rna2535, rna2535 (mRNA) Nannochloropsis gaditana

Overview
Namerna2535
Unique Namerna2535
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1554
Alignment locationCM002459.1:607306..608265 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g179.9075.mrna
Orig protein idgnl|cribi|Naga_100004g179.9075
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:607306..608265 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g179gene2423Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2535rna2535-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28144.1cds2527Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2535 ID=rna2535|Name=rna2535|organism=Nannochloropsis gaditana|type=mRNA|length=1554bp
GATTGTTTCTTAATTGGCCCACTACGAAGACAAATGCCTGTCTTGCCAGC
GTTCCATCACCGTCTCGTAGAAGTCTCTTGAGATCTGTCCAGCACGCTTT
TTCAAAATCCTCATTCCTTTGTTTCTCTGAACAAGCACTATTGCAACGGA
CAAGCATAGTTTCTGTACTTGTTGTTGCTTTTTTTATTAGCGAAGCCAAT
TTCAGCTCGTCTGCCCTGGAAGTCATCCCAACTTTGCCGTCCCCAGCCAC
CAAAATTGACGTCCTGTTCTGTTGGCGTTTGCGCTGACGTGGTTTCAAAT
GTGGAGCAAGGGAAGACGACATCGAGTCTATGCATGGACTGGAGAAGCGT
GTAAGAGTGCTGTCGTGAGTGTAAATATGCATCAAGTGGAACAATTTCTA
CTACGCGAGTCTCGGGAATCGCTGTAGAGCGTGACATGCCGTGACACCCG
AGCCCCCCTAAATCTGACGAGATCACTTGGCGTCTGTGTTCACCTTGTAA
CTCTCTTCAGTCCTTGTAAGGCATCTCAAAGCAGGGTCATGACACCATGT
AATCTGTACACCGTGTATCACGTATTTAATGTCCTCACGCTTAGAACCTC
CCCGCCCCTGGCTCCAACCTCCCCGGCCTCTTTTCCCCTGCGGCAACAAG
TCGTATTTGTTATATGCGTCGGCACGAGCTTCTCTACGTGCTTTGCACCG
TGGCTGTGTCTACGATCCAGGCCTTTGTGCTGACTCCCTCTGCGCTAAGA
AGTTCCATCGTGAATACTCCGTGTCGTACTACAGCTCCCTCGCGTTTCGT
AACTACTTCATCATCGCCATGGCTGGTTCGACAACTGACGGTAGGAGGAG
AAGACCCGGGTGCTGTTACTCTTCAAAGTACATGGCAGCTCGTTACAAAT
GTCGGGGCCTTAGTCGTAGGTGCGCTCGTCCTGGCGGAAGTTGTGCAGGA
TTGGCCCCGTGGTTGGGTCAACAGACAGCTCGTTGAGGCCGGTCCGTCCA
CCCTAGGGCCCCAGGCAGGCCGCGGTCTTTTCGCCGCTCGCAACATACCG
AGAGACACAGTTATTGGCAATTTTCCAGGGGTTGTCTCATCCCGAGCAAG
CTGGCTTGGGCGCAAAGATAGCGAGGAAGCTGCATTGTTGGCGCGACGCT
ACACATGGTCTCTGGCCACGGGGGACGTTTTGGACCCAACACTGAGCAAC
GGTGAGCTACCTGACACACTAATCTTCTTCGGAGGCTTGCTACGGATCCC
GACACTCCTTGCGTTGGTGAATGAGCCCCGCGCGGGCATGGATCTAAATG
TTGTGGCCGTGGTGAGTGAACGGGACGTCGCTTACGTGGCGGAGCGCGAC
ATCTTCGCAGGAGAGGAGCTGATGACTGACTACGGCCCTGCCTATGATCG
GCGACACTACCGCTTGTAAACCATGCGTCTGGAAACACGCCCACTTAGAA
TTTAAATTAATGAAAATTGAAATGTCACCTAGACGATCTCTTGTTGGAAA
GTTATCACATTTCCTTAAGCCACCCTTAAGTATCATGATATCATTCAGCC
TTCT
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protein sequence of rna2535

>rna2535-protein ID=rna2535-protein|Name=rna2535|organism=Nannochloropsis gaditana|type=polypeptide|length=319bp
MREREALQAEAQRVEMSRSLAARCRAHEGAMRQGVQELRDALVQMEACFT
LIVPDVREGIEVVGESGTGEATSPAQRSQTEWDERVQAVGEALEASCQAS
KPGVEDERASEHDEESSVEWESEDGVPAESVERAVPLQPSWVENGRDVCE
DEEEGDDVEDSLYALGTLPFYEIEVELPWLVSGAQTEALETADLKPVFEQ
LRELYGVLRRRLLPQIEQWWRLLSAFCAEHPPHVAEEASVGLRELSQEVS
TLRSQGWRSVAKCKEIGGSYRKRKHSKTTADCHGSGSTQRALTASTLELE
AFLEDYHATKELKSRKSKK
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mRNA from alignment at CM002459.1:607306..608265+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2535 ID=rna2535|Name=rna2535|organism=Nannochloropsis gaditana|type=mRNA|length=960bp|location=Sequence derived from alignment at CM002459.1:607306..608265+ (Nannochloropsis gaditana)
atgagggagcgggaggctttGCAGGCTGAAGCACAGAGGGTTGAGATGTC
AAGATCTCTGGCCGCTCGTTGCCGAGCCCACGAGGGGGCCATGCGACAGG
GCGTGCAAGAGCTGCGGGACGCGCTGGTACAGATGGAGGCCTGCTTTACC
TTGATAGTCCCCGATGTGCGCGAGGGTATTGAGGTAgtgggggagagcgg
gactGGGGAGGCGACGAGCCCCGCCCAGAGAAGCCAGACTGAGTGGGACG
AGAGGGTGCAGGCCGTGGGGGAAGCGCTCGAGGCAAGTTGTCAGGCCTCG
AAgccgggggtggaggacgagcggGCAAGCGAGCATGATGAGGAAAGCAG
CGTAGAGTGGGAGTCGGAGGATGGTGTACCGGCCGAAAGCGTCGAGCGGG
CAGTGCCCTTGCAGCCGTCGTGGGTTGAGAACGGAAGAGACGTCtgtgaa
gacgaggaggagggcgacgacgtggaggacagcTTGTACGCTTTGGGAAC
CCTGCCGTTTTACGAAATTGAGGTCGAGCTGCCATGGCTAGTAAGCGGCG
CACAGACAGAGGCCTTGGAAACTGCGGACCTGAAACCCGTGTTTGAGCAA
CTCCGGGAGCTCTACGGAGTGCTGCGACGACGACTGCTTCCGCAAATCGA
GCAGTGGTGGAGGCTTTTGTCAGCGTTTTGCGCCGAGCACCCCCCCCacg
tggcagaggaagcaagcGTGGGACTCAGGGAGTTGTCACAGGAAGTGAGC
ACCCTCAGGAGCCAAGGCTGGCGAAGCGTTGCCAAATGCAAGGAGATCGG
CGGGTCTTacagaaaaaggaagcacTCGAAAACGACTGCTGATTGCCACG
GCTCTGGTTCGACCCAACGCGCCTTGACCGCGTCGACGTTGGAGCTCGAA
GCTTTCCTCGAAGACTATCACGCAACCAAGGAATTAAAATCGAGGAAGTC
AAAAAAATAA
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Coding sequence (CDS) from alignment at CM002459.1:607306..608265+

>rna2535 ID=rna2535|Name=rna2535|organism=Nannochloropsis gaditana|type=CDS|length=960bp|location=Sequence derived from alignment at CM002459.1:607306..608265+ (Nannochloropsis gaditana)
atgagggagcgggaggctttGCAGGCTGAAGCACAGAGGGTTGAGATGTC
AAGATCTCTGGCCGCTCGTTGCCGAGCCCACGAGGGGGCCATGCGACAGG
GCGTGCAAGAGCTGCGGGACGCGCTGGTACAGATGGAGGCCTGCTTTACC
TTGATAGTCCCCGATGTGCGCGAGGGTATTGAGGTAgtgggggagagcgg
gactGGGGAGGCGACGAGCCCCGCCCAGAGAAGCCAGACTGAGTGGGACG
AGAGGGTGCAGGCCGTGGGGGAAGCGCTCGAGGCAAGTTGTCAGGCCTCG
AAgccgggggtggaggacgagcggGCAAGCGAGCATGATGAGGAAAGCAG
CGTAGAGTGGGAGTCGGAGGATGGTGTACCGGCCGAAAGCGTCGAGCGGG
CAGTGCCCTTGCAGCCGTCGTGGGTTGAGAACGGAAGAGACGTCtgtgaa
gacgaggaggagggcgacgacgtggaggacagcTTGTACGCTTTGGGAAC
CCTGCCGTTTTACGAAATTGAGGTCGAGCTGCCATGGCTAGTAAGCGGCG
CACAGACAGAGGCCTTGGAAACTGCGGACCTGAAACCCGTGTTTGAGCAA
CTCCGGGAGCTCTACGGAGTGCTGCGACGACGACTGCTTCCGCAAATCGA
GCAGTGGTGGAGGCTTTTGTCAGCGTTTTGCGCCGAGCACCCCCCCCacg
tggcagaggaagcaagcGTGGGACTCAGGGAGTTGTCACAGGAAGTGAGC
ACCCTCAGGAGCCAAGGCTGGCGAAGCGTTGCCAAATGCAAGGAGATCGG
CGGGTCTTacagaaaaaggaagcacTCGAAAACGACTGCTGATTGCCACG
GCTCTGGTTCGACCCAACGCGCCTTGACCGCGTCGACGTTGGAGCTCGAA
GCTTTCCTCGAAGACTATCACGCAACCAAGGAATTAAAATCGAGGAAGTC
AAAAAAATAA
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Synonyms
Publications