rna2478, rna2478 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2478
Unique Name	rna2478
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2574
Alignment location	CM002459.1:488903..490635 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g120.9159.mrna
Orig protein id	gnl\|cribi\|Naga_100004g120.9159
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:488903..490635 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g120	gene2371	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2478	rna2478-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28228.1	cds2470	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:488903..490635+
coding sequence from alignment at CM002459.1:488903..490635+

mRNA sequence

>rna2478 ID=rna2478|Name=rna2478|organism=Nannochloropsis gaditana|type=mRNA|length=2574bp
CCGCTGTTGAACGGCCTCAGCTACAATCCTTCACGCACTATGTTTCTCCA
AGCGTACCACGACGTACACGACAGCATCTGTCCTCAGTGGCAACACACTT
CGTCAGGGAATTGTTTTTGCACTCCTTGTCACATTGCTATTCACATCTGC
TTTTCAACCTTCTTGCTTCGCGTGCAACGCGCCCTTCGCGTGTCAACTTC
AGTTGCTAGTCCTCGAGGGGGCTTCTTCTTACGAAGGCCGGTCAGTTCCA
AGCTGTCAAAGCTAGTCGAGATAATTGACCTTCTACACTTGCTTGATAGT
CGAGCAGCATGGCGGCTTGGTTCTCATGTGGATTAACGTGCCATTGGCAT
GACAGCTTGGGCAATGGCCCTGAGTACTGCCTGACAGAGCAGATACAGCT
CAGCTTACGAAGTCTTCCCTGCAACGCTCACGTATTCAATAAGATGAAGT
CTTTCGACAAGGACAATACTAACACAATCTTATTTTCTGGATGTGTGTCT
CTTAGTGCCTTTTTCGCCCCAGAGGCTCTCTGTCATGCCTCCACGAGGAG
CGCCAGGAGTCAGGACACTTTTCCTTTGCAGGGCCAGCAGGGAATATTGG
CGCGCCAGCAATCATTGCAGGAGGTATAGCTCGAGTATATCAAAGGTAAC
ATCGCAGGCGCGGCGATTGCCCGTCGATGATGAACGTACCTTGAAAGATT
TTCTGTCAGGATCACGGGGAAAAGAGGGCGTAGGGCTTGCTACGGCCCAC
TTGCAAATCAGCCAAATGAGTGTAGCCGATGCGTCAACATCTTCCAACAA
TTTTTCGCAGCCATTTGCTGTCAATCCTGAACCCAAAACCTTTACAATTG
AAAGCTACGGCTGCCAACAGAACGTTGCGGATTCTGAAGTGGTGCGAGCC
ATCATGGAGGGAGCTAACTTCAAGTGGGTCGAAGGGGGAAGAATTGATGG
TCATTACAGCGGATGCGACATCATATTTCTCAACACTTGTGCTATACGGG
ATAATGCGGAGAAGCGTATCTGGGGTCGACTCAACCATTTAAAGCATCCA
GTACGCCGGTCACCAGGCACCGGTCCTTTGCCAGGTCGGCGACAGGCACG
ACGAGACGGGCGAAACAAAAAGCCCATCATCGGATTGCTTGGCTGCATGG
CTGAGAGGCTGAAGGCCAGGCTTTTGGAAGAGGAGGCGGTGGACTTGGTG
GTGGGTCCAGACGCTTACAGGGACTTGCCCCGACTCTTGGACATTGTGGA
GGCTGGCGAGAGGGGGGTCAATGTCCAGCTGTCCATGGATGAGACTTACG
CGGAAATCAAGCCTGCGCGAATAAGCCCTGATCAATGCAGCGCCTTCGTC
TCGATCATGCGTGGATGCAACAACATGTGCTCATACTGCATTGTCCCTCA
CACGCGGGGTCGCGAGCGCTCTCGGCCGCTGAGGACAGTGGTGGAAGAAG
TGCGGCGCTTGGCGGACGAGGGGGTGAAAGAGGTGGTACTTCTCGGGCAG
AACGTCAACTCTTTTCACGATACTTCTACCGTCGTACTCAATGGTGGAGG
AAAGTATGAGGCTGCAGAAGGATTTTCAAACCTTTATAAAAGCCGGCACG
AGGCCGGCGCACGGTTCATCGACCTTTTGGATGCCGTCTCGCGGGTGGAT
AAGGACATGCGGGTACGATTTACATCGCCGCATCCCAAAGACTTCCCTCT
GCCCCTGCTGCAGCTCATCTCCGAGCGACCCTCACTGTGCAAGGCCCTGC
ACTTGCCTGCACAGAGTGGGAGCAGCGCTGTATTGCAGCGGATGCGGCGG
GGTTACACGCGGGAAGCATACCTGTCGTTAGTGCAGAGGATCAGAGAAAT
TATTCCTGGGGTAGCTCTGTCGTCCGATTTTATCGCGGGCTTCTGTGGAG
AGACTGAAGAGGAGCATCAACAGACATTGAGCTTGCTCAGATTGGTCGGA
TACGATCATGCATTTCTCTTCTCCTATTCCCTGCGGGAGCGCACTCACGC
AGCTTATCATTTTGAGGATGATGTGCCCGAATCAGAAAAACAACGGCGCC
TTTCCGAGGTTATCTCTACGTTTCGCAGCATCGTAGAAAAACGCAACCGC
GCTGAGATTGGGAGAGAGCACTTGGTGTTGGTCGAGGGTCCCAGCAAGCG
TTCAACGCCTGAAAAGCCTACGTTAACGGGCCGGACTGATACGAACAAGC
GATGCATTCTTCCAGCTCGAGAGGTTCCCGTCAGCGTTGGGGAGGAAGGC
AAGCCCCTGGTGAGCTTGCAACCAGGAGACTACGCCTGGGTACGTGTCAC
CGACGCCAAAGCGCAGACGCTTTTCTGTGACGAGATTTTGGGCCGCAGTA
ACATACAAGAATTTGCGACCGATATTCAAAGGACTGAAAGACTCCCTCGG
ATCCAAAAAGTACAAGTGTGAAGTGCGCGGTGGAAATCCTGATGGAGAAG
AATTTTGTGTGTAGGAACGACGGGGGTCGAATTTCGTGGACGGATAAAAA
AGGCTATGCGGGTAACTCCACACATTTCTTTGAACGTTTTTTCCAAAATT
GAGAACGTAATCTGCTTTGGTTAT

protein sequence of rna2478

>rna2478-protein ID=rna2478-protein|Name=rna2478|organism=Nannochloropsis gaditana|type=polypeptide|length=307bp
MVPVLPLTATGQPTTSLLSSLGRRLSVASRASLLHGRRAGRSTSREGTTP
RQLLQEGSKQGHRIMGVDATKVGRIGDEIDGATRSENSNDKLPPSSSPSQ
AAWREQLRKTLRGKLMLVTNAWTATLILTILLAVVFRALQPTEEPGLGVT
HYAWRGDPSDPNRLSLEELDLDVRGIGRFKMEFGPSKVQLYPMEADEEVR
VGHRDEAALADFLLAEISMPSWNVTLGHDFTIVSAVKASTFFSARRSPLT
SKREQVILSGNFHGYVTLFASLPSRIFLKCYLQTDLASVEGSRCESQYLP
DMRRGGR

mRNA from alignment at CM002459.1:488903..490635+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2478 ID=rna2478|Name=rna2478|organism=Nannochloropsis gaditana|type=mRNA|length=1733bp|location=Sequence derived from alignment at CM002459.1:488903..490635+ (Nannochloropsis gaditana)
ACAGATGCTGTCGTGTACGTCGTGGTACGCTTGGAGAAACATAGTGCGTG
AAGGATTGTAGCTGAGGCCGTTCAACAGCGGGCAGCACACTCTTCGCGCC
CGCCTCCGGCGACGAGCCTGCTCAAGAATATGAGACGCCAAAAAACACGA
GAATAGACAGTGAGCTGTCGACTTTCGTGCTACATGCTTCGTCCGTCGTA
GATtagccttcttcctccgtccctttgTGATTCGGCCCTGCGTTCTTTTT
GCCTTCATCAGGATGGTTAGGACCCGACAGAGcaacgggggaaggagaag
tgctTTGTCTATTGAATTGAAGGCTTCACTTCCACGAGAAGTCGGCAGCG
CGCTTTTTGTATTCATTTCGTTCCTCTTGATTTATATCTTTTGGTCTTTT
GAGATGAGGCGGCGGCATTCGGGCCGCTTGCTTTTTGTCTTCTGGGGCGA
TGTAGCTACTATCTCCTCATCAGTGCTTTTACTTAGCAGGAATGATGGCA
GATTATTATAATTTCTGTGGTGAACGCAAGTAAAGAAGGAGTTGTCGTCG
ATAGGAACAACGGGATATCGTGCAGAGTTAGAGTATCGCATCGTGAGGTG
CATTTTGTAGTCAACACCATGCTAAACAACTCAATGCTAGACATCTTGCT
CTTACAATCAGCAGGCTAAATGAGATCTTCACGTGGTGCTCAAAGCTCAA
GCTGACCATGGTTCCCGTTTTACCTCTCACTGCAACGGGACAGCCTACTA
CATCGCTTTTATCCTCTCTAGGAAGACGTTTGTCTGTCGCCTCGCGCGCC
TCGTTGCTACATGGCCGCCgcgcggggaggagcacatcaagggagggaac
caCGCCGCGACAATTGCTGCAAGAGGGGAGCAAGCAGGGGCACCGCATCA
TGGGAGTAGATGCAACGAAAGTCGGAAGAATTGGTGACGAAATAGACGGC
GCCACTCGTAGCGAGAACAGCAACGACAAATTACCTCCGTCAAGCTCTCC
CTCTCAAGCTGCATGGCGTGAGCAACTGCGCAAGACCCTACGCGGCAAGC
TTATGTTGGTAACCAATGCCTGGACGGCCACTTTGATACTCACAATCCTC
CTTGCCGTGGTTTTCCGCGCATTACAGCCGACAGAAGAGCCTGGGCTGGG
CGTCACTCACTATGCTTGGCGTGGAGATCCTTCGGATCCGAATCGGCTGA
GCTTGGAAGAACTGGATTTGGATGTTCGCGGGATAGGTCGTTTCAAGATG
GAATTTGGTCCCAGCAAAGTGCAGCTTTACCCCATGGAGGCTGATGAAGA
GGTGAGGGTGGGGCATCGGGATGAGGCTGCTCTTGCTGATTTTTTGCTCG
CAGAGATATCTATGCCGAGCTGGAACGTGACCTTAGGGCATGATTTTACA
ATCGTTTCTGCTGTAAAAGCCAGTACATTTTTCTCTGCAAGGCGTTCGCC
GTTGACGAGCAAAAGAGAGCAGGTAATCTTAAGTGGAAACTTTCATGGCT
ACGTAACTTTGTTCGCGTCGTTGCCCTCACGCATCTTTTTGAAGTGCTAC
CTTCAAACCGATTTGGCCAGTGTGGAGGGTTCTCGATGTGAATCCCAATA
TTTGCCGGACATGAGACGTGGCGGGAGGTAGAGAGAGAAAATgatgtgaa
gaggaagagatagGTTTGGAAAAAGCATGTACAAAGTAATTACGATGGAG
ATTTTGGTGCTCTTGCCAGGAAGAATATATGCT

Coding sequence (CDS) from alignment at CM002459.1:488903..490635+

>rna2478 ID=rna2478|Name=rna2478|organism=Nannochloropsis gaditana|type=CDS|length=924bp|location=Sequence derived from alignment at CM002459.1:488903..490635+ (Nannochloropsis gaditana)
ATGGTTCCCGTTTTACCTCTCACTGCAACGGGACAGCCTACTACATCGCT
TTTATCCTCTCTAGGAAGACGTTTGTCTGTCGCCTCGCGCGCCTCGTTGC
TACATGGCCGCCgcgcggggaggagcacatcaagggagggaaccaCGCCG
CGACAATTGCTGCAAGAGGGGAGCAAGCAGGGGCACCGCATCATGGGAGT
AGATGCAACGAAAGTCGGAAGAATTGGTGACGAAATAGACGGCGCCACTC
GTAGCGAGAACAGCAACGACAAATTACCTCCGTCAAGCTCTCCCTCTCAA
GCTGCATGGCGTGAGCAACTGCGCAAGACCCTACGCGGCAAGCTTATGTT
GGTAACCAATGCCTGGACGGCCACTTTGATACTCACAATCCTCCTTGCCG
TGGTTTTCCGCGCATTACAGCCGACAGAAGAGCCTGGGCTGGGCGTCACT
CACTATGCTTGGCGTGGAGATCCTTCGGATCCGAATCGGCTGAGCTTGGA
AGAACTGGATTTGGATGTTCGCGGGATAGGTCGTTTCAAGATGGAATTTG
GTCCCAGCAAAGTGCAGCTTTACCCCATGGAGGCTGATGAAGAGGTGAGG
GTGGGGCATCGGGATGAGGCTGCTCTTGCTGATTTTTTGCTCGCAGAGAT
ATCTATGCCGAGCTGGAACGTGACCTTAGGGCATGATTTTACAATCGTTT
CTGCTGTAAAAGCCAGTACATTTTTCTCTGCAAGGCGTTCGCCGTTGACG
AGCAAAAGAGAGCAGGTAATCTTAAGTGGAAACTTTCATGGCTACGTAAC
TTTGTTCGCGTCGTTGCCCTCACGCATCTTTTTGAAGTGCTACCTTCAAA
CCGATTTGGCCAGTGTGGAGGGTTCTCGATGTGAATCCCAATATTTGCCG
GACATGAGACGTGGCGGGAGGTAG

Synonyms

Publications