rna2483, rna2483 (mRNA) Nannochloropsis gaditana

Overview
Namerna2483
Unique Namerna2483
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length288
Alignment locationCM002459.1:496535..499285 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g125.9196.mrna
Orig protein idgnl|cribi|Naga_100004g125.9196
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:496535..499285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g125gene2376Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2483rna2483-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28265.1cds2475Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2483 ID=rna2483|Name=rna2483|organism=Nannochloropsis gaditana|type=mRNA|length=288bp
ATGTCGGGTGTCGGAGAACGCATTAACGAGGCGATGGAAGGCGCTAAGGA
AAAGATAAGCGACGCGGGGCAATCCATCCGTGAGGGTGTCTCCCGTGCTT
CCGAGCGCACTGCAGCAGGGACCCAGCAGGCCACTCACCGGATGCAGGAG
GCAGGGCAAAATGCTGTGCACTCGGGGAAAGAAAGTGGGCTCGAAACGGG
ACACTCGGCTGAAGAGGCCTACGAGCAGGCCAAACATAAGGCTCAAGAAA
GCGCCCCATCCACCCGTAGTGGTAGCAGCCACAAATGA
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protein sequence of rna2483

>rna2483-protein ID=rna2483-protein|Name=rna2483|organism=Nannochloropsis gaditana|type=polypeptide|length=206bp
MAELKNMLLSDVHQTRLAVLNIATAIFASLVGGEAESDVSPSKEEPHHGD
DRHYFYALQTAKSTPSEGSSITLPQEKASFGDQSAVYVAESTEKGVGAVL
PPRTQTMSSDLPMLIVSDMLGQRPQSNEAGKRDFSMGRTSKEVLARRLVN
RKEDESPFKKISTQENYTLEGSSRMGSRKRRIKTGSISDCPPQMDFHTTA
IKCIIM
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mRNA from alignment at CM002459.1:496535..499285+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2483 ID=rna2483|Name=rna2483|organism=Nannochloropsis gaditana|type=mRNA|length=2751bp|location=Sequence derived from alignment at CM002459.1:496535..499285+ (Nannochloropsis gaditana)
AATGCTTCATGGGTGAAACGGCGAAAGACATGACCAAAAAAAATTCCTCA
GAGATATTTCTACCTCTCCACTTTTTTTTGCCCTGAAGGAATTTGATTAG
CGCagacaaagaagaagggcacTGCAAAGTCAGGGGGGAAATTACAGAAC
GTAAGTATAATCATACCCGTCCCTACGAATTTATCACTCGTTATGATCGA
CATTTCAGGCGTTACCCTTATCTTGTTCGGGGAGCAAGTTTCGTTGGCTC
TTTTTGATTGCTTTTCTTAGGTTGCAGTTGCACTTGCCTTGACGGGCCCT
TTTCTCGGTTCCTGTTTGTTCATTTACTTCTCTTTTTTACGATTAAAGTC
AAAAAAGCTGGTAATTCTTTTCGTTCTACCTGTTCGAGAAGACGCTTTAA
GTGGTTCTAATATCCCGTCATATTGTGCGGGAGGTTATTCTCATCGTGCT
CTATGCCTGAACATGTCACAGTAATTCGATCAAGCACGACGCGTCATGGC
AGAGCTTAAAAATATGCTTCTATCAGATGTGCATCAAACTCGTTTGGCCG
TCTTGAACATTGCCACAGCCATATTTGCGAGTTTGgtcggaggagaagct
gagTCCGACGTTTCGCCCTCCAAAGAAGAGCCCCATCATGGTGATGATCG
GCACTACTTTTATGCTCTTCAAACCGCCAAATCCACCCCGTCAGAAGGCT
CTTCAATAACACTGCCGCAGGAGAAAGCAAGTTTTGGAGATCAATCTGCG
GTATATGTCGCTGAGAGCACTGAAAAAGGGGTTGGAGCGGTTTTGCCGCC
CAGGACTCAAACTATGTCTTCTGACTTGCCAATGCTGATTGTGTCTGACA
TGTTGGGCCAGAGACCCCAAAGTAATGAAGCTGGCAAGAGGGACTTTAGT
ATGGGGAGGACATCCAAAGAGGTGTTGGCGCGACGATTGGTGAACAGAAA
AGAAGACGAGGTAAGTAAAAAAAatgtgaaagaaaagagggtaGGACACA
CTAAACCAGATGACATTATAACAACTCTGAAATATTCGATTACACGTCTA
ATTTGGCAACCACAGAGCCCTTTCAAGAAAATTTCAACTCAGGAAAATTA
CACTTTGGAGGGATCTTCCAGAATGGGATCTCGAAAACGGCGCATCAAAA
CTGGCTCTATCAGTGACTGTCCTCCTCAAATGGATTTTCACACAACGGCA
ATCAAATGCATTATAATgtaaaagggagagaagtcAGAGCGAGCAAGGTC
AAATTTTGGGTAACAGACATTGAACTTTGATGAAGAGTACTTTCAGTATA
CAAGCACATTAAAACAAGACACTGCTATGGGCTCTTGCATGCGATCTCGA
CATATCGCTATCTCACCGCCCACAACAACCTATACCCAGTCTTTTGCCGC
CCAGGATCAGTGACCCAACCGGCTTTTGATGTCCCGTTGGACCGTTTTTC
CCGGGAATGTAAGGCCCTTTCAAGTTTTCTCGTAATTTTAAATCCCGCTc
tgttcccttccttcgagggccctcttcctccattttgtCAAAGCGGCATA
TCCCTCCTACCCATACCTCTTTGATCGCTGCCTCAAGGAGCGCATGACAT
GTGTCCTCTCCGCGAGGCCCCGTCACATCCCTATCTACCACCACCAAGTC
TGCCTGATACCCCGGCGCTATCCGGCCGAGGTGTTTCTCCATATGACAGG
CGTAGGCCCCGCCAATGGTATACAAGTGGAGAGCCTCGGTGAAAGTCAAA
CATTCACGGGGTAAAAAGGAACTTTCGTCGACACCGCTGGTGGTCGAGGT
GgtgtctttttttttccgaGCCGTCAATTTGCTAGCATGAGACAACCTGT
GCATGGCATCGTATATGCCGCTTAGCGGCTCGCACCCTTCCACAGGTGAG
TCTGAGCCTCCAGCACAATACACTCCATTTTCCAACAAACTCTTCCAGCA
ATAAGATGTCTTTAGGACATGGGATGGCAAACGCTCCTGAATCCATTGAC
AGTCTGTCCCCACGAAGGAGGGCTGTATACTGGCAACCACACCCTGTTTG
GCCATGCGATTTATAAGATCTTCTCCCAGAACCTGGCAATGCGTTATCAC
AGGCCGGGCACCAGGCTTAATCCGGGCCCGTTTTAACGCCTCGAGGACAG
TGGACAAAGCCCGATCCCCTATTGCGTGCACCTCTAGCTGAAACCCTGCC
TCGTGGGAATGGCAGATCTTTGCTGCAAGATCCTCCACATTGTGGATGAG
AAGCCCCCTGTTTGTGCTACCTGGATAAGGAGAACGCAATGCGGCCGTTT
CAGCGCCCAAAGAACCGTCCGAATAAAGCTTGATACGCCGACAGGTGAAT
AGAGGCGGCTTGCTATTGAGGGTGTGGAAATTGggttgctttccttcttc
ttcaaacTCTTCATAGTTGATCGTTAAAAAAACTCGCAATGGAAGCTCTC
CCTTGGCCTCCAGATTTTGGTAGATATTCCAAGCTTTGATGTCATTCGTC
TGAACCGCGGTTAGCCCTGCCCTGAGACAATTGTTCAGCGCATTTCGAAT
ATAAACTTCGCGCAACTTTTCATTGTTTTCCGCAATATGGTTTGTGATGA
GAAGGACAGCTGTTTCTCTAAAGATGCCTGTCGGAACTCCTGAGGCATCA
AGGTCAACGCCAGAGAAGTGCTGCTAAGATGTGAACGAAGGGTAGTTTCA
AGTGAAATTAAATGTAATGATTAAAAGTTACTTCATAAGACAAGCCTGAG
A
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Coding sequence (CDS) from alignment at CM002459.1:496535..499285+

>rna2483 ID=rna2483|Name=rna2483|organism=Nannochloropsis gaditana|type=CDS|length=1242bp|location=Sequence derived from alignment at CM002459.1:496535..499285+ (Nannochloropsis gaditana)
ATGGCAGAGCTTAAAAATATGCTTCTATCAGATGTGCATCAAACTCGTTT
GGCCGTCTTGAACATTGCCACAGCCATATTTGCGAGTTTGgtcggaggag
aagctgagTCCGACGTTTCGCCCTCCAAAGAAGAGCCCCATCATGGTGAT
GATCGGCACTACTTTTATGCTCTTCAAACCGCCAAATCCACCCCGTCAGA
AGGCTCTTCAATAACACTGCCGCAGGAGAAAGCAAGTTTTGGAGATCAAT
CTGCGGTATATGTCGCTGAGAGCACTGAAAAAGGGGTTGGAGCGGTTTTG
CCGCCCAGGACTCAAACTATGTCTTCTGACTTGCCAATGCTGATTGTGTC
TGACATGTTGGGCCAGAGACCCCAAAGTAATGAAGCTGGCAAGAGGGACT
TTAGTATGGGGAGGACATCCAAAGAGGTGTTGGCGCGACGATTGGTGAAC
AGAAAAGAAGACGAGAGCCCTTTCAAGAAAATTTCAACTCAGGAAAATTA
CACTTTGGAGGGATCTTCCAGAATGGGATCTCGAAAACGGCGCATCAAAA
CTGGCTCTATCAGTGACTGTCCTCCTCAAATGGATTTTCACACAACGGCA
ATCAAATGCATTATAATgtaaATGGCAGAGCTTAAAAATATGCTTCTATC
AGATGTGCATCAAACTCGTTTGGCCGTCTTGAACATTGCCACAGCCATAT
TTGCGAGTTTGgtcggaggagaagctgagTCCGACGTTTCGCCCTCCAAA
GAAGAGCCCCATCATGGTGATGATCGGCACTACTTTTATGCTCTTCAAAC
CGCCAAATCCACCCCGTCAGAAGGCTCTTCAATAACACTGCCGCAGGAGA
AAGCAAGTTTTGGAGATCAATCTGCGGTATATGTCGCTGAGAGCACTGAA
AAAGGGGTTGGAGCGGTTTTGCCGCCCAGGACTCAAACTATGTCTTCTGA
CTTGCCAATGCTGATTGTGTCTGACATGTTGGGCCAGAGACCCCAAAGTA
ATGAAGCTGGCAAGAGGGACTTTAGTATGGGGAGGACATCCAAAGAGGTG
TTGGCGCGACGATTGGTGAACAGAAAAGAAGACGAGAGCCCTTTCAAGAA
AATTTCAACTCAGGAAAATTACACTTTGGAGGGATCTTCCAGAATGGGAT
CTCGAAAACGGCGCATCAAAACTGGCTCTATCAGTGACTGTCCTCCTCAA
ATGGATTTTCACACAACGGCAATCAAATGCATTATAATgtaa
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Synonyms
Publications