rna2486, rna2486 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2486
Unique Name	rna2486
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2225
Alignment location	CM002459.1:500173..503436 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g127.9227.mrna
Orig protein id	gnl\|cribi\|Naga_100004g127.9227
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:500173..503436 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g127	gene2378	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2486	rna2486-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28296.1	cds2478	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:500173..503436+
coding sequence from alignment at CM002459.1:500173..503436+

mRNA sequence

>rna2486 ID=rna2486|Name=rna2486|organism=Nannochloropsis gaditana|type=mRNA|length=2225bp
CCTGACCCCCCCTGGGTACCCTTTGTCTTTACCCCCCGAAACAAAGAATG
TTGAGGCTATTATACAATGTCAACGCTTCCACTTGTTTTTTTTTGTCTAC
ATCTGTACATTATCCTCCAGTGAAAACCATGCTGCTGTTAAAAAATGCCT
GCTTTTGGCAATGGGATCCCGACACGCTCCCCTTCTCGGGCCGCTTAGCG
GAAGGCTGGTGCCTGATCGACGATGTGCGGGGAGTCTTCGACACAGTGTT
CTGCGAAGACAACTTATGTATAGATGATCAAAGATCGGCCTACGAGCAGG
CCCAAGCGCAGGCAACGAGAGTTATCGATATGAAATGCAACGAGGGCAAC
ATCTTGCTTCCTGGCTTGATTGACTCGCATATACATGTGGGATACATGGG
GGAGGCCTGCGAGTACTTGCAATTGCGTGGAACTCGTAGTCTTGATGATC
TAAGTACTGCAGTCCGAAACTATGGTAAGGAAAACCCGAAGAAAAGCTGG
ATCATCGGTGTCGGATGGGATCAGTCAGGTTGGGGAGGTTGTTACCCTAC
CAGGCAAGTCCTCGATGAGGCGATGCGAGAGGACAAGCGACCGCTCGTAT
TATACCGAGAATGCTGGCATATCGTTGTTGCTAACACAGCCGCCTTACAA
CGGGCTGGAATCCGGCTCACACCGACGAATGAGCAGCACTTCTCTGGCGT
TGACCTTGATGCCTCAGGAGTTCCGACAGGCATCTTTAGAGAAACAGCTG
TCCTTCTCATCACAAACCATATTGCGGAAAACAATGAAAAGTTGCGCGAA
GTTTATATTCGAAATGCGCTGAACAATTGTCTCAGGGCAGGGCTAACCGC
GGTTCAGACGAATGACATCAAAGCTTGGAATATCTACCAAAATCTGGAGG
CCAAGGGAGAGCTTCCATTGCGAGTTTTTTTAACGATCAACTATGAAGAG
TTTGAAGAAGAAGGAAAGCAACCCAATTTCCACACCCTCAATAGCAAGCC
GCCTCTATTCACCTGTCGGCGTATCAAGCTTTATTCGGACGGTTCTTTGG
GCGCTGAAACGGCCGCATTGCGTTCTCCTTATCCAGGTAGCACAAACAGG
GGGCTTCTCATCCACAATGTGGAGGATCTTGCAGCAAAGATCTGCCATTC
CCACGAGGCAGGGTTTCAGCTAGAGGTGCACGCAATAGGGGATCGGGCTT
TGTCCACTGTCCTCGAGGCGTTAAAACGGGCCCGGATTAAGCCTGGTGCC
CGGCCTGTGATAACGCATTGCCAGGTTCTGGGAGAAGATCTTATAAATCG
CATGGCCAAACAGGGTGTGGTTGCCAGTATACAGCCCTCCTTCGTGGGGA
CAGACTGTCAATGGATTCAGGAGCGTTTGCCATCCCATGTCCTAAAGACA
TCTTATTGCTGGAAGAGTTTGTTGGAAAATGGAGTGTATTGTGCTGGAGG
CTCAGACTCACCTGTGGAAGGGTGCGAGCCGCTAAGCGGCATATACGATG
CCATGCACAGGTTGTCTCATGCTAGCAAATTGACGGCTCGGAAAAAAAAA
GACACCACCTCGACCACCAGCGGTGTCGACGAAAGTTCCTTTTTACCCCG
TGAATGTTTGACTTTCACCGAGGCTCTCCACTTGTATACCATTGGCGGGG
CCTACGCCTGTCATATGGAGAAACACCTCGGCCGGATAGCGCCGGGGTAT
CAGGCAGACTTGGTGGTGGTAGATAGGGATGTGACGGGGCCTCGCGGAGA
GGACACATGTCATGCGCTCCTTGAGGCAGCGATCAAAGAGGTATGGGTAG
GAGGGATATGCCGCTTTGACAAAATGGAGGAAGAGGGCCCTCGAAGGAAG
GGAACAGAGCGGGATTTAAAATTACGAGAAAACTTGAAAGGGCCTTACAT
TCCCGGGAAAAACGGTCCAACGGGACATCAAAAGCCGGTTGGGTCACTGA
TCCTGGGCGGCAAAAGACTGGGTATAGGTTGTTGTGGGCGGTGAGATAGC
GATATGTCGAGATCGCATGCAAGAGCCCATAGCAGTGTCTTGTTTTAATG
TGCTTGTATACTGAAAGTACTCTTCATCAAAGTTCAATGTCTGTTACCCA
AAATTTGACCTTGCTCGCTCTGACTTCTCTCCCTTTTACATTATAATGCA
TTTGATTGCCGTTGTGTGAAAATCCATTTGAGGAGGACAGTCACTGATAG
AGCCAGTTTTGATGCGCCGTTTTCG

protein sequence of rna2486

>rna2486-protein ID=rna2486-protein|Name=rna2486|organism=Nannochloropsis gaditana|type=polypeptide|length=911bp
MARARSLYDMGVWSITTRDEYVSFLQSKKNLSKASIHSYCWRLETLFRAL
MTGKQKQGNLDRGQIRQLIEHNLEEAERLVAQDDRRSHWCLLKEFLELPS
APLCAGERGRDEQLLDSVRGVGEDEVRFPVHTLENEANKHKSISPNSFRK
RNGMMAASKGKHENKVWDMELKKDYRTWLRERGVKERTCGSYCTFVHNLL
RALADARKPVPYRSHRQQTTTIPITLLPTFPQSRLSHEEGKEERKREQQE
EPSVLAMQDQEHHQQQISYQQPRAGQRECLHEGLQSGNAILLLASHEDSA
IGDAYCYRGDRSGQEASEDNLRVAEDNEVVAMEGGEAGIVAPRREGLNRG
ELIELLDEQQEEAQRIVRQSKKNRYLRSFREFLGMSNHDDHIVKNSRQWT
DRVGGAYKKWIGAGGANCPHARTRGYVGAARSILRVIKRKGWVQEAFGGP
PLTSADICLAIEAHKEELQQICDKADDECLQAFCRYLRRPENKGDGEEEE
EKDFHSSPAVSSLGIGAEDDEAAEDMGDHKIGTNPPTAVKGLHELTSTKA
CIHRPLKSDAGIGHMNRVVQSSEHPARCGAEEETVDNQQHEWPIFNSVGH
KRKRPDTTREQGMEHRIRSLTLDLECKTRERNAALARIHALELEIQHLRD
RFLSTSTPPVSAVQEGPTECQQQHTRGVEMILNHPGVTEQENIGAPGAAI
THSVPGHTCGEREGGICADDRVVETNAKDEAVSFRNKMGREGERAEGDPG
FLLLEADAHSNWQRRDQYDQLQRRQSVALPRAGVDLTDGKPQEEDKRQRC
VFRHHVQHIEVHDQRNACDHQDMHLDDGEDQDHHLRIVGERETENLQHLH
DASFACSLGLREMGEGKGDGVESRDCVGHNSRMHTIATLGLASDITERAG
VEENHTIRQGW

mRNA from alignment at CM002459.1:500173..503436+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2486 ID=rna2486|Name=rna2486|organism=Nannochloropsis gaditana|type=mRNA|length=3264bp|location=Sequence derived from alignment at CM002459.1:500173..503436+ (Nannochloropsis gaditana)
GGCCTGCTTATTAAATGGCAGTGAGACTCGTACTGATGGGATAGTGTGTG
GGCCTAATAAAATTATTCAAGTCGTATTTCAATATTTGAATATATCATCT
CATAGTTGGCAGACCTTGCATGGTTGTGGAGCGGTtttggcagcggcagc
aggtTTTTTCGACTCCTTCAACAGCCGTGTCGGCCTACGACTATCACGAT
AAGGGTAGGTATCTGGGAGGATAAAACGTGTGTATGGTGGCTTCTTGCAT
CTTACAGATGTTTTATTCTACTAGAGAATAGGTGTATATTACCGTATTGA
GGTTTTTCCCCTTTTGCTGGCTCGTTCTTATCGCCTGGTGGAACAACAGG
GGATGGCACGAGCGCGGAGTCTGTATGACATGGGCGTCTGGTCAATAACC
ACACGCGATGAATACGTCAGCTTTCTTCAGTCAAAGAAAAATCTCTCAAA
GGCCTCCATTCATAGCTATTGTTGGCGGCTTGAAACGCTGTTTCGTGCCC
TGATGACGGGCaagcaaaagcaagggaACTTAGATCGAGGCCAAATAAGA
CAATTAATCGAACATAAtttggaggaagcagagcgCCTTGTGGCTCAAGA
CGACCGCCGTAGCCATTGGTGCTTGCTTAAGGAATTTTTAGAGCTGCCAT
CTGCTCCTTTATGCgcgggcgagagaggaagagatgagCAGCTGTTGGAC
AGTGTacggggagtgggagaggacgaggtacGCTTTCCTGTCCATACTCT
TGAGAACGAGGCAAATAAGCACAAATCCATTTCACCGAATTCTTTTCGAA
AGAGAAATGGAATGATGGCAGCATCAAAAGGGAAGCACGAAAATAAGGTT
TGGGACATGGAGCTCAAGAAGGACTACAGGACTTGGCTGAGAGAGCGCGG
CGTGAAAGAGAGGACTTGCGGGTCATACTGCACATTCGTGCATAACCTTC
TGCGAGCATTAGCAGATGCACGGAAGCCAGTGCCATATAGGAGCCACCGG
CAGCAAACCACCACGATACCTATCACATTACTGCCTACATTCCCACAATC
ACGCTTGTCacacgaagaaggaaaagaagaaagaaaacgaGAACAACAGG
AAGAGCCCTCTGTATTAGCCATGCAAGACCAGGAGCACCATCAACAGCAA
ATATCCTATCAGCAGCCTCGTGCTGGGCAGCGTGAATGTCTACATGAGGG
GCTACAAAGCGGTAACGCCATTTTATTGCTTGCTTCTCATGAAGACTCGG
CAATTGGGGATGCATATTGTTATCGCGGCGACAGAAGTGGACAGGAGGCT
TCCGAAGACAATTTAAGAGTGGCAGAAGACAACGAAGTAGTCGCAATGGA
GGGCGGTGAAGCGGGGATTGTTGCGccccggcgggagggatTAAACAGAG
GGGAGCTGATCGAGCTACTGGATGAGCAACAAGAAGAGGCGCAACGCATT
GTTCGTCAGTCTAAGAAAAACCGCTATCTACGGTCATTTCGAGAATTTTT
GGGCATGAGTAACCATGACGATCACATCGTCAAAAATTCTAGGCAGTGGA
CAGATCGAGTAGGAGGAGCTTATAAAAAGTGGATCGGAGCTGGGGGTGCG
AATTGTCCACATGCCCGCACTCGAGGTTACGTTGGTGCAGCTCGAAGTAT
TCTGCGGGTCATAAAACGGAAAGGATGGGTCCAAGAGGCGTTCGGAGGGC
CTCCGCTCACCAGCGCTGATATTTGCTTGGCCATTGAAGCCCATAAAGAG
GAACTGCAACAGATTTGTGACAAGGCAGATGATGAATGCCTACAAGCATT
TTGCCGTTATTTGCGGCGACCGGAAAATAAGGGAgatggcgaagaagagg
aagagaaggacttCCATTCTTCTCCGGCAGTCTCATCGCTTGGGATAGGA
gccgaggacgatgaggctGCTGAAGATATGGGAGATCATAAAATTGGTAC
TAATCCCCCTACTGCAGTCAAGGGACTCCATGAACTGACATCGACGAAGG
CATGTATTCATCGTCCTCTGAAGTCAGACGCGGGCATCGGGCACATGAAT
CGTGTTGTTCAATCTTCAGAACACCCCGCAAGATGCGGGGCTGAAGAGGA
GACTGTCGATAATCAGCAGCACGAATGGCCGATTTTTAATTCAGTGGGTC
ACAAAAGAAAGCGACCGGATACAACCAGGGAGCAAGGGATGGAACACCGT
ATCAGATCACTAACACTCGACCTAGAATGTAAGACACGAGAACGCAACGC
GGCACTCGCGCGCATACATGCGCTAGAGCTAGAGATACAGCATTTGCGAG
ATCGCTTTTTGAGTACATCAACTCCGCCTGTCTCGGCTGTACAAGAAGGA
CCTACCGAATGTCAGCAACAACATACACGTGGTGTGGAGATGATTTTAAA
CCATCCCGGGGTCACAGAACAGGAAAATATAGGCGCACCGGGAGCTGCAA
TCACACACAGTGTACCAGGCCATACTTGTGGAGAACGTGAGGGAGGCATT
TGTGCAGATGATAGAGTGGTAGAAACGAACGCAAAGGATGAAGCTGTGTC
CTTCAGGAACAAGATGGGACGAGAAGGTGAGAGAGCAGAGGGTGATCCCG
GCTTTTTGTTGCTTGAAGCTGATGCACATTCTAATTGGCAACGTCGAGAC
CAGTATGATCAGCTTCAGCGCCGACAGTCAGTTGCGCTACCACGCGCTGG
GGTTGACTTGACCGATGGAAAACcccaggaagaggacaagaggcAGCGCT
GCGTCTTCCGACACCACGTTCAGCACATCGAAGTACATGATCAACGGAAC
GCTTGCGACCATCAGGACATGCACCTAGATGATGGAGAGGATCAGGACCA
TCATTTACGCATCGTGGGAGAACGAGAAACGGAAAATCTTCAGCATCTTC
ATGACGCTTCATTTGCATGCTCCCTCGGCCTTCGTGAgatgggagaaggg
aaaggagatggggTGGAGAGCCGGGACTGTGTGGGTCATAATTCTCGCAT
GCACACCATTGCCACGCTGGGTCTTGCATCCGACATTACGGAAAGGGCAG
GTGTGGAAGAAAATCACACCATTCGTCAGGGATGGTAGAATGCCCATGAA
ATCTAGAGCAGTCGTACACAGATATGACACGCGATAAGTTTGAAGGATCA
TCGCGAATCAAAGTAGGCCCACGCACATTGTTCTGTCGAAAATTAGAGAA
TATTTTTCTGACGTTGTGCGCTAAGTACGATAAAGAATCAAGAGTCAAAG
CATAAGTGTTATAA

Coding sequence (CDS) from alignment at CM002459.1:500173..503436+

>rna2486 ID=rna2486|Name=rna2486|organism=Nannochloropsis gaditana|type=CDS|length=2736bp|location=Sequence derived from alignment at CM002459.1:500173..503436+ (Nannochloropsis gaditana)
ATGGCACGAGCGCGGAGTCTGTATGACATGGGCGTCTGGTCAATAACCAC
ACGCGATGAATACGTCAGCTTTCTTCAGTCAAAGAAAAATCTCTCAAAGG
CCTCCATTCATAGCTATTGTTGGCGGCTTGAAACGCTGTTTCGTGCCCTG
ATGACGGGCaagcaaaagcaagggaACTTAGATCGAGGCCAAATAAGACA
ATTAATCGAACATAAtttggaggaagcagagcgCCTTGTGGCTCAAGACG
ACCGCCGTAGCCATTGGTGCTTGCTTAAGGAATTTTTAGAGCTGCCATCT
GCTCCTTTATGCgcgggcgagagaggaagagatgagCAGCTGTTGGACAG
TGTacggggagtgggagaggacgaggtacGCTTTCCTGTCCATACTCTTG
AGAACGAGGCAAATAAGCACAAATCCATTTCACCGAATTCTTTTCGAAAG
AGAAATGGAATGATGGCAGCATCAAAAGGGAAGCACGAAAATAAGGTTTG
GGACATGGAGCTCAAGAAGGACTACAGGACTTGGCTGAGAGAGCGCGGCG
TGAAAGAGAGGACTTGCGGGTCATACTGCACATTCGTGCATAACCTTCTG
CGAGCATTAGCAGATGCACGGAAGCCAGTGCCATATAGGAGCCACCGGCA
GCAAACCACCACGATACCTATCACATTACTGCCTACATTCCCACAATCAC
GCTTGTCacacgaagaaggaaaagaagaaagaaaacgaGAACAACAGGAA
GAGCCCTCTGTATTAGCCATGCAAGACCAGGAGCACCATCAACAGCAAAT
ATCCTATCAGCAGCCTCGTGCTGGGCAGCGTGAATGTCTACATGAGGGGC
TACAAAGCGGTAACGCCATTTTATTGCTTGCTTCTCATGAAGACTCGGCA
ATTGGGGATGCATATTGTTATCGCGGCGACAGAAGTGGACAGGAGGCTTC
CGAAGACAATTTAAGAGTGGCAGAAGACAACGAAGTAGTCGCAATGGAGG
GCGGTGAAGCGGGGATTGTTGCGccccggcgggagggatTAAACAGAGGG
GAGCTGATCGAGCTACTGGATGAGCAACAAGAAGAGGCGCAACGCATTGT
TCGTCAGTCTAAGAAAAACCGCTATCTACGGTCATTTCGAGAATTTTTGG
GCATGAGTAACCATGACGATCACATCGTCAAAAATTCTAGGCAGTGGACA
GATCGAGTAGGAGGAGCTTATAAAAAGTGGATCGGAGCTGGGGGTGCGAA
TTGTCCACATGCCCGCACTCGAGGTTACGTTGGTGCAGCTCGAAGTATTC
TGCGGGTCATAAAACGGAAAGGATGGGTCCAAGAGGCGTTCGGAGGGCCT
CCGCTCACCAGCGCTGATATTTGCTTGGCCATTGAAGCCCATAAAGAGGA
ACTGCAACAGATTTGTGACAAGGCAGATGATGAATGCCTACAAGCATTTT
GCCGTTATTTGCGGCGACCGGAAAATAAGGGAgatggcgaagaagaggaa
gagaaggacttCCATTCTTCTCCGGCAGTCTCATCGCTTGGGATAGGAgc
cgaggacgatgaggctGCTGAAGATATGGGAGATCATAAAATTGGTACTA
ATCCCCCTACTGCAGTCAAGGGACTCCATGAACTGACATCGACGAAGGCA
TGTATTCATCGTCCTCTGAAGTCAGACGCGGGCATCGGGCACATGAATCG
TGTTGTTCAATCTTCAGAACACCCCGCAAGATGCGGGGCTGAAGAGGAGA
CTGTCGATAATCAGCAGCACGAATGGCCGATTTTTAATTCAGTGGGTCAC
AAAAGAAAGCGACCGGATACAACCAGGGAGCAAGGGATGGAACACCGTAT
CAGATCACTAACACTCGACCTAGAATGTAAGACACGAGAACGCAACGCGG
CACTCGCGCGCATACATGCGCTAGAGCTAGAGATACAGCATTTGCGAGAT
CGCTTTTTGAGTACATCAACTCCGCCTGTCTCGGCTGTACAAGAAGGACC
TACCGAATGTCAGCAACAACATACACGTGGTGTGGAGATGATTTTAAACC
ATCCCGGGGTCACAGAACAGGAAAATATAGGCGCACCGGGAGCTGCAATC
ACACACAGTGTACCAGGCCATACTTGTGGAGAACGTGAGGGAGGCATTTG
TGCAGATGATAGAGTGGTAGAAACGAACGCAAAGGATGAAGCTGTGTCCT
TCAGGAACAAGATGGGACGAGAAGGTGAGAGAGCAGAGGGTGATCCCGGC
TTTTTGTTGCTTGAAGCTGATGCACATTCTAATTGGCAACGTCGAGACCA
GTATGATCAGCTTCAGCGCCGACAGTCAGTTGCGCTACCACGCGCTGGGG
TTGACTTGACCGATGGAAAACcccaggaagaggacaagaggcAGCGCTGC
GTCTTCCGACACCACGTTCAGCACATCGAAGTACATGATCAACGGAACGC
TTGCGACCATCAGGACATGCACCTAGATGATGGAGAGGATCAGGACCATC
ATTTACGCATCGTGGGAGAACGAGAAACGGAAAATCTTCAGCATCTTCAT
GACGCTTCATTTGCATGCTCCCTCGGCCTTCGTGAgatgggagaagggaa
aggagatggggTGGAGAGCCGGGACTGTGTGGGTCATAATTCTCGCATGC
ACACCATTGCCACGCTGGGTCTTGCATCCGACATTACGGAAAGGGCAGGT
GTGGAAGAAAATCACACCATTCGTCAGGGATGGTAG

Synonyms

Publications