rna2501, rna2501 (mRNA) Nannochloropsis gaditana

Overview
Namerna2501
Unique Namerna2501
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1624
Alignment locationCM002459.1:529377..530917 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g145.9108.mrna
Orig protein idgnl|cribi|Naga_100004g145.9108
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:529377..530917 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g145gene2391Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2501rna2501-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28177.1cds2493Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2501 ID=rna2501|Name=rna2501|organism=Nannochloropsis gaditana|type=mRNA|length=1624bp
AAGTGCTGACGTGCTGACGGAAAAGCCTGCAGAACATAAAAAGGTCCGGG
ACGACCACGCTGGGAGCGTGCGCACGTCGGACGTGCTAGAAGGCGAGGCA
GCTCGAAGGCCCGAGCCCCGCCATGCCCACCCCCTGCGAACTCCTTCCTG
CCCGAAGCTTTCCTCACCATTTACGCCCCGCTTTTAGCATTTTATTTTAA
ATTCGATTTGACAAAAACACAGTGCTGCAACATGGCTGACAAGAGAAATG
GGTCTACGAAGCGGGCATCGAGGAGAGGTGACGAGAAATCAGGAAGTATT
GGAGAAAGGAAGCGCCCGCGTTACCAATCATCACCGTGGTCCTCGTCGTT
GTCAGCGGTGCGAAATGGGCAAGCCATCCTTTTTACTTGCGACGTCGGTC
GGGAAGCTAAAGCGGCCAAAGAGCTGTCCATTGTACTGGAAAGGGCAAGT
ATCCCCTCTATGCGAGAATAGGAACTAAGGTTTATGAAAATTTGCCTTCC
CGCTCCCGTCTGAGCGTTGCCCGTATACACGGCAGTGAACGAGAAATGAG
CTCTACTCTCACTACAATTTATTTTGTTGCTTCGTTAAACAAATTCGCAA
TGACAGCAACAAGTTATTTGCCTGATGGTCTCTATTCTGAAAGATGCTCT
TTCAGGACGGAGTGCTTTCTCATGACACGCGTCTTGTCCTCTTTTATAAT
TTCACACGTAGTATGCAGAGGATGCCCGGAGTCCCAGTGGGGGCCCTCTC
GGTGGGGCGTCCGACAAAGACCAAACCTTCCCAGTGGGCACGGAAAATGT
GACACTAGCTTCAGGAGATGAAGGAGCAGGGGAAGGCACCATTCGGGACA
CGCTTGAACAGGAAATAGCAGACTTGAAGGAAAAAACAAAGTCGGGGGCA
AGGTCGACTATGGTGCCCATAGAGACAGGATGTAGAGGCACCTGTGGAGT
CAGCATTCCTAAAGATGGCCCTTTATCACCCGTTAAAGCCTGCATTCGGA
TGCTGGAGGAAGCGAAGACTGGGCAAAGCAGTACTCGCGGCATTATCAAA
CTGATGCCACTGGAAAGAATTTGTTTTGGCGGAAATTTGGAGGCACTCAA
ACGAGAAGCTCGTGATTTGCTATTGGAAAAAGGTCTGATTGTAGAGAAGG
AGGAACACGCGGAAAAAGCATCTGGACAGATAGGATTGGAAAGTGAAAGG
AAAGCTGTGGATTCAAGCAGCAGGCCAACTTACATGGTGAGTTTATGTCG
ACGCAACTATGCGGCGCACTCACGCGACGAGATTTTCAAGACTCTTGGAG
ATGTGATTGGTGGTCGTTGGAAGGTGGATCTAACCTGTCCCGACTATGTC
CTCCTCGTTGAAGCCATCAAGGGAACTATCGGCGTCGGCATTTGCCCTCG
TTTCATTGAATTAAAGAAATACAATTTACGACAGCTTCAAGATGAGGCTC
GAAAAGAGGATCAGGCACTACAAGGGAAAATTAGGGCCGAAAAACGGGAA
TAAGATTTTTTCTGAAGAACACCTCGAAATTTCCTCATTAGGCAAAAGAC
AATGCATATGCATGATTGTCTCTACCACCTTTTAATTTTTTGAGTGTAAT
ACATCACCAGAGGCCTGGTATTTC
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protein sequence of rna2501

>rna2501-protein ID=rna2501-protein|Name=rna2501|organism=Nannochloropsis gaditana|type=polypeptide|length=134bp
MEVELVDLISQIASIVCNPKFVRPIPDQTLEAIERVPSVSPSSPRFVCSI
PLSDSIPPSLRIPQYIAKPSVRPLPIRLQSSKTIINGQVAKVSLHGMSNR
SQYVPLSNIFVEIVSLARSRTGRKHFWRHSIKWS
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mRNA from alignment at CM002459.1:529377..530917+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2501 ID=rna2501|Name=rna2501|organism=Nannochloropsis gaditana|type=mRNA|length=1541bp|location=Sequence derived from alignment at CM002459.1:529377..530917+ (Nannochloropsis gaditana)
GGACCTTTTTATGTTCTGCAGGCTTTTCCGTCAGCACGTCAGCACTTTCG
TGACAGAACATGACAACCAGGCTGGGCGCAACAATGTTTGGTGCTGGAAC
GAGACGCTTGGCGCGGGAAAAATTGTATGACGTGAAGGCGAAATGGTTGA
AGCTCCAGACGAATTTCTCGAATTAAACAAGCTATCACAGACTCAATGCT
CTTATTTTCCCGGGGACTAGGTATGAGAGCAGTATGGACgggcctcttcc
accccAGACCATAGGTGCTCGTCTAAACGCATCCCACATCATTCGTGCTG
ATGGGCGGTCACGCGCTGTGCGAGTAGCAAATACGCACACCTGGAAGCAC
GGCTTCGATTCTTTTTTCGATTACATGGACAGAAGTTTCCCAAGGCGTCA
TGGAAGTGACATTGCTGAAATGGCTACTTGTAAAGAATCGTGGGATTTAA
ATGAATTTTAACGCAATCCCCGTAACGAGGTCGAAGAAGGTTTGGAACCG
CTGCCTTGTTACTTGAAGTCCATGACTCGTAAAATCTCTTTGAAAACTTC
CTCACTCCTGGTCGATAACAGTTAAATGTAAGTCTCGCCGATGGTGGAAG
ATCTGACCGTTAAATTTTAACCAAAAGAGATTGCAATTTCACTCAAGGGA
GCCGTCCTGTTGACGTCCCACGTCTGTAGCTCGTCTACGAACCCTAAGCA
GCCATCCGATGGAAGTGGAGCTCGTTGACCTAATTTCCCAGATAGCCTCC
ATTGTATGCAACCCAAAATTTGTGCGACCAATACCTGATCAGACTTTAGA
GGCGATTGAGAGAGTACCATCGGTGTCGCCGTCAAGTCCTCGATTCGTAT
GCAGCATCCCCCTCTCCGACAGCATTCCGCCGTCCCTACGTATCCCACAG
TACATAGCGAAACCCAGTGTTCGTCCCTTACCCATTCGTCTTCAATCGAG
CAAGACAATTATAAATGGCCAAGTAGCAAAAGTATCGCTGCACGGCATGA
GCAACCGTAGCCAGTATGTACCTTTATCAAACATATTTGTGGAGATAGTT
TCACTTGCTCGGTCTAGAACTGGTCGAAAACATTTTTGGCGCCACTCCAT
CAAATGGAGTTAAGTGGAAGCGTCCTAATCTTCGTTGGATTTTAACTTCA
GAGGAAGATTTACAGCCCGGACGAACACGCAGCTTTCTCGCCACCCTTCC
AATACTTGACTTTGCTCCAATttgtggaggtggtgagagTGATTCGCTAT
CCTCTTCGCAGTCGTCCACTGTGGTACTACCATGCAGCGCTGTTTTCCGT
GCTCAATCGAAAGCGGCACTTTTCAAGTGTACTGTCCGACTGTGCAACGT
TTGTGACACCGAGGGCTTACATCCCCAGATAGAGACCCAACAAAACGTTC
CAAAAATGTACCGACTCAGTGCACGGGCAGAATCCTGTGCAGATATCTGA
CGAGCTAAGGCCTTTTAAACACATAGAGAATTAGACATAACGTTGAAAAC
TCACAATCTCCACTTTGATCCTTGGGTGTGGCCAATTTTCG
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Coding sequence (CDS) from alignment at CM002459.1:529377..530917+

>rna2501 ID=rna2501|Name=rna2501|organism=Nannochloropsis gaditana|type=CDS|length=405bp|location=Sequence derived from alignment at CM002459.1:529377..530917+ (Nannochloropsis gaditana)
ATGGAAGTGGAGCTCGTTGACCTAATTTCCCAGATAGCCTCCATTGTATG
CAACCCAAAATTTGTGCGACCAATACCTGATCAGACTTTAGAGGCGATTG
AGAGAGTACCATCGGTGTCGCCGTCAAGTCCTCGATTCGTATGCAGCATC
CCCCTCTCCGACAGCATTCCGCCGTCCCTACGTATCCCACAGTACATAGC
GAAACCCAGTGTTCGTCCCTTACCCATTCGTCTTCAATCGAGCAAGACAA
TTATAAATGGCCAAGTAGCAAAAGTATCGCTGCACGGCATGAGCAACCGT
AGCCAGTATGTACCTTTATCAAACATATTTGTGGAGATAGTTTCACTTGC
TCGGTCTAGAACTGGTCGAAAACATTTTTGGCGCCACTCCATCAAATGGA
GTTAA
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Synonyms
Publications