rna2512, rna2512 (mRNA) Nannochloropsis gaditana

Overview
Namerna2512
Unique Namerna2512
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1473
Alignment locationCM002459.1:553167..553799 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g155.9204.mrna
Orig protein idgnl|cribi|Naga_100004g155.9204
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:553167..553799 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g155gene2401Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28273.1cds2504Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2512rna2512-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2512 ID=rna2512|Name=rna2512|organism=Nannochloropsis gaditana|type=mRNA|length=1473bp
ATGTCTGGGGCTATGTCGTCCTTTTTTATTTTATCACCGCGCGGGGACAC
CATCATTAGTCGGGACTTCCGCGGAGATTCTTTGCCCAATGCAGCTGAGA
TCCTGTTTCGGAAGGTGAAGTTCTGGGACAAAGGAGACGCTCCTCCCGTA
TTTCACCTGGATGGCCTGAACTTCGTGTATGTGCGCAAAAATGGTTTACT
TTTTGGTGCTACAACGCGCTTTAATGTATCACCATCTACGACTGTCGAGC
TCTTGAATCGGATGGCCAAAGTCTTCAAAGATTATTGTGGCGTTCTGAGC
GAGGAATCGATTCGTAAGAATTTTATCCTCGTGTACGAATTACTGGACGA
AATGATGGATTTTGGCTATGCTCAGGCCACTTCGACGGAGAGCCTGAAGA
ACCATGTCTACAACGAGCCGATAGTCGTGGAATCCGCCAAGTCAAATTTA
CGCATGCCTAAAATTAATTCCAAGACAACACCTTCAACTGCGGTGCACAA
GCCAATCACTATATCTGCACAATCAGGCGGTAAACAAAAAAATGAAATAT
TCGTAGACATTCTAGAGCGTTTGAATGTCCTATTCTCCGGCAGTGGGTAC
ATTATAAACTCCACCATCGACGGGTGCATTCAAATGAAGAGCTACTTGTC
CGGCAATCCGGAGCTCAAGCTAGCCCTGAACAGCGATCTCGTCATCGGCA
AGGGTGGTGGTGGATACGGTGCGGTTGTGCTGGATGACTGCAACTTCCAT
GAGTGCGTCCGGCTTGACGAGTTCGAAAGCTCGCGGACTCTCTCCTTCTT
TCCCCCAGATGGAGAATTCATTCTGCTCAATTATCGGATAACGGGCGAAT
TTCGGGCTCCGTTTCGAATCTTTCCCACGGTTGACGAAGTTTCGCCGTAC
AAGGTGGAGATGACGCTGATGATTCGAGCCGACATACCAGAGTCGAACTA
CGGCGCCAACGTGCAAGTTCGAGTCCCCATGCCTCGTTCTGCCATCGCTG
TCACCACCGAGATAGCTCGGGGGGGGGGCGCAGGGTTAGCTTCAGGCGCC
TTGGCAACCTCGGGTCAGACGTCCGAGTACAACGCAAGTGAAAAGCGGGT
CGTTTGGAACATTAAAAAGTTTCCGGGCGCGACAGAGCAAACTTTAAGCA
TTAAAATTACACTAGCTGGAGGCGGAGTAGGTGGCAGCAGCACTAGCAGC
AGTGGCGGTAGTCTTGTTAACAGTGCCAGCACAGGGAGCATGAGTGCAGG
TGGAACGGCCCCCCCACCGGGCCAGCTTATTGGGAGTGCTCGGAAAGAGA
TAGGCCCCGTGAGTATGAGCTTCGAAATCCCCATGTACAATGTGTCAAAC
CTGCAAGTGCGATATCTAAGGATCTCGGAGCAGCAAAAGTCTTACAATCC
GTACAGATGGGTTCGCTACGTGACTCAGGCTTCCAGCTTTGTCTGTCGTG
TTGGCACCGGATCCGAAAGATGA
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protein sequence of rna2512

>rna2512-protein ID=rna2512-protein|Name=rna2512|organism=Nannochloropsis gaditana|type=polypeptide|length=210bp
MHPRHPSQNSLQLPSSNTFHSYSLHPSVYPRAQSVQHGVPLHPSSLPRGA
LPPQGAQAVLPNNNNPQTLMHYEHLRPVKTWVDSRRDSPWGKGSQRGGGR
AGKADASSVYGGNKGGRGRKRPYDGRDKLNHRTQAGEGDKQCVGYYRASF
LEDPWLPLMREEVRRRDRGLPAQGLSEAFDPGDEHKRGESKQSVEAGSVK
DEAEIELENL
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mRNA from alignment at CM002459.1:553167..553799-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2512 ID=rna2512|Name=rna2512|organism=Nannochloropsis gaditana|type=mRNA|length=633bp|location=Sequence derived from alignment at CM002459.1:553167..553799- (Nannochloropsis gaditana)
ATGCACCCCCGTCATCCGTCTCAAAACAGCCTTCAGCTCCCCTCGAGTAA
CACCTTCCACTCCTATTCATTGCATCCCTCGGTGTATCCGCGGGCCCAAA
GCGTGCAACATGGGGTCCCACTTCATCCATCGTCCTTACCGAGAGGCGCA
TTGCCGCCTCAAGGAGCTCAGGCCGTGCTTCCCAATAACAACAACCCGCA
AACATTGATGCACTATGAACACCTTAGGCCCGTGAAGACTTGGGTCGACT
CTCGACGAGACTCCCCATGGGGCAAAGGGTCACAGCGAGGTGGAGGAAGA
GCTGGCAAGGCTGATGCAAGCAGTGTTTATGGTGGTAATAAGGGAGGTCG
GGGCAGAAAACGGCCCTACGACGGACGAGACAAGCTCAATCACCGCACTC
AAGCGGGTGAAGGCGATAAGCAGTGCGTGGGATATTATAGAGCAAGCTTT
TTGGAAGATCCATGGCTGCCTTTGATGCGCGAAGAGGTGCGTAGGCGAGA
CCGGGGCCTCCCTGCGCAGGGCCTGTCTGAAGCCTTTGACCCTGGGGATG
AGCACAAGAGAGGGGAGAGTAAACAAAGTGTTGAGGCCGGAAGCGTAAAA
GATGAGGCAGAAATCGAGCTGGAAAATCTGTGA
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Coding sequence (CDS) from alignment at CM002459.1:553167..553799-

>rna2512 ID=rna2512|Name=rna2512|organism=Nannochloropsis gaditana|type=CDS|length=633bp|location=Sequence derived from alignment at CM002459.1:553167..553799- (Nannochloropsis gaditana)
ATGCACCCCCGTCATCCGTCTCAAAACAGCCTTCAGCTCCCCTCGAGTAA
CACCTTCCACTCCTATTCATTGCATCCCTCGGTGTATCCGCGGGCCCAAA
GCGTGCAACATGGGGTCCCACTTCATCCATCGTCCTTACCGAGAGGCGCA
TTGCCGCCTCAAGGAGCTCAGGCCGTGCTTCCCAATAACAACAACCCGCA
AACATTGATGCACTATGAACACCTTAGGCCCGTGAAGACTTGGGTCGACT
CTCGACGAGACTCCCCATGGGGCAAAGGGTCACAGCGAGGTGGAGGAAGA
GCTGGCAAGGCTGATGCAAGCAGTGTTTATGGTGGTAATAAGGGAGGTCG
GGGCAGAAAACGGCCCTACGACGGACGAGACAAGCTCAATCACCGCACTC
AAGCGGGTGAAGGCGATAAGCAGTGCGTGGGATATTATAGAGCAAGCTTT
TTGGAAGATCCATGGCTGCCTTTGATGCGCGAAGAGGTGCGTAGGCGAGA
CCGGGGCCTCCCTGCGCAGGGCCTGTCTGAAGCCTTTGACCCTGGGGATG
AGCACAAGAGAGGGGAGAGTAAACAAAGTGTTGAGGCCGGAAGCGTAAAA
GATGAGGCAGAAATCGAGCTGGAAAATCTGTGA
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Synonyms
Publications