rna2541, rna2541 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2541
Unique Name	rna2541
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1415
Alignment location	CM002459.1:618181..619598 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100036g44.2561.mrna
Orig protein id	gnl\|cribi\|Naga_100036g44.2561
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:618181..619598 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100036g44	gene2429	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2541	rna2541-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28141.1	cds2533	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:618181..619598+
coding sequence from alignment at CM002459.1:618181..619598+

mRNA sequence

>rna2541 ID=rna2541|Name=rna2541|organism=Nannochloropsis gaditana|type=mRNA|length=1415bp
AATAGAAGTCAGAGTTGCTGTTCAAGGCACCCACCTCTTCGCTCGCTCAA
TTCCTGAAACAAGAGGCGACATTCAGGTCACACTGACAGTTCGCACCCTA
CACCTGATAATCTAGTGATGAGCCGGTCGAGCAAATTGAGCAGAGGGGCA
ACAAGATGACTCCACTCCTCCTTTTCCTTCTGTGCATCACCCCGGCCTCG
GGTTTCGGGGCGCCTCGGGCCCCTCTCATCAGTGGTCAAGAGTCAACCTC
CCGCCTCTTCGTCTTCGGACTCGGTTATGTGGGCGCACGCCTGGCTCGAG
AAATGGATGAAAGCCCAGGCTGGGCTGTTGCTGGCACTGTGATCTCACTA
TCCTTAGCTTCGTCCATCCCGCCCTCGGTGCGGGTGTTTGAGTTTGACGC
CTGTCCTGCCGCTCCCAAGCTGCTCGATCCCCAGGGCTTGTGCTTCTTGC
GACGAGCAACGCACGTCCTGATAAGTATCCCCCCTATGGACGGCTATGAC
CCTGTTGTGGATTTGTATCGATCTGAGCTGCTTAAAAATTGTGCTTGCTT
GAGGTGGCTGGGCTATTTGAGCTCTACAAGTGTCTATGGAGACCGACAGG
GGGCGTGGGTTACAGAGGACGATGAGGTGCGACCCGTTACGTCCAAGGCT
CTTGCACGGGTTCGAGCGGAGCAAGCATGGATGGAGCTCAGGCAATGTAT
GCCAGATCGACCTTTGTTGTGCCGTGTTTTCCGGCTTGCTGGGATTTATG
GCCCCGACAGGAACGCTCTGACCACGCTGCGAAAAGGAATGTCAGGCGCC
CAAGGCGGGGGCTCTTTGCCGCGTCTGGACGGTGACAGTTTCGTCAGTCG
CATCCACGTGGAGGACATTATACGCATTCTGAGGTGCTCTATGGACGAGA
CAGTAGAAACTGGAACGGAAGTCGAGATATACAACGTGGCAGACAACCGT
CCCGCCTCGCGCCTTGAAGTCTTCTCCTTCGCTGCAAGGTTGCTTGGCGA
TGAATCCATTCTTTCAAATTATCACCATGCGCCCTCTGCTTCGACGAATG
CACATCACTTTCCCTCAACCTCGCCGCGTGCCCTCTCCCGCCGCGCTCGT
CGTCCCGAGAGCAAACGTGTGAGTAACAAGAAGATGAGAAAGCTTCTTTC
CGAGAGCAAGGCCGCCTTGGCCTCTTTAAATCTACGCCATCCCACATTCA
TAGAAGGGCTTTGTAGTATTTTGAAGGATGAGAAAGCAGACATTGAGCAA
AAAAATCTTGAAAACAACTCCTGATGCTCAGCAACGTACACGCCTTTTCT
CTGGACGGCACACCCTGTTCGACTGTCCGTCTATTAATACTTGCGGGGTA
TCTTTAGTTGCTTGGTTGTCTTTTCTGCGAAGTAATAAGCAATGAATGAA
AAGATAGCATTTTGC

protein sequence of rna2541

>rna2541-protein ID=rna2541-protein|Name=rna2541|organism=Nannochloropsis gaditana|type=polypeptide|length=399bp
MSDAAARRRTRILSGSKDRMKLVSGSSIQDKSEVDAPPEAAYDLASGGKE
EAEDSNVSEVGTSKEAGIRARNRRRLQARNIKIETVPTEADHLNAGQSDM
PPGTNDTPLGGSEKRSSSPSLLPYEGFSHSASNTGALTTGGNVLRKRFQA
SRYGDRGATATDANAGVSSRPENPTSPAPSLLQALTASDVLLRLWPLCAA
GLLFGVWVAGLNATVLARVRGSTGMESPAHHQARDALDEFVANVGAISPP
NIGGDKDYLGLWDRDRIGANVLRRIRNLFLPEVFDSFPLPLIALILHGVL
IFSLGMLRVTSRKGTAGDNIKDWASTVPLEGEGGGESGREGETGAKASLD
QVSDRSMLASLAHTFGLGPALEALKVLQAAWQDMLIFSFFFLLALALCA

mRNA from alignment at CM002459.1:618181..619598+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2541 ID=rna2541|Name=rna2541|organism=Nannochloropsis gaditana|type=mRNA|length=1418bp|location=Sequence derived from alignment at CM002459.1:618181..619598+ (Nannochloropsis gaditana)
ATGAGTGATGCTGCAGCGCGTCGCCGGACGAGGATACTGTCTGGCAGCAA
GGACCGGATGAAGCTTGTCTCCGGGTCTTCAATCCAGGCAAGTTAAAGAG
GGTGGCGAGCTGGAACCCCCTGAACAGGTTCGAGCCTCGCTTAACATGCC
ATACCTCTCAACACCTACAGGACAAAAGCGAAGTCGATGCACCTCCCGAG
GCCGCATATGATTTGGCAtcgggtgggaaggaggaggcagaggactCTAA
TGTTTCTGAGGTTGGGACcagcaaggaggcagggatcCGCGCCCGCAATC
GACGACGGCTGCAGGCTCGCAACATCAAGATTGAGACAGTGCCAACTGAG
GCGGATCATTTGAATGCCGGCCAATCCGATATGCCGCCTGGCACCAACGA
CACCCCCCTGGGGGGCTCGGAGAAGCGCTCCTCGAGCCCCTCTTTGTTGC
CTTACGAGGGATTTTCGCACTCGGCCTCTAATACCGGCGCCTTGACCACC
GGGGGAAATGTTTTGCGCAAACGCTTCCAAGCGTCTCGGTATGGGGACCG
AGGAGCGACTGCGACCGACGCAAATGCCGGTAAGTCTTGTCTGGTGGGTT
GTATTTGGCGAGCCGTGCCGCTTCTTTCAATTTTTGGGCTGAGCGCGTAA
GGAATGAAAACGGTCGCCTCCGAGCGTTCTCATTTCGTATTTTCACCCAA
TTCTTGCACTTCAGGAGTCTCATCTCGTCCGGAGAACCCTACATCGCCCG
CGCcgagcctcctccaggctctaACAGCCTCCGacgtccttctccgcctc
tggCCTCTGTGTGCGGCCGGCCTTCTCTTCGGTGTGTGGGTGGCCGGGCT
GAACGCGACTGTCTTGGCCAGGGTGAGGGGCAGCACGGGCATGGAGTCGC
CCGCACACCATCAGGCACGGGACGCGCTCGATGAATTCGTAGCCAATGTA
GGGGCGATTTCTCCTCCAAATATAGGCGGCGACAAAGATTATCTGGGACT
TTGGGACAGGGACAGGATAGGAGCCAATGTGCTGAGGCGGATCCGGAATC
TCTTTTTGCCCGAAGTATTCGATTCCTTCCCTTTACCCTTAATAGCTCTT
ATCTTGCACGGAGTGTTGATATTTTCGCTGGGAATGTTGCGTGTAACGAG
TAGAAAGGGGACTGCTGGCGACAATATCAAAGATTGGGCTTCGACGGTGC
CTTtggaaggcgaaggcgggggcgagagTGGACGCGAGGGCGAGACCGGC
GCGAAAGCCAGCCTAGATCAGGTGTCTGATCGATCAATGCTGGCAAGTCT
AGCGCACACGTTTGGCTTGGGCCCTGCcttggaggccttgaaggtGCTGC
AGGCGGCATGGCAGGACATGCTCATTTTtagcttctttttccttctcgct
cTCGCCTTGTGCGCCTAG

Coding sequence (CDS) from alignment at CM002459.1:618181..619598+

>rna2541 ID=rna2541|Name=rna2541|organism=Nannochloropsis gaditana|type=CDS|length=3600bp|location=Sequence derived from alignment at CM002459.1:618181..619598+ (Nannochloropsis gaditana)
ATGAGTGATGCTGCAGCGCGTCGCCGGACGAGGATACTGTCTGGCAGCAA
GGACCGGATGAAGCTTGTCTCCGGGTCTTCAATCCAGGACAAAAGCGAAG
TCGATGCACCTCCCGAGGCCGCATATGATTTGGCAtcgggtgggaaggag
gaggcagaggactCTAATGTTTCTGAGGTTGGGACcagcaaggaggcagg
gatcCGCGCCCGCAATCGACGACGGCTGCAGGCTCGCAACATCAAGATTG
AGACAGTGCCAACTGAGGCGGATCATTTGAATGCCGGCCAATCCGATATG
CCGCCTGGCACCAACGACACCCCCCTGGGGGGCTCGGAGAAGCGCTCCTC
GAGCCCCTCTTTGTTGCCTTACGAGGGATTTTCGCACTCGGCCTCTAATA
CCGGCGCCTTGACCACCGGGGGAAATGTTTTGCGCAAACGCTTCCAAGCG
TCTCGGTATGGGGACCGAGGAGCGACTGCGACCGACGCAAATGCCGGAGT
CTCATCTCGTCCGGAGAACCCTACATCGCCCGCGCcgagcctcctccagg
ctctaACAGCCTCCGacgtccttctccgcctctggCCTCTGTGTGCGGCC
GGCCTTCTCTTCGGTGTGTGGGTGGCCGGGCTGAACGCGACTGTCTTGGC
CAGGGTGAGGGGCAGCACGGGCATGGAGTCGCCCGCACACCATCAGGCAC
GGGACGCGCTCGATGAATTCGTAGCCAATGTAGGGGCGATTTCTCCTCCA
AATATAGGCGGCGACAAAGATTATCTGGGACTTTGGGACAGGGACAGGAT
AGGAGCCAATGTGCTGAGGCGGATCCGGAATCTCTTTTTGCCCGAAGTAT
TCGATTCCTTCCCTTTACCCTTAATAGCTCTTATCTTGCACGGAGTGTTG
ATATTTTCGCTGGGAATGTTGCGTGTAACGAGTAGAAAGGGGACTGCTGG
CGACAATATCAAAGATTGGGCTTCGACGGTGCCTTtggaaggcgaaggcg
ggggcgagagTGGACGCGAGGGCGAGACCGGCGCGAAAGCCAGCCTAGAT
CAGGTGTCTGATCGATCAATGCTGGCAAGTCTAGCGCACACGTTTGGCTT
GGGCCCTGCcttggaggccttgaaggtGCTGCAGGCGGCATGGCAGGACA
TGCTCATTTTtagcttctttttccttctcgctcTCGCCTTGTGCGCCTAG
ATGAGTGATGCTGCAGCGCGTCGCCGGACGAGGATACTGTCTGGCAGCAA
GGACCGGATGAAGCTTGTCTCCGGGTCTTCAATCCAGGACAAAAGCGAAG
TCGATGCACCTCCCGAGGCCGCATATGATTTGGCAtcgggtgggaaggag
gaggcagaggactCTAATGTTTCTGAGGTTGGGACcagcaaggaggcagg
gatcCGCGCCCGCAATCGACGACGGCTGCAGGCTCGCAACATCAAGATTG
AGACAGTGCCAACTGAGGCGGATCATTTGAATGCCGGCCAATCCGATATG
CCGCCTGGCACCAACGACACCCCCCTGGGGGGCTCGGAGAAGCGCTCCTC
GAGCCCCTCTTTGTTGCCTTACGAGGGATTTTCGCACTCGGCCTCTAATA
CCGGCGCCTTGACCACCGGGGGAAATGTTTTGCGCAAACGCTTCCAAGCG
TCTCGGTATGGGGACCGAGGAGCGACTGCGACCGACGCAAATGCCGGAGT
CTCATCTCGTCCGGAGAACCCTACATCGCCCGCGCcgagcctcctccagg
ctctaACAGCCTCCGacgtccttctccgcctctggCCTCTGTGTGCGGCC
GGCCTTCTCTTCGGTGTGTGGGTGGCCGGGCTGAACGCGACTGTCTTGGC
CAGGGTGAGGGGCAGCACGGGCATGGAGTCGCCCGCACACCATCAGGCAC
GGGACGCGCTCGATGAATTCGTAGCCAATGTAGGGGCGATTTCTCCTCCA
AATATAGGCGGCGACAAAGATTATCTGGGACTTTGGGACAGGGACAGGAT
AGGAGCCAATGTGCTGAGGCGGATCCGGAATCTCTTTTTGCCCGAAGTAT
TCGATTCCTTCCCTTTACCCTTAATAGCTCTTATCTTGCACGGAGTGTTG
ATATTTTCGCTGGGAATGTTGCGTGTAACGAGTAGAAAGGGGACTGCTGG
CGACAATATCAAAGATTGGGCTTCGACGGTGCCTTtggaaggcgaaggcg
ggggcgagagTGGACGCGAGGGCGAGACCGGCGCGAAAGCCAGCCTAGAT
CAGGTGTCTGATCGATCAATGCTGGCAAGTCTAGCGCACACGTTTGGCTT
GGGCCCTGCcttggaggccttgaaggtGCTGCAGGCGGCATGGCAGGACA
TGCTCATTTTtagcttctttttccttctcgctcTCGCCTTGTGCGCCTAG
ATGAGTGATGCTGCAGCGCGTCGCCGGACGAGGATACTGTCTGGCAGCAA
GGACCGGATGAAGCTTGTCTCCGGGTCTTCAATCCAGGACAAAAGCGAAG
TCGATGCACCTCCCGAGGCCGCATATGATTTGGCAtcgggtgggaaggag
gaggcagaggactCTAATGTTTCTGAGGTTGGGACcagcaaggaggcagg
gatcCGCGCCCGCAATCGACGACGGCTGCAGGCTCGCAACATCAAGATTG
AGACAGTGCCAACTGAGGCGGATCATTTGAATGCCGGCCAATCCGATATG
CCGCCTGGCACCAACGACACCCCCCTGGGGGGCTCGGAGAAGCGCTCCTC
GAGCCCCTCTTTGTTGCCTTACGAGGGATTTTCGCACTCGGCCTCTAATA
CCGGCGCCTTGACCACCGGGGGAAATGTTTTGCGCAAACGCTTCCAAGCG
TCTCGGTATGGGGACCGAGGAGCGACTGCGACCGACGCAAATGCCGGAGT
CTCATCTCGTCCGGAGAACCCTACATCGCCCGCGCcgagcctcctccagg
ctctaACAGCCTCCGacgtccttctccgcctctggCCTCTGTGTGCGGCC
GGCCTTCTCTTCGGTGTGTGGGTGGCCGGGCTGAACGCGACTGTCTTGGC
CAGGGTGAGGGGCAGCACGGGCATGGAGTCGCCCGCACACCATCAGGCAC
GGGACGCGCTCGATGAATTCGTAGCCAATGTAGGGGCGATTTCTCCTCCA
AATATAGGCGGCGACAAAGATTATCTGGGACTTTGGGACAGGGACAGGAT
AGGAGCCAATGTGCTGAGGCGGATCCGGAATCTCTTTTTGCCCGAAGTAT
TCGATTCCTTCCCTTTACCCTTAATAGCTCTTATCTTGCACGGAGTGTTG
ATATTTTCGCTGGGAATGTTGCGTGTAACGAGTAGAAAGGGGACTGCTGG
CGACAATATCAAAGATTGGGCTTCGACGGTGCCTTtggaaggcgaaggcg
ggggcgagagTGGACGCGAGGGCGAGACCGGCGCGAAAGCCAGCCTAGAT
CAGGTGTCTGATCGATCAATGCTGGCAAGTCTAGCGCACACGTTTGGCTT
GGGCCCTGCcttggaggccttgaaggtGCTGCAGGCGGCATGGCAGGACA
TGCTCATTTTtagcttctttttccttctcgctcTCGCCTTGTGCGCCTAG

Synonyms

Publications