rna2540, rna2540 (mRNA) Nannochloropsis gaditana

Overview
Namerna2540
Unique Namerna2540
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2326
Alignment locationCM002459.1:616734..618148 -

Link to JBrowse

Properties
Property NameValue
Productnad-dependent epimerase dehydratase
Orig transcript idgnl|cribi|Naga_100036g45.2560.mrna
Orig protein idgnl|cribi|Naga_100036g45.2560
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:616734..618148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100036g45gene2428Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28140.1cds2532Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2540rna2540-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2540 ID=rna2540|Name=rna2540|organism=Nannochloropsis gaditana|type=mRNA|length=2326bp
ATTCCTTCATCTACCACCACTCCATCGCCGGCCTCTCCCACCCCGTCCGC
GACAAGACCCTTCTTGGGCAAATCTTCCTGGCAACCTTCGTCATGAGCGG
CATTTTCTACGGAGTGATCGCTCTCTTGGTGGCTTATTACTTCGGTCCTG
GCATGGCGCAGTCGTCCAATCTGGAGTGGACGGGCTACGGGCACACCGGC
CTGGGGCGAGTTGTGGGGACCTACGTCCTGCTTTTCCCCGCACTCGATGT
GGCAAGTGCTTTCCCCCTGAACGCGATCACGCTGGGCAACAACATGCTGG
ACATGGGAAACGATCAGAAGCGCCCGGACGGTAGCCCAGACCATCCATCG
AGGGTCACGACCGTCGCCTTCCGCCTCTTAGCCGCGATCCCCCCCCTGGT
GGCGGCTCTCTTCCTGCGAGACCTCGGCCGAATAAGCGAATATGCCGGCA
CGGTGGGCATTATCATCACCCTTGTGTTCCCAGCTGTTCTTAATCTTCGC
TCTCGTACTCGAATGAAGGATCTTTTCCAGCTAGAATCTGCCCGGACATA
CTACAGCAACGAGCTCTCGCGCAAGCGCTACGGACCCGTGAATCTGGCCA
TTGGCATAGGGTTGTTCTTATACATTCTGATTAATCTGCTTATGGATTGA
ATAAAATCATGTGTTGACTGTAGCACGAAGGGATAGGTTAAGGCTTGCTG
CACACGATAACGTCTTGTCCTGTCCATGTATAAAGAACTGTCGTGCGGGG
CATGACCGATCGCCGCCGTAAGTAATATCGGCGCGCTTTATAGTACAAAA
TAAATGTCCGCAGTCATGCCGCTGTTTTGCATAACTTACGAGGCGTGTCA
GGCTCGACACATCCTACCGGAATTGATTTGTGGTTCCCGCGCTTCTCTCT
GGTACTCATCTTATGTCTTCCTTCCATGCGAGCACAGTCACAGAGCAAGA
TGGCCGTGCCCATGATCACGCGCAGGCTGCGAACGATAAAGCTGTCAGTG
CATACCCTCCAAATTTCTTACTCAGCAGCCACGTCTGCGCCTATGGCTAG
AACGCGTACGCGCCTTGAGGTATCTAAAGCTCGGAAGGGAACACTCGCCT
TGATTGGATGCGGGAAAATGGGGTTCGCTATGGGAATAAATTTCTTGAAA
GCCGGCTATCCGCTGATGGTTTACGACAAATACAATAACGAGAATACAAG
ACGACTTGAAGCAGAGGGGGCATCTATCGTCAAGGACATTCGAATCCTAG
GATCACAGGCACAAATAATTGTGACGATGTTACCGAATGATGAAGTCTTG
GAAATCGTGTCACAAGACATTGTGCCAACCCTTTCGCCAGGCGCGCTTCA
TATCAGCTGTTCGACCGTCGCACCATCTACGTCTCGTGCGCTCGCCTCTG
TACACGCTGCAAAAGCCGTTGGGTACGTGGGTGCTCCAGTCTTTGCTCGT
CCTGAGGGCGTGGAGGAAAAACAAGCTTTTTTTGTGATGGGAGGCACAGA
TGTTCGCGCGATGAAAGCTGCGAAACCTGTTCTCCTGGCCACTGGATCGG
ATGTTTTCGAGTTCAGTCGAAGAGATGCTGGGGCGGGCAATGTTGTGAAG
CTGTGCGGTAATTTTCTCATCGCCAGTGCCATCGAAAGCATTGGAGAAGC
GCTCGCTCTAGCCGAGAATCAAGGATTGAATCGAGTCAAGGTTATGTCTA
TGCTCAGCGACACGATTTTTGACTGCCTCATCTACAAAGGGTAAGTGGCC
TGTAAGGTGTCAGGAGATCGCTGGAAGGCTACCCGGTTCTTTTGGATGAT
GCCTCAATGTAAGACGATTCACCAACCATGCCCGGTCCTTGGAAGCTATG
GCGAGCGTCTTTCACGGCGGGACCATCGACAGGGTGGTTTCGCTCTCAGC
TTGGGTCATAAAGACATCTCCTTGGTGCTGGACGCGGCTCGCCGTGGGAG
GGTTCCGATGCCGTTCGCTTCGCTGCTCCAGGATCGCCTGACAAGCACAA
TGAACCAAAAAGATTTGAATGGTATGGACTGGAGTGCCATTGGAGTTGAA
ATAAGTAGAAATGCTGGTACTCTTCTACATGTGGGAACGGACCCAAACCA
GCGAATTCGAAAGCGGAAGGCGAAGAACAGAAAAAAGGAAGAAGACTGTG
AAGTTTCATCGCCCCAGAAGTGACGAGGATTTTGCAAAATGCTATCTTTT
CATTCATTGCTTATTACTTCGCAGAAAAGACAACCAAGCAACTAAAGATA
CCCCGCAAGTATTAATAGACGGACAGTCGAACAGGGTGTGCCGTCCAGAG
AAAAGGCGTGTACGTTGCTGAGCATC
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protein sequence of rna2540

>rna2540-protein ID=rna2540-protein|Name=rna2540|organism=Nannochloropsis gaditana|type=polypeptide|length=372bp
MTPLLLFLLCITPASGFGAPRAPLISGQESTSRLFVFGLGYVGARLAREM
DESPGWAVAGTVISLSLASSIPPSVRVFEFDACPAAPKLLDPQGLCFLRR
ATHVLISIPPMDGYDPVVDLYRSELLKNCACLRWLGYLSSTSVYGDRQGA
WVTEDDEVRPVTSKALARVRAEQAWMELRQCMPDRPLLCRVFRLAGIYGP
DRNALTTLRKGMSGAQGGGSLPRLDGDSFVSRIHVEDIIRILRCSMDETV
ETGTEVEIYNVADNRPASRLEVFSFAARLLGDESILSNYHHAPSASTNAH
HFPSTSPRALSRRARRPESKRVSNKKMRKLLSESKAALASLNLRHPTFIE
GLCSILKDEKADIEQKNLENNS
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mRNA from alignment at CM002459.1:616734..618148-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2540 ID=rna2540|Name=rna2540|organism=Nannochloropsis gaditana|type=mRNA|length=1415bp|location=Sequence derived from alignment at CM002459.1:616734..618148- (Nannochloropsis gaditana)
AATAGAAGTCAGAGTTGCTGTTCAAGGCACCCACCTCTTCGCTCGCTCAA
TTCCTGAAACAAGAGGCGACATTCAGGTCACACTGACAGTTCGCACCCTA
CACCTGATAATCTAGTGATGAGCCGGTCGAGCAAATTGAGCAGAGGGGCA
ACAAGATGACTCCACTCCTCCTTTTCCTTCTGTGCATCACCCCGGCCTCG
GGTTTCGGGGCGCCTCGGGCCCCTCTCATCAGTGGTCAAGAGTCAACCTC
CCGCCTCTTCGTCTTCGGACTCGGTTATGTGGGCGCACGCCTGGCTCGAG
AAATGGATGAAAGCCCAGGCTGGGCTGTTGCTGGCACTGTGATCTCACTA
TCCTTAGCTTCGTCCATCCCGCCCTCGGTGCGGGTGTTTGAGTTTGACGC
CTGTCCTGCCGCTCCCAAGCTGCTCGATCCCCAGGGCTTGTGCTTCTTGC
GACGAGCAACGCACGTCCTGATAAGTATCCCCCCTATGGACGGCTATGAC
CCTGTTGTGGATTTGTATCGATCTGAGCTGCTTAAAAATTGTGCTTGCTT
GAGGTGGCTGGGCTATTTGAGCTCTACAAGTGTCTATGGAGACCGACAGG
GGGCGTGGGTTACAGAGGACGATGAGGTGCGACCCGTTACGTCCAAGGCT
CTTGCACGGGTTCGAGCGGAGCAAGCATGGATGGAGCTCAGGCAATGTAT
GCCAGATCGACCTTTGTTGTGCCGTGTTTTCCGGCTTGCTGGGATTTATG
GCCCCGACAGGAACGCTCTGACCACGCTGCGAAAAGGAATGTCAGGCGCC
CAAGGCGGGGGCTCTTTGCCGCGTCTGGACGGTGACAGTTTCGTCAGTCG
CATCCACGTGGAGGACATTATACGCATTCTGAGGTGCTCTATGGACGAGA
CAGTAGAAACTGGAACGGAAGTCGAGATATACAACGTGGCAGACAACCGT
CCCGCCTCGCGCCTTGAAGTCTTCTCCTTCGCTGCAAGGTTGCTTGGCGA
TGAATCCATTCTTTCAAATTATCACCATGCGCCCTCTGCTTCGACGAATG
CACATCACTTTCCCTCAACCTCGCCGCGTGCCCTCTCCCGCCGCGCTCGT
CGTCCCGAGAGCAAACGTGTGAGTAACAAGAAGATGAGAAAGCTTCTTTC
CGAGAGCAAGGCCGCCTTGGCCTCTTTAAATCTACGCCATCCCACATTCA
TAGAAGGGCTTTGTAGTATTTTGAAGGATGAGAAAGCAGACATTGAGCAA
AAAAATCTTGAAAACAACTCCTGATGCTCAGCAACGTACACGCCTTTTCT
CTGGACGGCACACCCTGTTCGACTGTCCGTCTATTAATACTTGCGGGGTA
TCTTTAGTTGCTTGGTTGTCTTTTCTGCGAAGTAATAAGCAATGAATGAA
AAGATAGCATTTTGC
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Coding sequence (CDS) from alignment at CM002459.1:616734..618148-

>rna2540 ID=rna2540|Name=rna2540|organism=Nannochloropsis gaditana|type=CDS|length=1119bp|location=Sequence derived from alignment at CM002459.1:616734..618148- (Nannochloropsis gaditana)
ATGACTCCACTCCTCCTTTTCCTTCTGTGCATCACCCCGGCCTCGGGTTT
CGGGGCGCCTCGGGCCCCTCTCATCAGTGGTCAAGAGTCAACCTCCCGCC
TCTTCGTCTTCGGACTCGGTTATGTGGGCGCACGCCTGGCTCGAGAAATG
GATGAAAGCCCAGGCTGGGCTGTTGCTGGCACTGTGATCTCACTATCCTT
AGCTTCGTCCATCCCGCCCTCGGTGCGGGTGTTTGAGTTTGACGCCTGTC
CTGCCGCTCCCAAGCTGCTCGATCCCCAGGGCTTGTGCTTCTTGCGACGA
GCAACGCACGTCCTGATAAGTATCCCCCCTATGGACGGCTATGACCCTGT
TGTGGATTTGTATCGATCTGAGCTGCTTAAAAATTGTGCTTGCTTGAGGT
GGCTGGGCTATTTGAGCTCTACAAGTGTCTATGGAGACCGACAGGGGGCG
TGGGTTACAGAGGACGATGAGGTGCGACCCGTTACGTCCAAGGCTCTTGC
ACGGGTTCGAGCGGAGCAAGCATGGATGGAGCTCAGGCAATGTATGCCAG
ATCGACCTTTGTTGTGCCGTGTTTTCCGGCTTGCTGGGATTTATGGCCCC
GACAGGAACGCTCTGACCACGCTGCGAAAAGGAATGTCAGGCGCCCAAGG
CGGGGGCTCTTTGCCGCGTCTGGACGGTGACAGTTTCGTCAGTCGCATCC
ACGTGGAGGACATTATACGCATTCTGAGGTGCTCTATGGACGAGACAGTA
GAAACTGGAACGGAAGTCGAGATATACAACGTGGCAGACAACCGTCCCGC
CTCGCGCCTTGAAGTCTTCTCCTTCGCTGCAAGGTTGCTTGGCGATGAAT
CCATTCTTTCAAATTATCACCATGCGCCCTCTGCTTCGACGAATGCACAT
CACTTTCCCTCAACCTCGCCGCGTGCCCTCTCCCGCCGCGCTCGTCGTCC
CGAGAGCAAACGTGTGAGTAACAAGAAGATGAGAAAGCTTCTTTCCGAGA
GCAAGGCCGCCTTGGCCTCTTTAAATCTACGCCATCCCACATTCATAGAA
GGGCTTTGTAGTATTTTGAAGGATGAGAAAGCAGACATTGAGCAAAAAAA
TCTTGAAAACAACTCCTGA
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Synonyms
Publications