rna2524, rna2524 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2524
Unique Name	rna2524
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2162
Alignment location	CM002459.1:581793..583209 +

Link to JBrowse

Properties


Property Name	Value
Product	estradiol 17-beta-dehydrogenase 12-b
Orig transcript id	gnl\|cribi\|Naga_100004g168.9157.mrna
Orig protein id	gnl\|cribi\|Naga_100004g168.9157
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:581793..583209 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g168	gene2412	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2524	rna2524-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28226.1	cds2516	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:581793..583209+
coding sequence from alignment at CM002459.1:581793..583209+

mRNA sequence

>rna2524 ID=rna2524|Name=rna2524|organism=Nannochloropsis gaditana|type=mRNA|length=2162bp
TCGAATTCAAAATTTCGGCGAGGCGGGGACGAGGCAGGAGGTCGCCCGCC
ACTACCCTGCCGCGACCACGGACACGACGACACAAGCACAAGGGCCACAC
CGGCCGACGGATGGTTCATCAATGATTCTGTTTGAGAGTTGGCAGACGGG
CGGCTTTATCGGGTCAGCGCACTATATTATGCGCGAAGGCGAAAATCCGC
TCGAGTTGCTGGCGGGGAGCCCTTTGCGCTTCACATCGTAGACTACCCAT
ATCTGATGACACAGTTATATGAAATTGAGCCATCTCTTTTGACATCTAAC
ATAGGTTGCACAATCAGTGTCACGAAAGCGATGGGTCAGCTAGCCATCAC
ATATCTTTTCGCGCTGCTTGTCGCCAAACAAAGTGTGCAGGCATTCGTGC
CTCGCTTCAAGGGTTCAGGGCCTGCAATAGTAACTCAACCCAGCGCAAGG
TTTTTGGGCCCGAAGGCAATGCCTGTCACGAGAAGCAGACGTGAAGGACT
GGACCTGGTGATGTCGCTGTCGGAAGCAAGTGCCAAAAGTACCAAGGTTG
GAGAGGCCGAAACAGAAGTGGAATCGGCTGATCACCGACAGTCTAATCAA
AAAGCGATTCGGGTCATCATGAAGTTTGGCGGTAGCTCTTTGGCCAATGC
AGAACGCGTTGACTACGTGGCTTCGTTGATTAAATCTCAAATAGAGCAGG
GGTATAGGCCGACTGTCGTTTGCTCAGCGATGGGCAAAACGACAAACAAC
TTACTGAATGCAGGCCATTTTGCGCTCGAAGGGAGTGTCTACATTGATTC
CCTGAGGACTTTGCATCTGAGCACAGCGCAAGAGCTGGGCATGGGCGACG
AAGTTCTGGCGGCCTTGGAGGAGCTGCTGGACGAGTTGAAAAATTTGCTC
AGTGGCGTGTCGTGCCTGCGTGAACTAACGCCGCGCACACTCGACTACCT
GGTATCCTTCGGAGAGCGCCTTTCTGTGCGAATTGTTGCGGCTCGACTCA
ACCAGCTTGGCGTGCCAGCACAGCACTTTGAGTCTTGGAGCTTGGGGCTC
CGAACCAACAGCGATTTCGGAAAAGCAGAGATCTTGCCAGAAAGCTACAG
CGCCATCAAAGAGGCCATGAAAAAGCTTGACGACTCCATGGTGGCCGTAG
TGACGGGCTTCATTGGCCATGATAGCGAAGGCCGCATTACCACACTCGGG
CGCGGGGGTTCAGATCTGACTGCTTCGACGATCGGCGCAGCCGTACCTGT
GGACGAGATCCAGGTCTGGAAGGATGTGAATGGAATCATGACAGCTAACC
CAAAGGTTGTCTCGAACGCTGTGCCTGTGCCCTTCGTTTCTTTTGAGGAA
GCATCGGAACTAGCCTATTTCGGTGCCGAGATCTTGCATCCTATCAGCAT
GGTGCCGGCAATGCGCTACAACATCCAGGTGCGAGTCAAGAACTCGTACA
ACCCCGACCACCCGGGAACAGTCATTCTGGCGGACAAGGATTACACCCAG
TTGGTCACGGCCATCACAAGCAAACGAAATGTTGAACTGCTTGATATTGT
CAGCACCTGGATGCTGGGCCAATATGGCTTCCTCAGTCGAGTCTTTTCTA
TCTTTGAGGAGCAAAAGGTTTCGGTGGACTGTGTTGCCACAAGTGAGGTT
TCTATATCTTTGACTCTTGATACTAAAAAGCAAGACGATCACGCAGAGGA
TCGCCTTGTGAAGGCACTAAGTGAAATTGCCGCCGTCACTGTGCATCGTG
ATCGCGCTATAATTTCTCTCATAGCGAATGTGGCGCGGTCCTCGGAGGTA
TTGTCCATCGTCTTTAATGCACTTAAAGAAGCTGGCATTCAAGTCGAAAT
GCTTTCGCAGGGTGCCAGTAAAGTAAATATAAGCCTTATTGTCAAAGATG
AGGACGCTGAGCGCTGCACACAAATTTTGCATGATCGATTTTTCGGTGAA
TCATCAGCCGTTGGAGGGGTATAGGAAGGTTATAGGTTTTACCGGATTTT
TGCGAAAATGGAAGTTCGGAACATATAAAATTTGCCATTGCATGTAAGAA
AACTGACGCACACGCATAGCACAAACACGGCGTCAATACGTGGGTGTGGT
TGCACATAACGATGAGGCTTAACCGGCATCATGAATGAAAATACCTCCGC
AACGTCTGAGAA

protein sequence of rna2524

>rna2524-protein ID=rna2524-protein|Name=rna2524|organism=Nannochloropsis gaditana|type=polypeptide|length=358bp
MGLDVKEKALLTFIAKVTFPLVVVMGPFIAYTRIWEHPFWFLGLVTFAVL
TTKALYYLLERLTRRRKDLPREYGKWAIVTGATSGIGEAFAHELAQRGMS
VLIISRTPAKLEKTKADILRNAPEGVEVEVLAFDFTCMPKADAFYLRLRE
VAASLHKRGGIGMLINNVGTNVEVPEFLHALPESEVLDIVRVNVEGTVRM
TRTVLPFMADRRAGAIINVSSGSGNHPTPLLSTYAATKAFINEFSRSLHY
EAKHVGIDVLVATPYYVSTPGMYNKPPGLLNCSSHRFVQDTLNVLGRYDS
VYPYIAHAILGTLMDKYWATPAALFKSMNKTRMRALAKRQQQKEDSSSTQ
KAAYRPAA

mRNA from alignment at CM002459.1:581793..583209+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2524 ID=rna2524|Name=rna2524|organism=Nannochloropsis gaditana|type=mRNA|length=1417bp|location=Sequence derived from alignment at CM002459.1:581793..583209+ (Nannochloropsis gaditana)
cccccctttttggGGTGCCTTGTCCTAACAAGAGCGTGTTCCACACTTGT
GTCCATCctgcaggagaagcgggtTGTGGCTCAACGGCCTGGCATTTCTT
CTACCATGGGACTCgacgtgaaggagaaagcgctCCTCACCTTCATTGCC
AAGGTGACTTTTCCGCTTGTCGTCGTTATGGGGCCTTTTATTGCATACAC
TCGTATTTGGGAACACCCCTTCTGGTTCTTGGGGCTTGTAACCTTCGCTG
TCTTAACAACGAAAGCACTGTACTACTTGCTCGAACGCCTCACGCGCAGG
CGGAAGGATCTGCCCAGAGAATATGGGAAGTGGGCCATCGTGACCGGCGC
CACATCGGGTATCGGGGAGGCTTTTGCACATGAGCTGGCTCAGCGTGGCA
TGAGTGTTCTTATTATTAGTCGCACGCCGGCCAAGCTAGAGAAGACCAAA
GCGGACATTTTGCGCAATGCTCCTGAAggagtggaggtggaggtgctggc
aTTCGACTTCACCTGCATGCCGAAAGCCGATGCTTTTTACCTGCGCTTGA
GAGAGGTGGCAGCATCGCTCCACAAGCGAGGTGGGATTGGTATGCTGATC
AATAACGTAGGCACGAACGTTGAGGTGCCGGAGTTCTTGCACGCTCTGCC
AGAAAGCGAAGTCCTGGACATCGTCCGCGTGAACGTGGAGGGTACAGTGC
GCATGACAAGGACGGTCCTTCCTTTCATGGCCGATCGGTACGTTTAGTCG
ATAAGGCTGGGCATTTCTATGTTTCTTGCATGCGTTTGAGATCCCGAGAA
AGCCGTCCTCGATATGTTTGCACATGTGTCGTCATTCCAATTCTGTGACG
GGATTTTCTCTGCTTCGTGATAACACGTCCGTCAACACACCGCGAATGAC
ACAGTCGCGCCGGGGCCATCATCAACGTTTCATCGGGTTCGGGGAACCAC
CCTACCCCCCTCCTGTCGACCTACGCAGCCACCAAGGCTTTCATCAACGA
GTTCTCTCGGTCTCTCCATTACGAGGCGAAGCACGTTGGCATTGACGTCC
TGGTCGCTACTCCGTATTATGTATCGACCCCAGGCATGTACAACAAACCA
CCCGGCTTGCTAAACTGCTCGTCGCATCGATTTGTCCAAGACACCTTAAA
CGTCCTCGGCCGGTATGACTCGGTTTACCCTTACATCGCGCACGCCATCC
TCGGTACCCTTATGGACAAATACTGGGCCACCCCAGCCGCTCTTTTCAAG
TCCATGAACAAGACAAGGATGCGTGCCCTCGCTAAGAGACAGCAGCAGAA
AGAGGATTCGTCTTCGACCCAGAAAGCCGCCTACCGCCCTGCGGCCTAAG
CTTGGCCCATATTGCAACTTGTACCATTTACATGTAACGTAAATCAAATA
ACCGAATTGTCAAAAAC

Coding sequence (CDS) from alignment at CM002459.1:581793..583209+

>rna2524 ID=rna2524|Name=rna2524|organism=Nannochloropsis gaditana|type=CDS|length=2154bp|location=Sequence derived from alignment at CM002459.1:581793..583209+ (Nannochloropsis gaditana)
ATGGGACTCgacgtgaaggagaaagcgctCCTCACCTTCATTGCCAAGGT
GACTTTTCCGCTTGTCGTCGTTATGGGGCCTTTTATTGCATACACTCGTA
TTTGGGAACACCCCTTCTGGTTCTTGGGGCTTGTAACCTTCGCTGTCTTA
ACAACGAAAGCACTGTACTACTTGCTCGAACGCCTCACGCGCAGGCGGAA
GGATCTGCCCAGAGAATATGGGAAGTGGGCCATCGTGACCGGCGCCACAT
CGGGTATCGGGGAGGCTTTTGCACATGAGCTGGCTCAGCGTGGCATGAGT
GTTCTTATTATTAGTCGCACGCCGGCCAAGCTAGAGAAGACCAAAGCGGA
CATTTTGCGCAATGCTCCTGAAggagtggaggtggaggtgctggcaTTCG
ACTTCACCTGCATGCCGAAAGCCGATGCTTTTTACCTGCGCTTGAGAGAG
GTGGCAGCATCGCTCCACAAGCGAGGTGGGATTGGTATGCTGATCAATAA
CGTAGGCACGAACGTTGAGGTGCCGGAGTTCTTGCACGCTCTGCCAGAAA
GCGAAGTCCTGGACATCGTCCGCGTGAACGTGGAGGGTACAGTGCGCATG
ACAAGGACGGTCCTTCCTTTCATGGCCGATCGTCGCGCCGGGGCCATCAT
CAACGTTTCATCGGGTTCGGGGAACCACCCTACCCCCCTCCTGTCGACCT
ACGCAGCCACCAAGGCTTTCATCAACGAGTTCTCTCGGTCTCTCCATTAC
GAGGCGAAGCACGTTGGCATTGACGTCCTGGTCGCTACTCCGTATTATGT
ATCGACCCCAGGCATGTACAACAAACCACCCGGCTTGCTAAACTGCTCGT
CGCATCGATTTGTCCAAGACACCTTAAACGTCCTCGGCCGGTATGACTCG
GTTTACCCTTACATCGCGCACGCCATCCTCGGTACCCTTATGGACAAATA
CTGGGCCACCCCAGCCGCTCTTTTCAAGTCCATGAACAAGACAAGGATGC
GTGCCCTCGCTAAGAGACAGCAGCAGAAAGAGGATTCGTCTTCGACCCAG
AAAGCCGCCTACCGCCCTGCGGCCTAAATGGGACTCgacgtgaaggagaa
agcgctCCTCACCTTCATTGCCAAGGTGACTTTTCCGCTTGTCGTCGTTA
TGGGGCCTTTTATTGCATACACTCGTATTTGGGAACACCCCTTCTGGTTC
TTGGGGCTTGTAACCTTCGCTGTCTTAACAACGAAAGCACTGTACTACTT
GCTCGAACGCCTCACGCGCAGGCGGAAGGATCTGCCCAGAGAATATGGGA
AGTGGGCCATCGTGACCGGCGCCACATCGGGTATCGGGGAGGCTTTTGCA
CATGAGCTGGCTCAGCGTGGCATGAGTGTTCTTATTATTAGTCGCACGCC
GGCCAAGCTAGAGAAGACCAAAGCGGACATTTTGCGCAATGCTCCTGAAg
gagtggaggtggaggtgctggcaTTCGACTTCACCTGCATGCCGAAAGCC
GATGCTTTTTACCTGCGCTTGAGAGAGGTGGCAGCATCGCTCCACAAGCG
AGGTGGGATTGGTATGCTGATCAATAACGTAGGCACGAACGTTGAGGTGC
CGGAGTTCTTGCACGCTCTGCCAGAAAGCGAAGTCCTGGACATCGTCCGC
GTGAACGTGGAGGGTACAGTGCGCATGACAAGGACGGTCCTTCCTTTCAT
GGCCGATCGTCGCGCCGGGGCCATCATCAACGTTTCATCGGGTTCGGGGA
ACCACCCTACCCCCCTCCTGTCGACCTACGCAGCCACCAAGGCTTTCATC
AACGAGTTCTCTCGGTCTCTCCATTACGAGGCGAAGCACGTTGGCATTGA
CGTCCTGGTCGCTACTCCGTATTATGTATCGACCCCAGGCATGTACAACA
AACCACCCGGCTTGCTAAACTGCTCGTCGCATCGATTTGTCCAAGACACC
TTAAACGTCCTCGGCCGGTATGACTCGGTTTACCCTTACATCGCGCACGC
CATCCTCGGTACCCTTATGGACAAATACTGGGCCACCCCAGCCGCTCTTT
TCAAGTCCATGAACAAGACAAGGATGCGTGCCCTCGCTAAGAGACAGCAG
CAGAAAGAGGATTCGTCTTCGACCCAGAAAGCCGCCTACCGCCCTGCGGC
CTAA

Synonyms

Publications