rna2519, rna2519 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2519
Unique Name	rna2519
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4278
Alignment location	CM002459.1:569028..569612 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g163.9185.mrna
Orig protein id	gnl\|cribi\|Naga_100004g163.9185
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:569028..569612 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g163	gene2407	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2519	rna2519-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28254.1	cds2511	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:569028..569612-
coding sequence from alignment at CM002459.1:569028..569612-

mRNA sequence

>rna2519 ID=rna2519|Name=rna2519|organism=Nannochloropsis gaditana|type=mRNA|length=4278bp
CTCCTTTTGTAACGGGGCTGAAACTCTTCGTGGCAAGAGCATACTAGGCC
TCATTGAGACTTGTCAATTCTCAAGAATCTTTTTATATGAATTGAGGACG
TGTTTGGTTGATTGACGGCTTCATTGAAGTACTTCTGGTCGCGCAGTAGC
TCTCCCGCGCTTTTAAAGTGGCCCTTCGATCATCGCGGCTCAGCCGATGA
GACCTTGCCGCCCTTTTATGAATTGAGGTCAGGACGCCCACGCCAACACT
ATCCTAACTTATCATAGGCGCCGCTGACTAAGCGTGGCATAGCAAAGAAA
GGCTGCCGCCATCGCTTTGATGGCAAAGCAAGTCTGAGCTACTGTTTTTT
CCCCTTCAGGAGGCTTCATCATTCCTCTCCTCGACCGCGACGGGGCCCTA
ATTTCAGTTTTAAGCTCTCGATCGAAATTCGACGTTTGAGGTAACCATCT
TTATCTAACCTGCACCATCTCTGGAAACTCATTTGTGTGAAGCGCGTGGA
ATATGGTAACGAAGAGAAGAGATGGATGTCCTGGAGGTCGCTGCGGTGGT
TTTGGGCTTGTTGTTGCCCTTTTCTTCTGTCTCCTCCCCGCCTCGCCAGC
TTCCGGGCTGAGTCTGCGGCCGCCGGCCTCCACATCATCCGTCACGGATG
ACTTATACAGCTTTGGAAGAGCAGCGAAGCCGTTTCACCGTGCATCGGGA
GACAGTGGCGGAAAAGCTAATCGAAAGCGGCAAAAGGAGCAACTGTATGA
GGCTTACAACCTGCTGCATAGCCTAGCCCAAGACTTTCAGAAGCCTTTCG
ACGCTACAGCTATCCTTATCGTTGGGCAGCAAACAGGCGGCAAGAGCGCA
CTCATCGAGGCGCTCATGGGCTTTCAGTTCAACCAAGTGGGAGGTGGCAC
CAAAACGCGGCGGCCCATTGCCCTGCGCATGCAGTACAATCCGCGCTGCA
GCCAGCCTCATTGCTTTTTGACTTTGGATAACGGGAAAGAAGAGGCTCGT
TCGCTTAAGGAGATCCAGCAATATATCGAAGGCGAGAATAAACGCCTCGA
GAACGATGAACTGCGATGTTTCGACCCGCGTGAGATCATGGTACGAGTCG
AGTACCGATTCTGTCCCAACATGATCGTCATCGATACTCCAGGCCTCCTG
AGCGCGCCTGCCAAACTCCGGCACATGAACGAGCAGCAGAGACAGCTACA
CCAGGCAGCGAAGGAAGCCGAGCACCTCGTTTTAGAGAAAATGAAATGCC
AAGACTATCTCATTCTCTGCGTGGAGGACACCACAGACTGGAAGCACTCA
ACCACCCGAAACATCGTCATGCAAGCGGATCCTGACCTCCGTCGAACTGT
CCTGGTCACCACCAAGTTTGATACCAAGCTTCCCCAATTCGGGACGAGCG
AGGATTTGGAGGACTTTCTGCGGGCACCCTTGATCCAGAAACTCTACCCT
CAGATGCTAGGGGGCCCATTTTACACCAGTGTACCCTGTGGCCGTGTCGG
TATGGGTAAGGATTCCGCTTTCATTAGCAACGAGGTCTTCGTGGAGGCCG
TCAAGAAAGTGGAGAAGTATGACCATGCCCGCATCGAGGCACGTTTGGGG
AGTGTCGGCGCAGCTCCCTTACTCCAACGCGTCGGTGTCAGTCGACTCAG
GCGCTTCCTTGAAAAGCGTGTTGAGGAGTGCTATCGCCGAAACGTTGCCA
AGATTGTCCCCCTCTTGCAGGGGGAGTTAAGATCAGCTGAAATGAAGCTC
GGACAGACCAATCAAGAACTTGAGGCCCTTTCGATGGATTTTTTGAAGAA
AACCGCCAATCAATTCCGCGAGTTTTTCCTGCGTTCGCTCGGACTAGTAA
TCCAGGGAACTATCCAGGCCTCTCCCGCACAGTACGGAGAGACCCTAGAG
ACAGAGCAGTTGCGCGGAGGCTCCTTTCTGGATGCGAAAGATGTCCCGGC
CGAACGCTGGGAGCGAATTATGGACGAGGAAGTTGGAAATGCGCATCATC
GGCTGTTTGGTGGCGCTCAGTACCACCGAGCCCTCAGAGAATTTACCTTG
GCAGTTCGCCTCATGAAGACTCCCACCATTACCGAAGATGAGATTGCCAA
CGCGGCCGGCGTCGGAGATATGCACGATGGCGTCAATTTTATGCGCGCAG
CTTGCGTGATTGCCGTGGAGAAGGCACGGAGTTCGTTTGAGCCGCTATTG
GAAGCTCTCCGGCACCGCACGACGCACATCATGAAGCGTCTGTACCCCAT
AACCGAATTTATGCTCCAGCGGAATGGAAAGGGACTTGAAGAGACCCACC
ATCGGCCATTCCAGGAGATAGTACGTCGTATTTATGAAAACTTCGTTTAC
AAAACGGTAGATGATTGTCTTGTGCGATGTCGGGATGACCTCAAGGCCCT
CACGCGTTTCGTCACGTGGGATCTACATGAGCGTAGTGCAGGAGCTCTAC
AGCGTTCTCTTCCTCAGAGTAATCTGATCCAGGTCTACACGATGCAAACT
GTGGCGGCATCTGCGCCCTCCTCGCGGCGAGCTGATAAAGCTCACAAAGC
GGCGCATCAGCAGCAGCAAGGATTCGGAGTGGGCGTCGGCAAGCAGGGTT
TGGACCACTGGGAGGAGGCCACCGCTCTTTCTCCCAGCGGCTCCGATGGA
TTCAACCAAGACAATCGTGATTTGCTGCAGCTCATGGAAGAAGCGGCCTG
TGTGCGCAATTCAAATCGAACCAATGCTGTCGTGTCGGCGTTGGTGCAGC
ACATAATTCGCTCGTGGCGCGAGCATTTCGCCCGTTCGGTGGCGATGAAA
TTTAATTGCTTCTTCCTGATGCCTTTTATTGACGAATTCCCTTTCTACTT
ACGTCAAGAACTTGACCGCGTCTACGAGGGTGACATGGCTAATTTATTTG
ACATCTCGGAGCTCAAATCGGCGCTCAAAAGGAAGCGTGATGACCTGATT
GCTGAATGTAAGGCCAACGAGCGCCTACAAGGCAAGTTTGACGTGATCGA
TAGTCAACTGCGCGCATCCAAGGTCGCGCTAGAAGACATGGACACAGATG
AGGACGCCGAAGATGTGCTTATCGGTGGAGGAAATGCGTCAGGTGGTATA
GGGATGCCCTCTGGTCAAGGTTACACCTATGAACAGGCGATAGAAGAAGA
TCTAGTGGCCACCGACTTGGACGAGTTTGAGTCGGAAACAGACTTGGACG
GCGACACCTTTGACTTCGGCGTGTCCACCAGTGGTGGCATGGGAAGTTCA
CGGAAATTCGAGGATGAAATGGAGGACATCTTGGGTCCCGTGCCACCACC
ACCTGGTAAATCGAACAGGAAGCTGTGAGGCGGGAGGGCAATAACAAGAC
TGAAGGAGCAAAGCAAGACCCTCGGGCCTTAAGTGATGACCCACTGTACA
AATGCCCCGTCTGAAAAAGCACGACCGACTGGACGGGCCCGGGTAAATGA
TTTGCGATTGTCTGTGTTTTTGTTTGCGTATATGGCAGGCTCTGTCAGAG
AGATGATAAGGGCTAAAAGTCTCTTGTGCCCGACGCCCGCGATTCCATCC
TTTCTACTGTGCGACGTAAGTTGCTTCCGAAGGACTTCTATTCCCCTGAT
TCTTTCCTAAAACTTGTTTAAAATGACCACGAGCGTACAAGCGGATGGCA
TAGAATGAGTATGGAAAGGAGGGATGGGAAAGTGAAAGAAGTGAGCATCC
GCTAGTACTTTAGAGAGAGAGAACGCGATCAAAAACTATAGAGATAATAA
GAGAGTCCGACAGGAGAATGCAAGGTAGAGAGCAGGCTTGCTGATGTCTA
TCCACACTGACGATGGGAGGCACATTACACATTTTTAAAGAGATATGTCG
CCGACCTCGTCATCGTTCAGGCGAAATTTCATTAATCTGATGCAACTCCG
CATCCATTTCTTTCTTCCTCAGCTTCCCCTTAAAAACATTTTAAACGAAA
AAGCAAGGGGGGGATCCCTTGAAACCACAAAGCAACAAGCTGAGCATGAT
CAGACATTCTGTCTGAAAACATGGATGAGCCACAAGCTTGTCGATTACTT
TTACTCGCAGCCGCTTTATATAGAGAGTGACGTGTTGCCAACCCTGAGCG
ATACTGCTCTCGCTACGCTTAAATTTCGAACGCCTCCGCACTCCTCCCCC
TCCCCGGTGCCCTATTCCCGGACGATACGCGCAAGGGGAGGAAAGGGGGG
GGGGGTGCGAAATGGAAGAGAGGGAGAAAGCTCCGTATTACCGAAAACAA
AGAACTGAGTAATACTTAATCTGGAAAA

protein sequence of rna2519

>rna2519-protein ID=rna2519-protein|Name=rna2519|organism=Nannochloropsis gaditana|type=polypeptide|length=78bp
MKLKPAPFPTSSPSARAPKKFCDDKPILSCILLPYDAYLESYFVSRFVYV
IEESPFTDSQPLRSYVLEDSHLRVVCSG

mRNA from alignment at CM002459.1:569028..569612-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2519 ID=rna2519|Name=rna2519|organism=Nannochloropsis gaditana|type=mRNA|length=585bp|location=Sequence derived from alignment at CM002459.1:569028..569612- (Nannochloropsis gaditana)
ATGAAGTGCGCGAAAGAGAGCTGCTGAAAATCGAAATTCTTACATCATGA
CGATCACACGAATATAACTTCGAAATTTATTGAGAAGTCCTGGCTCGGCG
TGGACCAAAGTGAAGGGCAGCACGAGGAAATAGCCCGCAGAAAGTCGCTC
GCCGGCGGAGCTTCCTCGTCGCCGTCTCCGCGCCCCTCGCCGTTCCCCCC
GACGTGCCTCACAACCCCACAGATTAAAGCCTGCTCCCTTTCCCACCTCC
TCCCCCTCCGCGAGAGCCCCGAAAAAATTTTGCGACGGTACCGTACACTC
TTTTCTCTACAGAGCTCAGACTGGTCTGACGCGTGGTGTGTAGGAAGGAT
GCTCGAGCAACAGCCTGGGTGAGAGGGAGGAGGAGGTTGGCAAAACAAGT
TTTCCCCAACGCCCTTAGATAAGCCAATATTGTCTTGTATCCTGCTTCCG
TATGATGCATATCTAGAGTCATATTTTGTTTCGCGGTTTGTTTATGTAAT
CGAGGAATCACCTTTTACTGACTCCCAACCGCTGCGGAGCTATGTCCTGG
AAGACAGCCATCTGCGGGTCGTGTGCTCTGGTTAA

Coding sequence (CDS) from alignment at CM002459.1:569028..569612-

>rna2519 ID=rna2519|Name=rna2519|organism=Nannochloropsis gaditana|type=CDS|length=711bp|location=Sequence derived from alignment at CM002459.1:569028..569612- (Nannochloropsis gaditana)
ATAAGCCAATATTGTCTTGTATCCTGCTTCCGTATGATGCATATCTAGAG
TCATATTTTGTTTCGCGGTTTGTTTATGTAATCGAGGAATCACCTTTTAC
TGACTCCCAACCGCTGCGGAGCTATGTCCTGGAAGACAGCCATCTGCGGG
TCGTGTGCTCTGGTTAAATTAAAGCCTGCTCCCTTTCCCACCTCCTCCCC
CTCCGCGAGAGCCCCGAAAAAATTTTGCGACGATGAAATAAGCCAATATT
GTCTTGTATCCTGCTTCCGTATGATGCATATCTAGAGTCATATTTTGTTT
CGCGGTTTGTTTATGTAATCGAGGAATCACCTTTTACTGACTCCCAACCG
CTGCGGAGCTATGTCCTGGAAGACAGCCATCTGCGGGTCGTGTGCTCTGG
TTAAATTAAAGCCTGCTCCCTTTCCCACCTCCTCCCCCTCCGCGAGAGCC
CCGAAAAAATTTTGCGACGATGAAATAAGCCAATATTGTCTTGTATCCTG
CTTCCGTATGATGCATATCTAGAGTCATATTTTGTTTCGCGGTTTGTTTA
TGTAATCGAGGAATCACCTTTTACTGACTCCCAACCGCTGCGGAGCTATG
TCCTGGAAGACAGCCATCTGCGGGTCGTGTGCTCTGGTTAAATTAAAGCC
TGCTCCCTTTCCCACCTCCTCCCCCTCCGCGAGAGCCCCGAAAAAATTTT
GCGACGATGAA

Synonyms

Publications