rna251, rna251 (mRNA) Nannochloropsis gaditana

Overview
Namerna251
Unique Namerna251
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1536
Alignment locationCM002455.1:634079..634528 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100210g11.8073.mrna
Orig protein idgnl|cribi|Naga_100210g11.8073
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:634079..634528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100210g11gene240Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna251rna251-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30425.1cds251Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna251 ID=rna251|Name=rna251|organism=Nannochloropsis gaditana|type=mRNA|length=1536bp
CATCACATGCTCAGCCCTACAGATCAACCTCCCTGGAAAACGCACTTTGT
TCGTTCAACCATTTCAAAACCTCATGGTTTCGTGCCAAAAACACACCGCG
ATAGAGGTTCGAATATCTGCGGCGCCAAAGGAGAAGATCCCAGATGCAGC
GAGCCAAAGTCAAGAAAAAGCCCACCCAGCAGACTGTACCACTTTCATCA
TGTCCGTCTGAAACGAAAGCTATTTCAAACACGAAATTTTGGCATTTCGC
TATCATAGCCGCCCTTATGATCTCCCTTATTGTCACCACTGTAACTATTG
TCCCGCTAAATTGGCGCCAATTCGGCACACGGCATAATGCAATCTTCGAG
ACAAATGATTTCACCTTGGCCCATCTTCAAAATTGCGCTCAATCGGATGC
CGTATTAGAGCAGCCCCCAGAGCAACGACCACAAGAAGTACTTGCCTATA
CAACACCTTGGAATCGGCAAGGTTTTGCCGTTGCAGAGACTTACGCCCAC
AAGTTGACCTTTTTGAGTCCAGTATGGTATCAGCTGAGGGCACCCCAGCT
TCAGCGGAATGACTATGACGGGAGGGGTTTAGAATTGACAGGTGGACACG
AATTTAACAATACTTGGCTCCGTAATGTGCGCAATAAGTCCAAAAATCGT
GTGCGTATCGTACCCCGGGTCATATGGGAAGTTCCTGCATTTGTGCTGCC
CACCCAGGTACCCATTATTACCCAGCTCTTGGCAGAAGAGGCAAGGGACA
GAGGTTTTGACGGCTACACGCTTGAGTTTCCTGTCGACGAGCATGGCATC
TTCGCTGAACTTACAAGGTCCCTTAAGAATGCGCTCTCAGAGGCGATTCC
ACTCTTATCCTCCCCCACGCTCATCGTAGCCATTCCTGCCTTCCAGATGC
CCACGCGCCCCCAGACTCCTCCTGAATATCACGTCACACCCAGACTTCTT
CTCACCCTTGCGCCGCACGTGTCACGCTTTTCGCTCATGACGTACGACTA
CGCTCAGACACCCTCTGGCGCCCCGATTAGCCCTTTACCATGGGTAATGA
GGACAGTAGAGATGCTCTCTAATAGGGAAGGAGAGCAGGGGAAAGCGGAC
GCGAGGATCCTCCGGGGCAAAATGCTCTTGGGACTGCCCTGGTACGGGTA
TGCAGGTGGCCAGGCAATAACTGGGCATGAATTTCAAAAGAATGTCCTGG
ATAGGGCAGAGCACGTGCGGCGCGTGTGGTGGGACGAAGATACTCAGGAG
CACGTGTTTGTCTACTCGGCCTCACATGGCGAGGAGGCTGGCGAGGAGGT
CCGAGCCACGTACCCCACCCCCGCCTTCTTTAAAAGAAGATTCGCCTTAT
CACGGGAGCTGGGTTTGGCAGGCGTGGCAGTGTGGGAGGCAGGGCAGGGT
TTGGTGTGTTTCCCTATGTTGTGGTGACGGAAATCGAAATCAAGCTACAA
GATGATGCAACACGTGCAATCAGCGCATGAGGATACGATCTCGAAGCATT
GTATCCTTGAGAAACGTAACACTCTGTACATTGACT
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protein sequence of rna251

>rna251-protein ID=rna251-protein|Name=rna251|organism=Nannochloropsis gaditana|type=polypeptide|length=103bp
MKTFAIGSPTWDFIPMRCVVHQAYRRLKLNHTYHNIDFIVDLSYHFPSVL
PSWVFPCLSGFLLCENQWAYRLSSTTFQASGPCQRNKQAAPTWRHELIHP
SAR
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mRNA from alignment at CM002455.1:634079..634528+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna251 ID=rna251|Name=rna251|organism=Nannochloropsis gaditana|type=mRNA|length=450bp|location=Sequence derived from alignment at CM002455.1:634079..634528+ (Nannochloropsis gaditana)
ATGAAGACGTTCGCAATCGGGTCTCCGACGTGGGATTTCATCCCTATGAG
ATGTGTTGTCCACCAGGCTTATCGCAGGTTGAAGCTAAACCATACATACC
ACAATATTGATTTTATAGTTGAGTGCAACAAGCCGTGTCCTAACCGTTGA
CTTATTCTTCCCACaacgtcttcttccaacaCACGGGGCAGGCACCAGAG
CGCAGTTCTATCATGGCGTTCAGCATGGGCCGCTTGATGCGGAAATTCAT
TGACCGGGAGCCTGTCGTATCATTTTCCATCGGTATTGCCGTCCTGGGTC
TTTCCTTGCCTTTCTGGGTTCCTCCTCTGCGAGAATCAATGGGCTTACAG
ACTGAGCAGTACTACCTTCCAAGCGAGCGGTCCATGTCAAAGAAATAAAC
AAGCAGCACCCACGTGGAGGCATGAACTGATTCACCCGTCTGCTAGGTGA
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Coding sequence (CDS) from alignment at CM002455.1:634079..634528+

>rna251 ID=rna251|Name=rna251|organism=Nannochloropsis gaditana|type=CDS|length=624bp|location=Sequence derived from alignment at CM002455.1:634079..634528+ (Nannochloropsis gaditana)
ATGAAGACGTTCGCAATCGGGTCTCCGACGTGGGATTTCATCCCTATGAG
ATGTGTTGTCCACCAGGCTTATCGCAGGTTGAAGCTAAACCATACATACC
ACAATATTGATTTTATAGTTGACCTGTCGTATCATTTTCCATCGGTATTG
CCGTCCTGGGTCTTTCCTTGCCTTTCTGGGTTCCTCCTCTGCGAGAATCA
ATGGGCTTACAGACTGAGCAGTACTACCTTCCAAGCGAGCGGTCCATGTC
AAAGAAATAAACAAGCAGCACCCACGTGGAGGCATGAACTGATTCACCCG
TCTGCTAGGTGAATGAAGACGTTCGCAATCGGGTCTCCGACGTGGGATTT
CATCCCTATGAGATGTGTTGTCCACCAGGCTTATCGCAGGTTGAAGCTAA
ACCATACATACCACAATATTGATTTTATAGTTGACCTGTCGTATCATTTT
CCATCGGTATTGCCGTCCTGGGTCTTTCCTTGCCTTTCTGGGTTCCTCCT
CTGCGAGAATCAATGGGCTTACAGACTGAGCAGTACTACCTTCCAAGCGA
GCGGTCCATGTCAAAGAAATAAACAAGCAGCACCCACGTGGAGGCATGAA
CTGATTCACCCGTCTGCTAGGTGA
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Synonyms
Publications