rna2527, rna2527 (mRNA) Nannochloropsis gaditana

Overview
Namerna2527
Unique Namerna2527
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1823
Alignment locationCM002459.1:589503..590273 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g171.9239.mrna
Orig protein idgnl|cribi|Naga_100004g171.9239
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:589503..590273 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g171gene2415Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2527rna2527-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28308.1cds2519Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2527 ID=rna2527|Name=rna2527|organism=Nannochloropsis gaditana|type=mRNA|length=1823bp
ATTGCTCATAATCGCTGTCGGCTCTCGTCACCACCTCACACTCGTATGTC
TCACAACTCAGGAACACTAGAACATAACGTGCCTAGGGGAAGGCACACAT
AAACTTCCGTCGATCAGTTTCATTGCATAGCTGGCAGGATTCATGCCTGC
CCCAAGGAAAGTGGGTTTACGGAGACTGCGGGGACTTGTCCAGTCTTGTT
CCACCGGCTTCAGGGGGGGGGTCCAGCCGAGCTTGATCTCTTCGAGGACA
GCAATTTCATATGTCAACCGTGCTGTGGATCACATCTACTACTCCCATGC
AAGCATAGGCAGTACAACAAATATTGTTCATCGAAGTATTCGATCTGGCT
GGGCAAAGACGGCTGCAGACGCCTCAATTGACGTAATAGTAAATGCGGTG
ACTCGACCAGAAATTGATGAGCCTACCGTCAAAGTCGCAGAGCCTCGGCG
TGCAATTATTAAGGCGGACCAAGCAGGCGAGCTCGAGGAAGATTTGGCCT
TGGACTTGCAGCGGAAGCCGCGGCTGGACCTTCTCGCTGGCTGGGCGGGG
GCAGCACGCGGTGTCGATCCGTTCAAGATCGTTGAAAGCGATATGAGGAG
TCTGTCAGCAGGTATCAAGTCTTTGCTGGGATCTGATCATCCTGTTTTGG
AGGCCTGTGCGAAGTATTTTTTTGAGCTAGACGGAGGCAAAAAGATTCGC
CCTACCATGGTCTTGCTGATCTCGCGGGCTGTCGCCGCCCACGCGCCCGC
CCAGGGTGTTAATGGAAGTCGCGCGTTTACTAGCACGTCAGAATCTTCAA
CACCACTGCCGTCGCAAAAACGACTCGCAGAGATCACCGAGATGATCCAC
ACGGCCAGCCTCTTCCACGACGACGTCATAGACGAGGCCGACGAACGGCG
CGGGGTGCCGTCCATCAACAAGATCTACGGAAATAAGATGGCAATATTGG
CTGGCGATTTCCTTTTGGCGCGTGCATCGGTGAGTTTGGCCCGTTTGCGG
AATATTGAGGTTGTAGAGCTGCTTTCAACGGTGATCGAGCATCTCGTAAA
GGGCGAGGTAATGCAGTCTCGACCTCAAGCGTTGGTGGATGGAAGTGGAA
CGGGCGAGAACGGACAGGCGGCGCTGGAGTATTATCTTCATAAAAACTTT
TACAAGACTGGCTCGCTTATGGCGAACTCCTGTCGTGCTGCCGTCCTCCT
TGCGGGTGGTGGGGACGCCCTCCAAAATCAAGCGTTCGCGTACGGCAGGC
ACGTGGGCTTGGCTTTCCAATTGGTCGACGACGTGCTAGATTTCGAGCAG
ACCTCAGAGACTTTGGGGAAACCCGCACTAAACGACTTGAGGCAAGGACT
GGCGACCGCGCCTGTGCTCTTGGCGGCACGAACCTTTCCTGATGAGGTGG
GCGATATGGTGAAACGCAAGTTTGCTTCGGAAGGAGACGTTGAACGGGTA
AGGGAGATGGCGTTTTTTTCGATTGCTATGACTTCACCTCGGCCTCGTTA
TAACTCAAGCTATCTGGGCACATTACTATAGGCGCTGGACCTGGTTCAAC
GGAGTGACGGATTGAAGAAGGCGAAAGACTTAGCCTTAGTGCAGGCAGAG
CAGGCCATGGGAGCCGCCCTAACAATGTACCCTTCACCAGCTCGAGACGG
GCTTATCAAGCTGGCATCGCTGGTTGTGAATCGCACGAGCTAAAAGTTAT
TGAAATGGTGCAAGTTCACGGAAGCCATTGTACATGTTCGTTTATTTGGT
GACTGCATATTAGCTATCAAGAAAGACACACCCTGTATATGAACGCTTAC
AATTGAGCGGTGTTGCAAATCGA
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protein sequence of rna2527

>rna2527-protein ID=rna2527-protein|Name=rna2527|organism=Nannochloropsis gaditana|type=polypeptide|length=68bp
MFADISEAIRALAIQIASILFAILARLKPLAYYEPAFQVFVYNVKAYEAR
KRGKVICSHKEEDMCQEQ
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mRNA from alignment at CM002459.1:589503..590273+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2527 ID=rna2527|Name=rna2527|organism=Nannochloropsis gaditana|type=mRNA|length=771bp|location=Sequence derived from alignment at CM002459.1:589503..590273+ (Nannochloropsis gaditana)
ATGTTCGCGGATATCTCGGAGGCGATCCGCGCGCTGGCAATCCAAATTGC
TTCCATTCTGTTTGTAAGTGCGCAAAACATAAAGAGCACATTGATGGATC
GGTTTTTCTCGGTAGGTTTGTGCTTCATCTGCAAACATATTTTCAATGCC
GTGTGACGTAGCACACACCCGTACACTCAAAGAAATCCACAAAATTCTCA
ACGATAGGCAATTCTTGCTCGGCTGAAGCCTCTCGCTTACTATGAACCTG
CTTTTCAAGTCTTCGTGTATAATGTCAAAGCTTACGAAGctagaaaaaga
gggaaagtgaTCTGTTCACACAAGGTCGGCACGATAGCCTCCCCGAATGA
AAAGAAGATTTACTTTGATCCGAGCTTACATTTTGATGAACCATCAACAA
AATtgacaggaagaagacatGTGCCAGGAACAGGTGGAACCCTCTGAGGA
AATTCGTCTCCAACTGGTTCGCTTGCTTCACGACTTTGTCCGCGTGAACT
CACAGCCGAAATTTGCTTCTGGCTTGTACCCTTACTTTCATGACATGATT
CGCATCGTTGAAGGAGTTACACATGACCCGTTTCCGGTACGCTTTCACAA
TAAATATGCGAGATTGCATTGAAACTTAACGTAGGTATTTACACACAGGC
ATTGCAAGTTGAGGCGTGCTCAGCTATAGGCACAATAGCCCAGTCTCGTG
CATTCGAGGTATGGATTGTGATTTACAACATGTACAGCATACGTCCTGTC
CTTTTACTTATGAATTAGTAG
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Coding sequence (CDS) from alignment at CM002459.1:589503..590273+

>rna2527 ID=rna2527|Name=rna2527|organism=Nannochloropsis gaditana|type=CDS|length=828bp|location=Sequence derived from alignment at CM002459.1:589503..590273+ (Nannochloropsis gaditana)
ATGTTCGCGGATATCTCGGAGGCGATCCGCGCGCTGGCAATCCAAATTGC
TTCCATTCTGTTTGCAATTCTTGCTCGGCTGAAGCCTCTCGCTTACTATG
AACCTGCTTTTCAAGTCTTCGTGTATAATGTCAAAGCTTACGAAGctaga
aaaagagggaaagtgaTCTGTTCACACAAGgaagaagacatGTGCCAGGA
ACAGTAGATGTTCGCGGATATCTCGGAGGCGATCCGCGCGCTGGCAATCC
AAATTGCTTCCATTCTGTTTGCAATTCTTGCTCGGCTGAAGCCTCTCGCT
TACTATGAACCTGCTTTTCAAGTCTTCGTGTATAATGTCAAAGCTTACGA
AGctagaaaaagagggaaagtgaTCTGTTCACACAAGgaagaagacatGT
GCCAGGAACAGTAGATGTTCGCGGATATCTCGGAGGCGATCCGCGCGCTG
GCAATCCAAATTGCTTCCATTCTGTTTGCAATTCTTGCTCGGCTGAAGCC
TCTCGCTTACTATGAACCTGCTTTTCAAGTCTTCGTGTATAATGTCAAAG
CTTACGAAGctagaaaaagagggaaagtgaTCTGTTCACACAAGgaagaa
gacatGTGCCAGGAACAGTAGATGTTCGCGGATATCTCGGAGGCGATCCG
CGCGCTGGCAATCCAAATTGCTTCCATTCTGTTTGCAATTCTTGCTCGGC
TGAAGCCTCTCGCTTACTATGAACCTGCTTTTCAAGTCTTCGTGTATAAT
GTCAAAGCTTACGAAGctagaaaaagagggaaagtgaTCTGTTCACACAA
GgaagaagacatGTGCCAGGAACAGTAG
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Synonyms
Publications