignment at CM002459.1:631794..633890+ (Nannochloropsis gaditana)
ATGTCTTCACTTagcaggaggggggcggagaacTCTCCGCCCAAAAACTT
CCGCGAGGTCGTACAGAGACGGTTGATGCAGGACGTGATTGAGGCGGCAG
CTGGACTTAGTCGAGGATGGATGGTTATGGTCATCGACGACGCGGCGCTG
CGAGTTGTCTCAGCGCTGGTGGGCATGTACGACGTAATGGAGCATCGGGT
AACGCTCATCGAGCTTCTTTCCAAAGACCGACAACCTTTACCAGAGATGG
ACGTCATCTATTTGGTAACGCCCACGCCAGACTCCGTAAATCTTATCCTC
AAGGATTTTGCCAACCCCAAGAAACCTCGGTACGGAGCCGtgcacctctt
cttcctctcaaAAGTTAACGACATGCTCATGCAGCGCCTTGCGGCCGTCC
CGAATTTCTTGCAGCGAGTTCGTACGTTCAAAGAAATCAACATGAACTTT
CTCGCCACAGAGGCCTTCTCTTTTCACCTGGATATGCCCGAGTCTTTGCC
TGGCCTCTTCAAGGCCCGTCCCGACGCTGCTgttcaggaggaggtggtga
acaAGCTGGTGGCCCTCTGCGTGGCACTGAACGAGTACCCTCACGTGCGC
TTCAATCAAAAAAGCGTGCTCGGCGCCCGTCtagcctccctcgtccagga
cGGGCTCAACGACTTCGTCGCGGCCCAGGAAGATTGGTGGTACCACGGCC
AGACCGGCCACACGGACCGCGAGCGAGCGACGCTCTTGATCTTAGACCGG
GCGGAGGATCCCTTGACGCCCCTGCTGCACGAGCACACCTTCCAGCCGAT
GGTACATGAGTTCTTGCCCGTAGAGGATGATATGGTGACGTTTCAgtcgg
aggggaaggggggggggcatgagACCAAGGCGTTACTGAACGAATCGGAC
GCTCTATGGGTAGAGTTCCGGCATCAGCACATCGCCAAAGTGATGGAACA
GATTGGAGAACGCACGAAAGAGTACATCCACGCCAATGCGGGGGCAGAAC
TCACTCAAAAGCTGGGCACGGACGCGAAAATGTCGGCGCAGGAGCTCGGT
CTCATTCTTAAGCAGCTGCCCGAGTACCGGGAGATGACTGGCAAGCTCTG
GATGTACTACTCCCTGACCACGGACCTCATGGCCCGCTTCCAACGCGAGG
GCATCCTTGAGATTTCCGAGTTGGAGCAGACGCTTGCAACGGGCGTGGAT
AGCGACGGACGCAGCGTCAAGGAGGATAAGATGCTACAAAGCCTGGAGTC
AATGCTGATGGGTCTGGAGAGTACTGGTCTAAGCTTAGAAAACAAAATGC
GGCTCATCGCCATCTTCATCATCGCGCAGGAGGGCATCACCGAGGTAGAT
CGCCGGCAGCTGGTCGGGGCCGCCGGACTAACAagggaggaccaggacgC
GCTCATACACCTAGAGGCTCTAGGAGTCAATGTGCAAAAAACGAAGAACC
ACAGCTCATCGTTGTGGGGAAGTAAGAGTACAAAGGCGAAGCGACGAACG
GATCAGGCGTCAGAGTACTCGGCCAGTCGGTACGTGTGCCCGCTCAAGGA
CCTCATCGAGCAGACAGTTCAAGGGGAACTCTCGACGGAGGCGTACCCTT
CCATACTACCTATGCCTTCACAAGAAGGGAAGCCCATAGCTCGTTCCTTG
CGCAAGCATGAAAAGGGTCGATTAGGTAAGCAGCCCGCGACTTTTTCGGG
GGGTCGGTCCCTGGTCTTTGTCGCTGGAGGCGTGACGTACTCCGAGCTGC
GAGCAGCTTACGAGGTAATGGAGCAGCATAAAAAAGAGGTAGTTATCGGG
GGCACATCATATTTGACTCCCAATGCCTACATCAAGCTGCTCCGGGCCGT
AAAGAATTAAATGTCTTCACTTagcaggaggggggcggagaacTCTCCGC
CCAAAAACTTCCGCGAGGTCGTACAGAGACGGTTGATGCAGGACGTGATT
GAGGCGGCAGCTGGACTTAGTCGAGGATGGATGGTTATGGTCATCGACGA
CGCGGCGCTGCGAGTTGTCTCAGCGCTGGTGGGCATGTACGACGTAATGG
AGCATCGGGTAACGCTCATCGAGCTTCTTTCCAAAGACCGACAACCTTTA
CCAGAGATGGACGTCATCTATTTGGTAACGCCCACGCCAGACTCCGTAAA
TCTTATCCTCAAGGATTTTGCCAACCCCAAGAAACCTCGGTACGGAGCCG
tgcacctcttcttcctctcaaAAGTTAACGACATGCTCATGCAGCGCCTT
GCGGCCGTCCCGAATTTCTTGCAGCGAGTTCGTACGTTCAAAGAAATCAA
CATGAACTTTCTCGCCACAGAGGCCTTCTCTTTTCACCTGGATATGCCCG
AGTCTTTGCCTGGCCTCTTCAAGGCCCGTCCCGACGCTGCTgttcaggag
gaggtggtgaacaAGCTGGTGGCCCTCTGCGTGGCACTGAACGAGTACCC
TCACGTGCGCTTCAATCAAAAAAGCGTGCTCGGCGCCCGTCtagcctccc
tcgtccaggacGGGCTCAACGACTTCGTCGCGGCCCAGGAAGATTGGTGG
TACCACGGCCAGACCGGCCACACGGACCGCGAGCGAGCGACGCTCTTGAT
CTTAGACCGGGCGGAGGATCCCTTGACGCCCCTGCTGCACGAGCACACCT
TCCAGCCGATGGTACATGAGTTCTTGCCCGTAGAGGATGATATGGTGACG
TTTCAgtcggaggggaaggggggggggcatgagACCAAGGCGTTACTGAA
CGAATCGGACGCTCTATGGGTAGAGTTCCGGCATCAGCACATCGCCAAAG
TGATGGAACAGATTGGAGAACGCACGAAAGAGTACATCCACGCCAATGCG
GGGGCAGAACTCACTCAAAAGCTGGGCACGGACGCGAAAATGTCGGCGCA
GGAGCTCGGTCTCATTCTTAAGCAGCTGCCCGAGTACCGGGAGATGACTG
GCAAGCTCTGGATGTACTACTCCCTGACCACGGACCTCATGGCCCGCTTC
CAACGCGAGGGCATCCTTGAGATTTCCGAGTTGGAGCAGACGCTTGCAAC
GGGCGTGGATAGCGACGGACGCAGCGTCAAGGAGGATAAGATGCTACAAA
GCCTGGAGTCAATGCTGATGGGTCTGGAGAGTACTGGTCTAAGCTTAGAA
AACAAAATGCGGCTCATCGCCATCTTCATCATCGCGCAGGAGGGCATCAC
CGAGGTAGATCGCCGGCAGCTGGTCGGGGCCGCCGGACTAACAagggagg
accaggacgCGCTCATACACCTAGAGGCTCTAGGAGTCAATGTGCAAAAA
ACGAAGAACCACAGCTCATCGTTGTGGGGAAGTAAGAGTACAAAGGCGAA
GCGACGAACGGATCAGGCGTCAGAGTACTCGGCCAGTCGGTACGTGTGCC
CGCTCAAGGACCTCATCGAGCAGACAGTTCAAGGGGAACTCTCGACGGAG
GCGTACCCTTCCATACTACCTATGCCTTCACAAGAAGGGAAGCCCATAGC
TCGTTCCTTGCGCAAGCATGAAAAGGGTCGATTAGGTAAGCAGCCCGCGA
CTTTTTCGGGGGGTCGGTCCCTGGTCTTTGTCGCTGGAGGCGTGACGTAC
TCCGAGCTGCGAGCAGCTTACGAGGTAATGGAGCAGCATAAAAAAGAGGT
AGTTATCGGGGGCACATCATATTTGACTCCCAATGCCTACATCAAGCTGC
TCCGGGCCGTAAAGAATTAA

Synonyms

Publications