rna2481, rna2481 (mRNA) Nannochloropsis gaditana

Overview
Namerna2481
Unique Namerna2481
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1394
Alignment locationCM002459.1:495493..495771 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g123.9133.mrna
Orig protein idgnl|cribi|Naga_100004g123.9133
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:495493..495771 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g123gene2374Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28202.1cds2473Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2481rna2481-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2481 ID=rna2481|Name=rna2481|organism=Nannochloropsis gaditana|type=mRNA|length=1394bp
CACATCCACTACATCCCTTGCTTACCAGAGCGTGCAAACCGACTCCCACA
TCTGCCCTACAGAGCTTCGCTAACAACTACAAGTGTACGAGTGACGGCGG
TCGGCGAGTACATTCAGCCCACCTTCCTACTTTGTCATTCGCTCATTTCT
ACCAAGAGACTATGGAAGGCATCTCAAATCAGCCTATCGTAATAGATAAC
GGAACAGGTACTTTGAAAGCTGGTTTTGCAGGCGGTGACCGGCCTCGAGT
TGTGTTTTCATCCGCCGTAGGGCGGCCCAAACATGTACGAATTATGCCTG
GCGGCGCCCTAGAGGGCGTGGACCTATGTGTTGGCAAAAAGCTGCAAGAA
CACAGAGGTGCATTTAGATGGAGTTATCCCATGGAGCATGGAGTCGTGGT
GGACTGGCAAGAAATGGAGCAGGTCTGGGGTCATCTCTACTCGCGGGATA
ACTTAAATGTACCATCAGAAGATCATCCGGTTTTATTGACCGAGGCTCCT
TTGAACCCGCTCGTGAATCGCGAAAAGGCATCCGAGGTGCTTTTCGAATC
CTTTAATGTACCTGCCATCTTCCTCGCACCCCAGGCTATCTTAAGTCTTT
ACGCTTCCGGGCGGACGACAGGGGTAGTGCTGGATTCGGGGGATGGCGTC
AGCCACGTGGTTCCCGTATATGAAGGCTTTGCCTTGCCGCATGCCATTTC
TCGCACTGACGTGGCGGGCCGCGACGTTACGGATCACTTACAGTTACTTC
TTCGGCGGTCGGGCTACAAGCTGCATACAAGTGCAGAGAAAGACATAGTG
CGCCAAATTAAAGAGGAAAAATGCTACCTCTCTTTTGACCCGCGAAAAGA
GGAGGAAGCGCCGCCGCAACCCGACACTTTTCGCCTTCCAGATGGTACCC
ACATTTTGATGGGATCAGAGCGTTTTCGCGCTCCGGAAATTTTGTTTCAA
CCGGAGCTAATCGGCAGCGAAGAAAAAGGTGTGCATGAATGTGTCATTCA
AAGCATCATGAAAGCCGACCTGGATTTGCGCAAAGCCTTTTTTGGACAAA
TTGTATTAGCAGGAGGCTCTACAGTTTTCCCTGGTTACGGGGACCGTTTA
CTGAACGAGACTCGAAAACTGGCCCCTCGTGACGTGAAGATCCGTATATC
AGCTCCGCCCGAGCGCAAGTATTCCACGTGGATAGGCGGGTCTATTCTTG
CCTCACTCTCCACATTTAAATCGCTCTGGATTACTCAACGCGATTACCAA
GAGCACGGCAATCAAATTGTTCATACAAGGACTCTGTGAGATCTTGCATG
TTCCCTCAACCGGGCTGTGGTGTGGTGTAAATTGACGCTACTAAATGTAG
GACGGGAAAAAATTAAAGTAAAAATCCCCAAAAGCTGGTTTATG
back to top

protein sequence of rna2481

>rna2481-protein ID=rna2481-protein|Name=rna2481|organism=Nannochloropsis gaditana|type=polypeptide|length=92bp
MFPLGNKTAIDAVISKDDTGPSNNLACPLDNFARDKVKDMKDLYEKQLQY
DFSGYVQHRMAQNMYVSLILPFVYMQEGSVKGTTQRRFNICR
back to top

mRNA from alignment at CM002459.1:495493..495771-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2481 ID=rna2481|Name=rna2481|organism=Nannochloropsis gaditana|type=mRNA|length=279bp|location=Sequence derived from alignment at CM002459.1:495493..495771- (Nannochloropsis gaditana)
ATGTTTCCATTGGGTAACAAGACAGCTATCGACGCAGTGATATCAAAAGA
CGATACAGGACCATCCAATAATTTGGCCTGTCCTCTAGATAATTTTGCCC
GCGATAAGGTCAAAGACATGAAAGACTTGTACGAAAAACAATTGCAGTAT
GATTTCAGTGGCTATGTACAGCACAGGATGGCTCAGAATATGTACGTGTC
TCTAATTTTACCCTTCGTATATATGCAGGAGGGGTCGGTGAAAGGTACCA
CACAGAGACGCTTCAATATCTGTAGGTGA
back to top

Coding sequence (CDS) from alignment at CM002459.1:495493..495771-

>rna2481 ID=rna2481|Name=rna2481|organism=Nannochloropsis gaditana|type=CDS|length=279bp|location=Sequence derived from alignment at CM002459.1:495493..495771- (Nannochloropsis gaditana)
ATGTTTCCATTGGGTAACAAGACAGCTATCGACGCAGTGATATCAAAAGA
CGATACAGGACCATCCAATAATTTGGCCTGTCCTCTAGATAATTTTGCCC
GCGATAAGGTCAAAGACATGAAAGACTTGTACGAAAAACAATTGCAGTAT
GATTTCAGTGGCTATGTACAGCACAGGATGGCTCAGAATATGTACGTGTC
TCTAATTTTACCCTTCGTATATATGCAGGAGGGGTCGGTGAAAGGTACCA
CACAGAGACGCTTCAATATCTGTAGGTGA
back to top
Synonyms
Publications