rna2533, rna2533 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2533
Unique Name	rna2533
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1943
Alignment location	CM002459.1:602506..605000 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g177.9092.mrna
Orig protein id	gnl\|cribi\|Naga_100004g177.9092
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:602506..605000 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g177	gene2421	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2533	rna2533-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28161.1	cds2525	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:602506..605000+
coding sequence from alignment at CM002459.1:602506..605000+

mRNA sequence

>rna2533 ID=rna2533|Name=rna2533|organism=Nannochloropsis gaditana|type=mRNA|length=1943bp
CACGTTAGACTCCGCGCATGACGCGAATCCCATAACAGATTGCGACCTAC
AATCATCAAGCTGACAATATTTTAGGGGTACGGGTGGAAAGGAACACGGA
GGTTTCAAGGCGGACGCGGACCTTGAGAAGCCTGGCAATTCACTGATGAT
AGTAGAGGTCATGGCCACATCATGGGATGGCGCACCCATGAATCAATCAA
TTAAGAGAACGCCGACAGCAACAACCTTTATCGAGGTGGGATCAGGTCTG
GAGGACGATAAAACACCGGCTCACCTGGATCAGGAAGGAACCCGTTCCTC
CCTTCGAAACGAATCCCGTGGGGTTAGTCGTCCACATGCACCGGAAGCTG
GTTGCAATAGCGGCGTCGCTGTATTGACTGAATCTTCGCGGGGAGGGGGA
GCACACAGAATAAGGAGGAGATCAGGGTCACGAGACGGAGCGGCAGATAA
GTGCCGTGGAGGGATTCCGAATCCAGCGCGTGCCGCACCCATGTGCTGGG
AGAGACAGGGCTCGTCAATGCACATTCAGCATCAGGACTGTTCTGCGGGC
AACGGGGATAGCAGTGACACGCTAGGCGTTGATTCAGATGATGACGAGTT
GAACCAGGACGAAGAGATGGTCGCAGCTTTGGCAGCGGCGGCCGCAGCGG
CTGCATCGACACCTGGTGAAGGAAGCAGCGAGGGGTTGAAGAGGGAGGAG
TCTGCGATACCTCTTCCAGAAATGGTAAGCAGACTGTCCAGCCGATCGTC
TGCTCCTCAAGCCTCTGTAGTTGTGCCATCATTGGTAGCCTTGCATGAGG
TGGACAGCTACTACTCTTCTTCAAGCGCCCGAGCCACGCGAGCTAGCAGC
TTATCGCACTCGGAGTCAGTCAACGTCCCCCGAGAGCGGAGTCAACAACT
ATATGTGCCAATGCCGGCAGCTATAAGTAGGACTTTGGGGGAGAACAACA
ACGCTATGATCGACCGACGAGCATGGTTAGAAGTTGAGGACCGGAAGCAC
CGCTACGCCAAAAACCTGCGTTTGTACTACAAGGAATGGGACCGTCGAGG
TCAGCCAGGGAGTTCTTTTTGGAGCTGGTTAGACGAGGAGAGAGTGGAGC
TAGAGGAATGCTCCAGGGCGCAATTGGAGGCGGAGACGGTCTACTACTGT
TCGTTCACCAAGGATCGGGAGGCATTTGAGGTGCAATTCGATGAGCATGG
GCTCTTGCATCAGCGACAGGCAGGGGCCTGGGATTTGGTGGAGACCGGGC
CGGACGGGTGGATCTTCGTTCTGAGGGACGGCCTCGTCTATGCCCACGAG
AAGAAGACAGACCAACCGCCCAGGTTTCACCACTCTAGCTTCTTCGCCGG
CGAGTGCGTGCAGGCGGCCGGGCTCTTCGTCGCCACCGGGGGGGTCCTTG
AGCGTCTGTACCCGCACTCAGGCCATTACCGGCCTTCCGACAGCCATCTG
CTCTCCCTCCTCCTCTTCCTGGAAGCCCAGCATGTGGACATGGCGCTGAT
GCAAGTCGATGTCCAGCTCGTCATGAAAGTGGCGCGCTCGCACGACGCTA
CCAAAGGCGGGCGCCGCCGTAAGATCGACAGTCCTTACATGTGGACAGGG
CTGCACGCCAAGTATTTTTTGCTGGCTAAACGATACGCGTGGGACAAGAA
ACTCTTCGATGAGATGCTGAGGCACCGTCTCTGTTTGTGCCCGCCCGGGA
CGTGAACATTTTTCCTGAAGGCCGTCGACTCCAAGCAAGGAGGTTGTATC
CCGCCCCGTGGCGGATTACATCTCTAGTCGTGAATTTGGTGTTGGGATTG
GGGGGGGGGAATATTTGTGCGTACATATGGCCGCTACGAAAATGACAAAG
AACCAACCGATATCGTAGACAAATACAAGAACGGAACACCAAGTTGTTGA
TATCATGTTGGCATGCTGCGGAATTTAAAAAAGTCGGACGGTA

protein sequence of rna2533

>rna2533-protein ID=rna2533-protein|Name=rna2533|organism=Nannochloropsis gaditana|type=polypeptide|length=333bp
MQGTDPIEYLANCHLGSLKWLLEPNRSRSAPRHSQPTPSRHCLAGQCTCC
AMQVCILGNIANFLNSQELSVLACASAQLARGVYRREGVTLCNKGFLFPA
FKSIEDIDGNPSKEASSRGKMYAKYVPRPLRNQSDGHSWYYLDLARPERV
AQVNAGASMGEKSSMDQGRAERMSGNIGGLGSPHLADCLDRKRRFGVADF
NRRGNGKLRKRQMCRTIVVLLVLVTLLAGFALVDREGGERPPPRASIGAA
AFCLMLALLCLMVGLCLGCEYLHERELTTRTRATGIAERSIPQSPGVDRE
CGAGEAQGLLLAKGHKSMYGTSLVQQEVILTLS

mRNA from alignment at CM002459.1:602506..605000+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2533 ID=rna2533|Name=rna2533|organism=Nannochloropsis gaditana|type=mRNA|length=2495bp|location=Sequence derived from alignment at CM002459.1:602506..605000+ (Nannochloropsis gaditana)
CATACGTGTCAATTACAGGGCTGTGGCTCACACTTCAGCGTCCTTGCCCG
CCCTGTTCAGCTGCTTGTCTCCGTTTCTCACTGGATTCCTAGCTTTTGTG
ATATTGGGCGAGAGGGTCGGCTCTATAAGCGATATCATTGGCCTACTTTT
AAATCTGGGGGGGCTTATGTCCGTTATATATTCCAAGATGCGTTTAGAAA
AACCCATCCCTGTCGTTGGAATGGCGAATCATGTGGTGCATGGTGATAGA
GTTGATGGGATCAACTCCTCACCAGATACTTATTTGACGGAAGCCAAAGA
GCCAGAGCGTAAGGAGAGCCATGATGTGACCAAACCTATGGTTCCAAACG
GTATTTTTTTGCGGCCTGGGACGCCAAGCGCATTTTGAAAAAGACACTCA
AAAAGCAGAATCCATGTAGATAAAGATGTCACTTTATCGTCGTCCCTTAC
AAAAGTATGTGTCACTCTTTTGCGAGCAGACAACCAAAAAAATtggaaat
gagggagaaTGTGGTTTCCGAAATGTTTAAGGagtttttttctttttttt
aaaaaaattctttctctttcattATTTTTTGTTGTTATTTGTGAAAAAGT
TGTAGCTCATTCTATTCATGACATTCCCGTAGATTACATTTTGTGTGAAA
CGTGGATGTGTATTTAAATTCCTGCCCGGAACGTAGCGAGTCCGCGGCAG
CAGAAGTTGAACCATGGCATGAGAGCCGACGAGGGTCGGTGCCTTCGGAG
TCAAGCTGGTCAGGAGGCGGCCCCTTAATGTCATGATGATCAATGCTGGG
TCGTGGTCACTGCATACATCCTAAGCAAGTTTTCCAAAGAGGAGAATGGC
GGGGAGCTTCAAGTGCGACCGAAGGAGGGTGTGAGGAGTGGCTGAGtgca
gaggggaggggagttgGGTTACTTGTACTACATATAAAGCCCGCAATGGA
AACCGCTTGAAAACAAGAAGAAATACCTTGAACAGCGTCAACTTCCAAAG
TGATATATCAggccctttcttttctcacaTGTTTGACAAGGAATACAACA
AATCGACTCCAAGTTTTGTGGGCAGTACCGTCGAAAGAGTGGAATCAAGC
GGGGCTTGACGCTGTGAAGGCCAtttgaagggaaaaaaaaaaaggtttTT
CGCATCTCACTGCCTTTTTTGGGGCGAACAAGATATCGACAACGTGCAAT
CGCAAAGCGCGTGTGGAGTGTTCGAAGAGTGGAATGCAAGGCACCGATCC
GATCGAGTACCTTGCCAATTGCCATTTAGGGTCATTAAAATGGCTTCTCG
AGCCCAATAGAAGTCGGTCTGCGCCGCGACATTCTCAACCTACACCCTCA
AGACATTGTCTAGCCGGGCAATGCACTTGTTGCGCGATGCAGGTCTGTAT
ATTGGGAAACATTGCAAACTTCTTGAATTCGCAAGAGCTTTCTGTTTTGG
CGTGTGCCTCCGCCCAATTAGCCAGAGGCGTGTACAGAAGGGAAGGTGTC
ACACTATGCAACAAGGgctttctcttcccagcATTTAAGTCGATTGAGGA
CATAGATGGAAATCCAAGCAAGGAAGCAAGTAGTCGGGGCAAAATGTACG
CAAAATACGTCCCGCGACCGCTACGAAATCAGAGTGACGGACACTCATGG
TATTACCTGGATCTCGCAAGACCTGAGCGTGTGGCGCAAGTCAATGCGGG
CGCGAGCATGGGAGAAAAAAGCAGCATGGACCAGGGCCGCGCTGAGAGAA
TGTCCGGGAATATAGGAGGGCTTGGTTCTCCCCATCTCGCGGATTGCCTG
GACAGAAAGCGACGTTTTGGGGTCGCAGACTTTAATCGTCGCGGGAATGG
AAAGCTGCGAAAAAGACAAATGTGTCGAACAATTGTAGTGCTGCTGGTCT
TGGTCACCCTTCTCGCCGGATTCGCTCTGGtcgatagggagggaggcgag
cggCCACCTCCTCGAGCGTCAATCGGTGCGGCAGCCTTCTGCCTCATGCT
AGCTCTTCTTTGTCTCATGGTCGGACTGTGCTTGGGATGCGAGTACTTGC
ATGAACGAGAGCTGACGACCAGGACGCGGGCCACGGGCATCGCAGAGAGG
AGCATCCCGCAGAGCCCAGGCGTTGACCGGGAgtgcggggccggggaggc
TCAAGGTCTGCTCCTAGCGAAAGGGCACAAGAGCATGTATGGGACTTCCC
TCGTTCAGCAAGAGGTCATCCTTACTCTCTCATGACACAGAGAAGCGTAA
CAGACGGCTTATTCCCAAGCGCCCACAGAGGACGGAGCCCGATTCACGGA
CCTCAGGCTGCACGCATCGGAGAAGGCTGAATGATATCATGATACTTAAG
GGTGGCTTAAGGAAATGTGATAACTTTCCAACAAGAGATCGTCTAGGTGA
CATTTCAATTTTCATTAATTTAAATTCTAAGTGGGCGTGTTTCCAGACGC
ATGGTTTACAAGCGGTAGTGTCGCCTGTATTGAAGGGAAATGACG

Coding sequence (CDS) from alignment at CM002459.1:602506..605000+

>rna2533 ID=rna2533|Name=rna2533|organism=Nannochloropsis gaditana|type=CDS|length=1002bp|location=Sequence derived from alignment at CM002459.1:602506..605000+ (Nannochloropsis gaditana)
ATGCAAGGCACCGATCCGATCGAGTACCTTGCCAATTGCCATTTAGGGTC
ATTAAAATGGCTTCTCGAGCCCAATAGAAGTCGGTCTGCGCCGCGACATT
CTCAACCTACACCCTCAAGACATTGTCTAGCCGGGCAATGCACTTGTTGC
GCGATGCAGGTCTGTATATTGGGAAACATTGCAAACTTCTTGAATTCGCA
AGAGCTTTCTGTTTTGGCGTGTGCCTCCGCCCAATTAGCCAGAGGCGTGT
ACAGAAGGGAAGGTGTCACACTATGCAACAAGGgctttctcttcccagcA
TTTAAGTCGATTGAGGACATAGATGGAAATCCAAGCAAGGAAGCAAGTAG
TCGGGGCAAAATGTACGCAAAATACGTCCCGCGACCGCTACGAAATCAGA
GTGACGGACACTCATGGTATTACCTGGATCTCGCAAGACCTGAGCGTGTG
GCGCAAGTCAATGCGGGCGCGAGCATGGGAGAAAAAAGCAGCATGGACCA
GGGCCGCGCTGAGAGAATGTCCGGGAATATAGGAGGGCTTGGTTCTCCCC
ATCTCGCGGATTGCCTGGACAGAAAGCGACGTTTTGGGGTCGCAGACTTT
AATCGTCGCGGGAATGGAAAGCTGCGAAAAAGACAAATGTGTCGAACAAT
TGTAGTGCTGCTGGTCTTGGTCACCCTTCTCGCCGGATTCGCTCTGGtcg
atagggagggaggcgagcggCCACCTCCTCGAGCGTCAATCGGTGCGGCA
GCCTTCTGCCTCATGCTAGCTCTTCTTTGTCTCATGGTCGGACTGTGCTT
GGGATGCGAGTACTTGCATGAACGAGAGCTGACGACCAGGACGCGGGCCA
CGGGCATCGCAGAGAGGAGCATCCCGCAGAGCCCAGGCGTTGACCGGGAg
tgcggggccggggaggcTCAAGGTCTGCTCCTAGCGAAAGGGCACAAGAG
CATGTATGGGACTTCCCTCGTTCAGCAAGAGGTCATCCTTACTCTCTCAT
GA

Synonyms

Publications