rna2525, rna2525 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2525
Unique Name	rna2525
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1250
Alignment location	CM002459.1:583379..586482 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g169.9224.mrna
Orig protein id	gnl\|cribi\|Naga_100004g169.9224
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:583379..586482 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g169	gene2413	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2525	rna2525-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28293.1	cds2517	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:583379..586482+
coding sequence from alignment at CM002459.1:583379..586482+

mRNA sequence

>rna2525 ID=rna2525|Name=rna2525|organism=Nannochloropsis gaditana|type=mRNA|length=1250bp
CCCCCCTTTTTGGGGTGCCTTGTCCTAACAAGAGCGTGTTCCACACTTGT
GTCCATCCTGCAGGAGAAGCGGGTTGTGGCTCAACGGCCTGGCATTTCTT
CTACCATGGGACTCGACGTGAAGGAGAAAGCGCTCCTCACCTTCATTGCC
AAGGTGACTTTTCCGCTTGTCGTCGTTATGGGGCCTTTTATTGCATACAC
TCGTATTTGGGAACACCCCTTCTGGTTCTTGGGGCTTGTAACCTTCGCTG
TCTTAACAACGAAAGCACTGTACTACTTGCTCGAACGCCTCACGCGCAGG
CGGAAGGATCTGCCCAGAGAATATGGGAAGTGGGCCATCGTGACCGGCGC
CACATCGGGTATCGGGGAGGCTTTTGCACATGAGCTGGCTCAGCGTGGCA
TGAGTGTTCTTATTATTAGTCGCACGCCGGCCAAGCTAGAGAAGACCAAA
GCGGACATTTTGCGCAATGCTCCTGAAGGAGTGGAGGTGGAGGTGCTGGC
ATTCGACTTCACCTGCATGCCGAAAGCCGATGCTTTTTACCTGCGCTTGA
GAGAGGTGGCAGCATCGCTCCACAAGCGAGGTGGGATTGGTATGCTGATC
AATAACGTAGGCACGAACGTTGAGGTGCCGGAGTTCTTGCACGCTCTGCC
AGAAAGCGAAGTCCTGGACATCGTCCGCGTGAACGTGGAGGGTACAGTGC
GCATGACAAGGACGGTCCTTCCTTTCATGGCCGATCGTCGCGCCGGGGCC
ATCATCAACGTTTCATCGGGTTCGGGGAACCACCCTACCCCCCTCCTGTC
GACCTACGCAGCCACCAAGGCTTTCATCAACGAGTTCTCTCGGTCTCTCC
ATTACGAGGCGAAGCACGTTGGCATTGACGTCCTGGTCGCTACTCCGTAT
TATGTATCGACCCCAGGCATGTACAACAAACCACCCGGCTTGCTAAACTG
CTCGTCGCATCGATTTGTCCAAGACACCTTAAACGTCCTCGGCCGGTATG
ACTCGGTTTACCCTTACATCGCGCACGCCATCCTCGGTACCCTTATGGAC
AAATACTGGGCCACCCCAGCCGCTCTTTTCAAGTCCATGAACAAGACAAG
GATGCGTGCCCTCGCTAAGAGACAGCAGCAGAAAGAGGATTCGTCTTCGA
CCCAGAAAGCCGCCTACCGCCCTGCGGCCTAAGCTTGGCCCATATTGCAA
CTTGTACCATTTACATGTAACGTAAATCAAATAACCGAATTGTCAAAAAC

protein sequence of rna2525

>rna2525-protein ID=rna2525-protein|Name=rna2525|organism=Nannochloropsis gaditana|type=polypeptide|length=504bp
MKFLREEAKEQQRLERIRDVRVAQAKTLKALARRWRERVKDLGLPGRDMN
ELCRPFIDDVEEALTRARDLVLKEAHKIINLEEYFKRLQVSLQNVDAMMI
EAFQLLQLDEDARVLEAGITGLCRDLEKSGEDAVYDGTKYGNKCSTGSRM
GLVGVLPRFLDCPAPKAAYQQALSAASLLNTLRQSKDLDAGNKRVESFRV
ASRQLADTYRKLLRPAWEFYVILRKFELNFNRLWSSANLKQKEECSGVNV
ELPAALAHARAATKEAMHAACAKLQSFTETSETAKEELEDLLLRLKQTER
EAGRAICDQRKKERMQKEVRLRLAEEKILEKRIREREVRVKAQREESNML
KLERLERRRIFLETSLRIETSRERLGHLRKSSVLACRKRPHRLLSEKNDL
DTTQGCIAALGSKGSRAVVVAAGGTIEENERWKMADGADCPPCQFEFPGH
PLNLVSAEFREKIGRSSVERAEGQRDFREVGYAGYLHGEVFDPESKGKSA
KGLP

mRNA from alignment at CM002459.1:583379..586482+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2525 ID=rna2525|Name=rna2525|organism=Nannochloropsis gaditana|type=mRNA|length=3104bp|location=Sequence derived from alignment at CM002459.1:583379..586482+ (Nannochloropsis gaditana)
TTGCCCTTCTCCGTTGTATTTCAATGAGCATTTGCGAGAATGAGGTGCCT
TGAGGCTCAGTGAAGTCATTTTCCCGACAGTTTCCATCAGCTCTCCATGG
TCACGTCACAAGCGTAGGTCTTTTTTAGCCGGGAGGACAGACATGGTGAA
GATGATGCAGGGAATGAAGCGACAGCTTGCATTACTGCACATTGTCGCAT
GTAAATTGGAGTTCAAGGTCATCTCACCTGGCGGAAAGGCCTTAAGCTCC
TTTGATGTCAGAGAATGCGTCATGAAGGCCGTTGATATAGCACTCGGGAA
GCCATTATACATCGATGTGCATCTCGGCATCGATATCTCTACGGCGCAAG
TTGCGTATGCAAATGAACCGCCCGCTGATGCTTTACTGCGCGCACTGGAT
CAGCGACAGGTGATTTTGGGTCAATCTGTGAAAGTCAGAGTTAAAGccca
aagaagaagaacaaggagacTTTTGTCGtcgtggaaaggaggagaggaag
attttttagaggaaggcgaggtggATGTGGGCTTGCAGGAAGCGCGACAA
GGAAATAGATGTATTGGAAAAATCCCTGATACCTTGGTCTTGCGCAGGCT
ACCTTGTAAATGGTTCAGGATCACGGTCTCGGATGAACAAATACCATTAT
CATTTAGTCAAACCGCTTCGCTCCGCAAGCAGGTAGAGCAGCTTATAAAA
ACTGATCCTACACAAGTAGAAGCACTGCTACTGTCTGACGGTCTCTCTAT
GGATATCTACGTTCAATACGAGGGCAAGCAGGCCGAGATGGAGGGCGTTA
TCGCAAAACTGCAGAGCAAAGCACTCAGTTGTGAGCACTCGACTATAATA
TTGCCCCTTCTGGTTGACGTAGACCGCTCAGGCTTCTTCACTGAGGCTCA
AAAGAGAAATCGACGCGCTGCACACGAGCGAAAGCTCAAGGAATGACAGG
AGCTGAGAAAACAGTATCAGGAGCAGTCGCGGGAGCGGCAGGAGCTTCTG
GCCCTCCTTCAGACTCTGCTCTTGGAGAGTGGCGGAGAGGCGGTAGAAGG
CAGGGTCACAAGGTCCCTTCACAAAGAGTTGGAAGGAATTGGGACCAGAT
TAGTCGAAGCAGAGAAAGAACGAAAGTTGGCGGAGGGCCAAAGAAGGACG
TCGGTAATATCCGAAAagctgaagaagagcagCCTTGTGCTTGGCGAGTG
TCGTACGAGCCTGGCAAACATCCAGGGAGAGATGAAGTTCCTGCGAGAGG
AAGCCAAAGAACAGCAGCGGTTGGAGAGGATACGAGACGTGCGAGTTGCT
CAGGCCAAAACCCTGAAAGCTTTGGCCCGTCGCTGGCGGGAGAGAGTGAA
GGACTTGGGCCTCCCAGGGAGGGATATGAACGAGCTTTGTCGGCCTTTTA
TTGATGACGTTGAGGAGGCTCTGACCCGAGCCCGGGACCTTGTTTTGAAG
GAGGCCCACAAGATCATCAATCTGGAGGAGTACTTCAAGCGTTTGCAGGT
CTCTCTCCAGAATGTGGACGCGATGATGATCGAAGCCTTTCAACTACTAC
AACTCGATGAAGATGCACGAGTGTTGGAAGCAGGCATCACAGGCTTATGT
AGAGATTTGGAGAAAAGTGGTGAAGACGCGGTGTACGATGGGACCAAATA
TGGAAACAAGTGCAGCACGGGAAGCAGGATGGGACTGGTCGGAGTCCTTC
CACGCTTTTTGGACTGCCCCGCTCCCAAGGCGGCTTACCAGCAAGCTTTG
TCTGCTGCATCGCTTCTGAATACACTTCGGCAATCAAAAGACCTTGACGC
AGGAAATAAACGTGTGGAGAGCTTCCGAGTCGCGTCCCGACAGCTGGCTG
ATACTTATCGAAAACTTTTGCGCCCGGCGTGGGAATTTTATGTCATTTTG
CGCAAGTTTGAATTGAATTTTAATAGGCTTTGGAGTTCAGCCAATTTGAA
GCAGAAGGAAGAATGCAGTGGTGTGAATGTGGAGCTTCCCGCGGCACTTG
CGCACGCACGTGCGGCCACAAAGGAAGCTATGCATGCGGCATGTGCAAAG
CTGCAAAGCTTTACGGAGACGAGTGAGACTGCTAAAGAGGAGCTCGAGGA
TTTGCTGCTTCGTCTCAAGCAaacagagagggaggcaggtcgAGCGATTT
GCGAccaaagaaaaaaggaacGCATGCAAAAGGAGGTACGCCTGCGGCTT
GCGGAAGAGAAAATATTAGAAAAACGCATCAGGGAAAGAGAAGTTCGAGT
CAAGGCCCAAAGGGAGGAGTCCAACATGCTAAAACTGGAAAGgttggaaa
ggaggcgcATTTTTTTGGAGACCAGCCTTCGAATTGAAACGTCAAGAGAG
CGATTGGGGCACCTTAGAAAGTCTAGCGTCCTTGCATGTCGGAAAAGACC
ACACCGTCTTTTGTCCGAGAAAAATGATTTAGACACGACGCAGGGCTGCA
TTGCTGCCCTTGGATCGAAAGGCTCCAGGGCAGTGGTTGTTGCGGCGGGA
GGCACCATTGAAGAGAACGAGCGGTGGAAAATGGCTGACGGTGCCGATTG
TCCTCCATGCCAGTTCGAGTTCCCGGGGCACCCTCTTAACCTCGTGTCAG
CAGAGTTTAGGGAGAAAATTGGACGTTCGAGTGTAGAGAGAGCAGAAGGC
CAAAGGGATTTCAGGGAGGTAGGCTACGCCGGCTACTTGCACGGCGAGGT
ATTCGACCCGGAGTCAAAGGGGAAATCAGCCAAAGGTTTGCCCTAAAATA
GCGTGGAAGCTCGAATCAGCGCCTCTCAGCGCCCACGTCATGTCCAGAAA
GCTTTACAGGCATGCTCATCCACAGAGCTCTGTGACAACTTGCTCAATTG
GAACGCGTACAGTGATGCGAAGGAATGTCCATTTCAACATCCCTCACCGA
AGGAAGTACATAACCAAAAAAAGCTACTTAGCAAATATGAGGACATACGA
AAAAAATGCAGAGTAAAAAGGTGGTACGACCGTCGATTTGCAACACCGCT
CAATTGTAAGCGTTCATATACAGGGTGTGTCTTTCTTGATAGCTAATATG
CAGTCACCAAATAAACGAACATGTACAATGGCTTCCGTGAACTTGCACCA
TTTC

Coding sequence (CDS) from alignment at CM002459.1:583379..586482+

>rna2525 ID=rna2525|Name=rna2525|organism=Nannochloropsis gaditana|type=CDS|length=1515bp|location=Sequence derived from alignment at CM002459.1:583379..586482+ (Nannochloropsis gaditana)
ATGAAGTTCCTGCGAGAGGAAGCCAAAGAACAGCAGCGGTTGGAGAGGAT
ACGAGACGTGCGAGTTGCTCAGGCCAAAACCCTGAAAGCTTTGGCCCGTC
GCTGGCGGGAGAGAGTGAAGGACTTGGGCCTCCCAGGGAGGGATATGAAC
GAGCTTTGTCGGCCTTTTATTGATGACGTTGAGGAGGCTCTGACCCGAGC
CCGGGACCTTGTTTTGAAGGAGGCCCACAAGATCATCAATCTGGAGGAGT
ACTTCAAGCGTTTGCAGGTCTCTCTCCAGAATGTGGACGCGATGATGATC
GAAGCCTTTCAACTACTACAACTCGATGAAGATGCACGAGTGTTGGAAGC
AGGCATCACAGGCTTATGTAGAGATTTGGAGAAAAGTGGTGAAGACGCGG
TGTACGATGGGACCAAATATGGAAACAAGTGCAGCACGGGAAGCAGGATG
GGACTGGTCGGAGTCCTTCCACGCTTTTTGGACTGCCCCGCTCCCAAGGC
GGCTTACCAGCAAGCTTTGTCTGCTGCATCGCTTCTGAATACACTTCGGC
AATCAAAAGACCTTGACGCAGGAAATAAACGTGTGGAGAGCTTCCGAGTC
GCGTCCCGACAGCTGGCTGATACTTATCGAAAACTTTTGCGCCCGGCGTG
GGAATTTTATGTCATTTTGCGCAAGTTTGAATTGAATTTTAATAGGCTTT
GGAGTTCAGCCAATTTGAAGCAGAAGGAAGAATGCAGTGGTGTGAATGTG
GAGCTTCCCGCGGCACTTGCGCACGCACGTGCGGCCACAAAGGAAGCTAT
GCATGCGGCATGTGCAAAGCTGCAAAGCTTTACGGAGACGAGTGAGACTG
CTAAAGAGGAGCTCGAGGATTTGCTGCTTCGTCTCAAGCAaacagagagg
gaggcaggtcgAGCGATTTGCGAccaaagaaaaaaggaacGCATGCAAAA
GGAGGTACGCCTGCGGCTTGCGGAAGAGAAAATATTAGAAAAACGCATCA
GGGAAAGAGAAGTTCGAGTCAAGGCCCAAAGGGAGGAGTCCAACATGCTA
AAACTGGAAAGgttggaaaggaggcgcATTTTTTTGGAGACCAGCCTTCG
AATTGAAACGTCAAGAGAGCGATTGGGGCACCTTAGAAAGTCTAGCGTCC
TTGCATGTCGGAAAAGACCACACCGTCTTTTGTCCGAGAAAAATGATTTA
GACACGACGCAGGGCTGCATTGCTGCCCTTGGATCGAAAGGCTCCAGGGC
AGTGGTTGTTGCGGCGGGAGGCACCATTGAAGAGAACGAGCGGTGGAAAA
TGGCTGACGGTGCCGATTGTCCTCCATGCCAGTTCGAGTTCCCGGGGCAC
CCTCTTAACCTCGTGTCAGCAGAGTTTAGGGAGAAAATTGGACGTTCGAG
TGTAGAGAGAGCAGAAGGCCAAAGGGATTTCAGGGAGGTAGGCTACGCCG
GCTACTTGCACGGCGAGGTATTCGACCCGGAGTCAAAGGGGAAATCAGCC
AAAGGTTTGCCCTAA

Synonyms

Publications