rna2502, rna2502 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2502
Unique Name	rna2502
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1541
Alignment location	CM002459.1:530357..533712 -

Link to JBrowse

Properties


Property Name	Value
Product	3-deoxy-7-phosphoheptulonate synthase
Orig transcript id	gnl\|cribi\|Naga_100004g146.9213.mrna
Orig protein id	gnl\|cribi\|Naga_100004g146.9213
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:530357..533712 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g146	gene2392	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28282.1	cds2494	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2502	rna2502-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:530357..533712-
coding sequence from alignment at CM002459.1:530357..533712-

mRNA sequence

>rna2502 ID=rna2502|Name=rna2502|organism=Nannochloropsis gaditana|type=mRNA|length=1541bp
GGACCTTTTTATGTTCTGCAGGCTTTTCCGTCAGCACGTCAGCACTTTCG
TGACAGAACATGACAACCAGGCTGGGCGCAACAATGTTTGGTGCTGGAAC
GAGACGCTTGGCGCGGGAAAAATTGTATGACGTGAAGGCGAAATGGTTGA
AGCTCCAGACGAATTTCTCGAATTAAACAAGCTATCACAGACTCAATGCT
CTTATTTTCCCGGGGACTAGGTATGAGAGCAGTATGGACGGGCCTCTTCC
ACCCCAGACCATAGGTGCTCGTCTAAACGCATCCCACATCATTCGTGCTG
ATGGGCGGTCACGCGCTGTGCGAGTAGCAAATACGCACACCTGGAAGCAC
GGCTTCGATTCTTTTTTCGATTACATGGACAGAAGTTTCCCAAGGCGTCA
TGGAAGTGACATTGCTGAAATGGCTACTTGTAAAGAATCGTGGGATTTAA
ATGAATTTTAACGCAATCCCCGTAACGAGGTCGAAGAAGGTTTGGAACCG
CTGCCTTGTTACTTGAAGTCCATGACTCGTAAAATCTCTTTGAAAACTTC
CTCACTCCTGGTCGATAACAGTTAAATGTAAGTCTCGCCGATGGTGGAAG
ATCTGACCGTTAAATTTTAACCAAAAGAGATTGCAATTTCACTCAAGGGA
GCCGTCCTGTTGACGTCCCACGTCTGTAGCTCGTCTACGAACCCTAAGCA
GCCATCCGATGGAAGTGGAGCTCGTTGACCTAATTTCCCAGATAGCCTCC
ATTGTATGCAACCCAAAATTTGTGCGACCAATACCTGATCAGACTTTAGA
GGCGATTGAGAGAGTACCATCGGTGTCGCCGTCAAGTCCTCGATTCGTAT
GCAGCATCCCCCTCTCCGACAGCATTCCGCCGTCCCTACGTATCCCACAG
TACATAGCGAAACCCAGTGTTCGTCCCTTACCCATTCGTCTTCAATCGAG
CAAGACAATTATAAATGGCCAAGTAGCAAAAGTATCGCTGCACGGCATGA
GCAACCGTAGCCAGTATGTACCTTTATCAAACATATTTGTGGAGATAGTT
TCACTTGCTCGGTCTAGAACTGGTCGAAAACATTTTTGGCGCCACTCCAT
CAAATGGAGTTAAGTGGAAGCGTCCTAATCTTCGTTGGATTTTAACTTCA
GAGGAAGATTTACAGCCCGGACGAACACGCAGCTTTCTCGCCACCCTTCC
AATACTTGACTTTGCTCCAATTTGTGGAGGTGGTGAGAGTGATTCGCTAT
CCTCTTCGCAGTCGTCCACTGTGGTACTACCATGCAGCGCTGTTTTCCGT
GCTCAATCGAAAGCGGCACTTTTCAAGTGTACTGTCCGACTGTGCAACGT
TTGTGACACCGAGGGCTTACATCCCCAGATAGAGACCCAACAAAACGTTC
CAAAAATGTACCGACTCAGTGCACGGGCAGAATCCTGTGCAGATATCTGA
CGAGCTAAGGCCTTTTAAACACATAGAGAATTAGACATAACGTTGAAAAC
TCACAATCTCCACTTTGATCCTTGGGTGTGGCCAATTTTCG

protein sequence of rna2502

>rna2502-protein ID=rna2502-protein|Name=rna2502|organism=Nannochloropsis gaditana|type=polypeptide|length=305bp
MLDAYHQSTQTLNILRAFATGGYADISRLHAWNLDFVEKSEEGSRYRKLA
SKVDESLRFMKAIGVNTESATFKQAQFYTAHECLLLSYEQALTRQDSTTG
KWYDCSAHMLWIGERTRQLDGAHLEFTRGIGNPLGVKISDKITPEELLEV
IDNLNPNNIPGRLSLIVRMGADKLREKLPALIRAVQKEGRFVVWVSDPVH
GNTIKADNGLKTRPFEKIRDELRAFFDVHDQMGTHPGGVHLEMTGKDVTE
CIGGTIQDIKVDDLNKRYHTHCDPRLNGVQALELAFLIAERMRSRTGLPP
LFNDA

mRNA from alignment at CM002459.1:530357..533712-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2502 ID=rna2502|Name=rna2502|organism=Nannochloropsis gaditana|type=mRNA|length=3356bp|location=Sequence derived from alignment at CM002459.1:530357..533712- (Nannochloropsis gaditana)
CCCGTGTTCCGTTGATCTCTTCCCCAGCGCATCTCCCTTCTTCTAGGCGC
TCCAGTGTGCTACGCGGTATACTTACGGCTTGTAGAGAGTCATTGTTGAA
TGATGGCATGCACGACATCATATGTATTGCTTCCTTAGCCACCGGGCAGG
AACACTGTCATGAAGTGTTGCTTTGATTGCCTTGAGTGAAATGCTTGATT
GAATGGTGTTATGCATGCAATGATGTACATGAACTCTTACCTAGTGGAGT
CGAAATGCCATTTCGAGTTTTTTAATGGTACCTGTTCTTGTCCCCTTCCT
CGGCCGTTGGTCTCAGGTTGAATATCCACTGCTCACCAGTCGCTCTCTTT
ACTGCACGAAACGTCTCCAAGAGTTAATGAATGTCAAAATGTGTTCGTGG
CTGTCGGCTGCGAGCTTGGTCGCCGCACTGTTTTTCTTGGAGTTGGAGCA
AGGAAGGGCATTTCTTTCAATGGGAAATCCGAAACTGGTCAGGAGCGGTA
CCTCGGCGTGTGGACGTGTGCGTGGTTTTGTGAGCGCGGTGCAATCCGTG
CCGCCTCCTAGTACTGCAAGCATAATTTCTTCTTCGTCATCTTTGTCGCA
AAAGGCTCCTTGGTCGCCTGATTCCTGGCGCAAATTTACTCCACGCCAAA
TGCCTGTTTATGACGATGAGGTAAGCCATTACGAATCTGTCATCAAAAAT
AGCCGGTATTCGGAATTTTCGCATCAATGTAGTGATCTAACGCTGTGTCC
TCTTTTTTGATATTGAAAGGAGGAACTCGTGAAAGTAGAGCATGCACTGG
CTAAGTCGTCACCACTGGTGTTCGCAGGCGAGTGCCGTCAGCTTCACGAA
CACTTAGGTAAGAAAGAAATGCATGGCACAGCTTCCATGCTCGTGCACAT
GCAAAGCCCTATACGTTATCGCTGTCTGATGTCAAAGTTCGATGTGTTCC
CACTCGATTGCCATTGAGAAAAGCTTTTAACATTTTACTTATTGGATGAG
TAATGTCACCCCTCTCCGGCTGACAGCCAAAGCTGCCATGGGTCAGAGCT
TTTTGCTCATGGGTGGGGACTGCGCAGAAAGTTTTAAGGAATTTCATGTC
GATACTATCAGAGATACCTTTCGTGTGCTCCTGCAAATGGCACTGGTCCT
GACGTTCGGCGGGTCCATGCCCGTCATCAAGGTGGGCCGAATGGCCGGCC
AGTTCGCAAAGTAAGATGAGGTTGTGGTGAGACCAACGATGTCCCATAGG
AAAACATCTTCTTCTATAAAGCATACAACAACATCGAGCCTAGTCCATCT
TTGACAGTATTTGACTCATTCTCAATACCTGCCAGGCCTCGTTCGGAGCC
GCAGGAGGAGGTGAACGGCCTGAAATTGCCGAGCTACCGAGGAGACATAA
TCAACAGCGAGTCTTTTACTGAAGAAGCACGGCGCAACAATCCCTGGCGC
ATGCTCGATGCGTATCATCAGTCTACTCAAACGCTGAATATCCTCAGAGC
CTTCGCGACAGGTGGCTATGCCGACATCTCGCGCCTGCACGCCTGGAACC
TGGACTTTGTGGAAAAATCCGAGGAGGGCAGTCGGTATCGGAAACTGGCG
TCAAAAGTCGACGAGTCCTTACGATTTATGAAAGCTATCGGCGTAAATAC
GGAGTCTGCTACATTCAAACAGGCACAGTTTTACACTGCGCACGAATGCC
TCCTGCTTTCTTATGAGCAGGCGCTGACCCGTCAAGACTCCACGACTGGG
AAGTGGTACGACTGCTCGGCGCATATGCTTTGGATAGGAGAACGAACTCG
ACAGCTTGATGGGGCGCACTTGGAATTTACTCGCGGCATTGGGAATCCTC
TCGGTGTTAAGATTTCGGATAAGATTACCCCCGAAGAGCTTCTGGAGGTG
ATTGACAACTTAAACCCCAACAACATACCTGGCCGCCTCTCCCTCATTGT
GCGCATGGGCGCAGACAAGCTACGAGAAAAGCTTCCGGCACTTATACGAG
CTGTTCAAAAGGAGGGTCGCTTTGTGGTTTGGGTGTCAGACCCCGTGCAC
GGTAATACGATTAAGGCGGACAATGGTTTGAAGACACGACCCTTCGAGAA
GATTCGGGATGAATTACGAGCTTTCTTCGATGTTCACGACCAGATGGGCA
CGCATCCCGGCGGTGTGCATTTAGAGATGACAGGTAAAGACGTGACTGAG
TGCATCGGCGGTACCATCCAGGACATTAAAGTGGACGACCTAAACAAGCG
CTACCACACGCATTGCGACCCTCGTCTCAACGGCGTACAAGCTTTAGAGC
TGGCTTTTCTAATCGCTGAACGGATGCGTTCACGCACTGGACTTCCACCC
CTCTTCAACGACGCCTAAAATACCTGGAATTGAAATTCTCAAGTAGTAAG
CGGAATGTGTAGCCTGTTCGATTCTCGCGGAGGAACCCGCGATATACGAG
GAGGTTGATTGTGGGGACTCCAGTTACGCATGGTACTCTAATACATGCAC
CTACATGTTGAGCTTTTGGAAGGAGAAAGAGAACTTTAATCTAAAAGAAA
GGGAGGTAGAGGATGTGACTCTTAATATTCGATATTGTGTTTAAATAGTT
GATATTAAACGCAATTGTCGCGTAAGTTGAATGGCGACACCGATCTGAGG
AAGAACTCCCTTCTATCGTGTTCAGAAGTCACTATACATACATCTCTTCT
TATCTTCAGAAGCCTCCTTTCTCGTTGTGGGAGGGAAGGAAAGTGAGGAA
ACCCGCAAGACAGCCAGCCTACAAAGAGTAAAAGTAATGACAACACGAAA
ATTGGCCACACCCAAGGATCAAAGTGGAGATTGTGAGTTTTCAACGTTAT
GTCTAATTCTCTATGTGTTTAAAAGGCCTTAGCTCGTCAGATATCTGCAC
AGGATTCTGCCCGTGCACTGAGTCGGTACATTTTTGGAACGTTTTGTTGG
GTCTCTATCTGGGGATGTAAGCCCTCGGTGTCACAAACGTTGCACAGTCG
GACAGTACACTTGAAAAGTGCCGCTTTCGATTGAGCACGGAAAACAGCGC
TGCATGGTAGTACCACAGTGGACGACTGCGAAGAGGATAGCGAATCACTC
TCACCACCTCCACAAATTGGAGCAAAGTCAAGTATTGGAAGGGTGGCGAG
AAAGCTGCGTGTTCGTCCGGGCTGTAAATCTTCCTCTGAAGTTAAAATCC
AACGAAGATTAGGACGCTTCCACTTAACTCCATTTGATGGAGTGGCGCCA
AAAATGTTTTCGACCAGTTCTAGACCGAGCAAGTGAAACTATCTCCACAA
ATATGTTTGATAAAGGTACATACTGGCTACGGTTGCTCATGCCGTGCAGC
GATACT

Coding sequence (CDS) from alignment at CM002459.1:530357..533712-

>rna2502 ID=rna2502|Name=rna2502|organism=Nannochloropsis gaditana|type=CDS|length=918bp|location=Sequence derived from alignment at CM002459.1:530357..533712- (Nannochloropsis gaditana)
ATGCTCGATGCGTATCATCAGTCTACTCAAACGCTGAATATCCTCAGAGC
CTTCGCGACAGGTGGCTATGCCGACATCTCGCGCCTGCACGCCTGGAACC
TGGACTTTGTGGAAAAATCCGAGGAGGGCAGTCGGTATCGGAAACTGGCG
TCAAAAGTCGACGAGTCCTTACGATTTATGAAAGCTATCGGCGTAAATAC
GGAGTCTGCTACATTCAAACAGGCACAGTTTTACACTGCGCACGAATGCC
TCCTGCTTTCTTATGAGCAGGCGCTGACCCGTCAAGACTCCACGACTGGG
AAGTGGTACGACTGCTCGGCGCATATGCTTTGGATAGGAGAACGAACTCG
ACAGCTTGATGGGGCGCACTTGGAATTTACTCGCGGCATTGGGAATCCTC
TCGGTGTTAAGATTTCGGATAAGATTACCCCCGAAGAGCTTCTGGAGGTG
ATTGACAACTTAAACCCCAACAACATACCTGGCCGCCTCTCCCTCATTGT
GCGCATGGGCGCAGACAAGCTACGAGAAAAGCTTCCGGCACTTATACGAG
CTGTTCAAAAGGAGGGTCGCTTTGTGGTTTGGGTGTCAGACCCCGTGCAC
GGTAATACGATTAAGGCGGACAATGGTTTGAAGACACGACCCTTCGAGAA
GATTCGGGATGAATTACGAGCTTTCTTCGATGTTCACGACCAGATGGGCA
CGCATCCCGGCGGTGTGCATTTAGAGATGACAGGTAAAGACGTGACTGAG
TGCATCGGCGGTACCATCCAGGACATTAAAGTGGACGACCTAAACAAGCG
CTACCACACGCATTGCGACCCTCGTCTCAACGGCGTACAAGCTTTAGAGC
TGGCTTTTCTAATCGCTGAACGGATGCGTTCACGCACTGGACTTCCACCC
CTCTTCAACGACGCCTAA

Synonyms

Publications