rna2473, rna2473 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2473
Unique Name	rna2473
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2745
Alignment location	CM002459.1:472487..475724 +

Link to JBrowse

Properties


Property Name	Value
Product	sh2 domain containing protein
Orig transcript id	gnl\|cribi\|Naga_100004g114.9112.mrna
Orig protein id	gnl\|cribi\|Naga_100004g114.9112
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:472487..475724 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g114	gene2366	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2473	rna2473-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28181.1	cds2465	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:472487..475724+
coding sequence from alignment at CM002459.1:472487..475724+

mRNA sequence

>rna2473 ID=rna2473|Name=rna2473|organism=Nannochloropsis gaditana|type=mRNA|length=2745bp
CCGCTGGATCTGCCAGGATACACTCGCCCGTCACGCGACGTGTCACGTGC
CCGTGTCCCAGACACCGTCGGGGGCACATGTCTCATCTATTGCATGAAAA
AATGCTCTAGCACTGTCTCGTGCTTTGGTATTTGGAGCTCGAGGTGGCGT
CGCGTCGCGTTCAGGCGGGTCTGACCACTCGTGCCATCTCTGTTGTCGGA
ACGGCAGAGCCCGTCGCTCCTACCCTGCCTTCCTGGCTGTCACACGTATT
GACACACAATCTTTCCCCTCCTGCAATAAAGTGCGAGCCTTACTTTACGC
AGGAGTGTACCAGTGCAGCAGGCGCGTGCCCACTACATTTGGATAGAGAA
CAGGGCAAAGCAAGACCTCCTCCACCTCCTCCTCCCCATCCTAGAGGGTG
GTCTGTCCGATTGCCAAGCTGGAAACACTATCAACTTATCAGATCCATTC
ACGTGTTGGGTTTCGACGGAAGTCATAAAATGACAGGCACGTCCGACATC
GAGCTCGGCAAACTGTCTAATGCGTCGTCTAATCTCAAGCTCAGCGGGAG
CGATGAAGGTCAAAATCGGAAAGGTTACGACGCGCCAAAACCAAGTTCCG
CGACATCATTGCGGTGGAATATCCGGAAGCTCAGCGTGCCCATAAAAAGA
AAGCACCTCGCCAGACTACAGGGCAATTTGGAATTCCTGGGTCAGCAACA
CGGTTCGGGACGCGATACCAATATGCCATTCCGAGGCAACGGGGGCGACG
TCCTCACAAACAGTAGGGCGGGGGGTCGAGGCACCACGAGGGGTACCTCC
ATCAATGAGAGTCTAGGTAGTAAGACAGCAGAGCGGCACATTTTATATAA
TGTGGTCGGACACGCCGAGAAAGGGCAAATGTTGGCCTTGATGGGGGCGT
CAGGAGCCGGCAAGTCATCTCTGCTTGATTGCATATCCCTGCGCAACCAT
CGCTTTGAGGGCTGCGTGTACTTGGATCGGAATCCGGTAGACACGCACTT
TTTCTCGACAAGTGCGTACGTACATCAGGTAGACCTCTTTTTCGCGACAC
TGACAGTCCGAGAGCACCTGACGTTTCATGCCATGGTGCGTGTGAAGCAG
GAAGTGCCGATCGCAGACCGTCTACGTAGAGTTGAAGAGGTAATCGATGC
AGTCAATTTGACCAAGGTTGCTGACTCCCTGATCGGCGGACCTCAAGCTT
TCATCCGAGGCGTCTCGGGGGGGGAGCGGAAGCGCCTGTCCGTTGCGACA
GAGCTCCTGTCGGACCCGGAGATCATCTTCGCCGATGAGCCAACTTCAGG
TTTGGACGCGTTCATGGCACTATCGGTGTGCAAGATCCTCAAGGGATTGG
CTGACAGTGGGAGGCTGGTGGCATGCGTCATCCACCAACCATCATCCGAG
ATATTTGAGCTTTTCACTCATCTGATGCTTCTGGCCAGGGGCCAGACGGC
ATATTTCGGTACGCGTGCAGGCGGTGTCGAATATTTCGCATCGATGCTTG
GTCTCGAATGCCCGCAATTTTACAACCCGGCAGACTACCTGATCGAGAAG
CTGGCGGTCAACGTGCTGTTGGAGAAGCCTGAAGTGGCTGTGGAAGATAT
GCTACGAGTATATCAGTCGTCGGAACTTGCGCGAGATAACGAGGCCTGGA
TGGCGGACGTGGAGGAGACCGCAGGTTCAGGAATGGGCGTGGCTGCTCTA
GTTTCCAGTCGGGAATTTCCGGCAACGTCGTGGACCCAGTTCGTGGAGAG
CTACAAGCGCACGGTTAAGTCCTACGGACGAGAGCCTGTGCTGGCTAAGG
TCCGCTTAGGGCAGGCGATCTCGATGGGGTTGATATTGGGTTTGGTGTAT
CTGCAGCAGCCGTTTGATTCAAGTGCTACCAAGAATCGTCTGGGCGCCAT
GTTCCTGCTAATTATGAATCAAAGCATCGCATCCATGTTCACAGTTTCGC
AAGTCATTCCCAAGGACATGGCTGTTTTTATGCGCGAGTATTTGACAAGC
GCCAACCGGCCATCGTCCTACTTCCTGGGCCTTTCTCTTGCAGAGGTCCC
GTATCAAGTCCTTTTCCCCTGTATTTTCGGGTCTATAGCTTACTGGCTAA
TAGGTTTTGCACCAGAAGCGAGTCGATTTTTTATCTTCATCGTGACCCTA
GTGCTGATGGCCAACGCGTCGTGCTCCCTTGGGTATGCTCTTTCCACTCT
CACTGGTCATGATGGCGTAGCAGTGGCGCTGGGACCGGTTTTAATGTTGC
CTATGAGTCTATATGCCGGCGTGCTGCATTCATCAGACCACGTTCCCTGG
TACTTTGTGCCGTTGGACAAGGTTTCCATGATCAAATATGCATTTCAGGC
TATTGTCCTAAACGAGTACGGTTCAGATAAGTACACACCGCAACTCCGCA
ACTTCGTATTCGAGTACATCGGCGTGCAGGAAGGGCAAATTGGCTTTTGT
ATTGCGATGCTAGTTGTGCTCCTTTTCGGATTCCGCTTCCTTGCTTACGT
CTTCCTTCTAATTCGAGCAAAGCGAGCATTGATGTAAGATTGTCTGGCGA
GAGCATCATGCTGTAGAATTTTAAATCGACAAATTAAGCATGCTCTAAAT
CAGATGTGTCCTAAAGCACATCGGTATGATCGGCAGCTGCTGTGTGTGTG
GATAAGATCGTGTGTCCAGGACAGCTGTGTATCGTGCAGCATTTGCACAA
CTTTGAGGAAATAACAAGTGGACGAGCTAAATATCGAACCTCATT

protein sequence of rna2473

>rna2473-protein ID=rna2473-protein|Name=rna2473|organism=Nannochloropsis gaditana|type=polypeptide|length=893bp
MFARFHLPGHHAKSARSKAKEVNGNGSHTQLPTSSSQDVPSRSPPFALHS
GGATRDPLSPCRLGYLYSAPLVHKAGGQAKELDMQDGMHIDIGQELGRLK
HTLHDAQRRILFRAEVATVKNCRKLLTIGCRMLHYTGIGKPSCLIFEKEK
PVGETNVLSIETLTELFAAGGVRTQLVFVSARHSEIVGRAFIAAGVRHVV
AMKWDAKVSDRAACIFAEFFYLSIAMGRTVRQAFEVASTAAVTETGVSSE
DEQFLLLPADGEHDLAVFDDAEMGEFVDESPPPVPNTCDPPPVPFVGRNV
AAQEVIGLLSMVSQGNRCITVRGRPGVGKTALASKVCQYLAERNQFDAIY
MVPLRRKEYRSYEKETLCKVIGAAIGFEDASNEREIVFLLQDKHPSGRVI
MVLDGPDRFFNRSNSLVQVLSYLLSRIHGLHLLVTAEGSVLGSGSGRLES
SSEKVVHLGPLSDVATAHMLANIAPPGFDLEEMMSRPYATREEAYAELAA
SPVIRELRGHPKAIVMFAPLLEDHRLEDLYDKAKQCYVDASQVVEVDTPS
MGEEESGIGGGGGGGGGGGGGGGGGGSRISSAENGRDEKRELDALALARE
TEEARQFLREPTSQRLWLEVVRQGGARQSSSMHQGVPWYRLTDALQEELR
KALIDALRLSRFHIEDFCATHCSTNGNGGAEGSKAFSPPAVSETKQDSKV
ADGATISIADKDGTIRGLEPGDIQFIKDRLVIRTPESDLVRITDFAVFCE
GWVPAQNSIALLCREWLCNKPRLLHGFLSRKETEALLQGYKEGTFLFRFS
TSHLGLLSLSFVGKSRKNYPNDEEGEKKAKALHIRHFLVQVEEDRRCVVF
MEPGRSRHASLEDLIMSSASLLEFYPGVPKAHALTQMRRYKSS

mRNA from alignment at CM002459.1:472487..475724+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2473 ID=rna2473|Name=rna2473|organism=Nannochloropsis gaditana|type=mRNA|length=3238bp|location=Sequence derived from alignment at CM002459.1:472487..475724+ (Nannochloropsis gaditana)
GGAAAGGGCGAGAAAGCCTATGTTTGCAAGATTTCACCTCCCCGGCCACC
ACGCCAAGTCCGCAAGATCCAAAGCCAAGGAAGTAAATGGCAACGGAAGT
CACACACAGCTTCCGACATCATCTAGTCAAGATGTACCCtcccgatctcc
tcctttcgcgcTGCACTCTGGAGGGGCTACTCGAGATCCTTTATCGCCCT
GCCGACTTGGATATTTATACTCGGCCCCTTTGGTGCACAAGGCAGGTGGG
CAGGCCAAAGAGTTGGACATGCAGGACGGGATGCACATCGACATAGGCCA
AGAGCTTGGCCGGCTGAAACATACGCTTCATGATGCCCAACGCCGCATTC
TCTTTCGTGCCGAAGTTGCGACTGTGAAGAATTGCAGAAAGCTTTTAACT
ATAGGGTGTCGGATGCTACACTACACGGGAATTGGCAAGCCGTCCTGCTT
GATATTCGAGAAAGAAAAACCTGTCGGAGAGACCAACGTGTTGAGCATTG
AGACCCTAACTGAGCTCTTTGCAGCAGGAGGGGTCAGGACTCAGCTGGTA
TTTGTTAGCGCCCGGCATTCAGAAATTGTCGGCAGAGCTTTCATCGCTGC
GGGGGTGCGGCACGTGGTGGCAATGAAGTGGGACGCCAAGGTCTCGGACC
GCGCCGCCTGCATTTTCGCCGAATTCTTCTATTTGTCAATTGCCATGGGA
CGGACTGTGCGGCAGGCCTTCGAAGTAGCCAGCACGGCAGCGGTGACAGA
GACGGGGGTCTCGTCAGAGGATGAGCAGTTTCTCTTGTTGCCGGCGGACG
GGGAGCACGACCTAGCCGTGTTTGACGACGCGGAGATGGGCGAGTTCGTA
GACGAATCGCCCCCTCCCGTTCCTAACACATGtgatcccccccccgtccc
atTTGTCGGGCGAAATGTGGCAGCGCAAGAAGTCATAGGACTGCTCTCGA
TGGTCTCCCAGGGAAACCGCTGCATCACTGTGCGGGGCCGGCCGGGGGTA
GGGAAGACCGCCCTGGCCTCGAAGGTCTGCCAGTATCTGGCCGAGCGAAA
CCAATTCGATGCTATTTATATGGTTCCGTTGCGCCGAAAAGAGTATCGAT
CTTACGAGAAGGAAACGCTCTGCAAGGTGATTGGCGCGGCGATAGGCTTC
GAGGACGCTTCGAACGAGAGAGAGATCGTCTTCCTTTTGCAGGATAAGCA
TCCTTCTGGCCGCGTTATCATGGTGTTGGATGGGCCAGATCGCTTCTTCA
ATCGTTCCAACTCCCTCGTCCAAGTCCTCAGCTACTTGCTTTCGCGGATA
CACGGTCTCCATCTGCTCGTCACCGCGGAGGGCTCCGTTTTGGGAAGCGG
TTCGGGGCGCTTGGAAAGCTCATCCGAGAAAGTGGTGCACCTGGGACCGT
TGTCTGATGTAGCCACCGCACATATGCTTGCAAACATCGCCCCGCCTGGC
TTTgatttggaggagatgatgagCAGGCCGTatgcgacgagggaggaggc
gtacGCGGAACTAGCGGCTTCTCCTGTCATACGAGAGCTGCGGGGTCATC
CAAAGGCGATCGTCATGTTCGCTCCTCTTCTGGAGGATCATCGGTTGGAA
GATTTGTACGACAAAGCCAAGCAATGCTACGTGGATGCTAGCCAGGTTGT
GGAAGTTGACACGCCCTCgatgggggaagaggaaagtggcataggaggag
gaggaggaggaggaggaggaggaggaggaggaggaggtggaggagggtcg
aGAATCAGCAGTGCAGAGAACGGGAGAGACGAAAAGCGGGAGTTAGATGC
GCTGGCGTTAGCGCGGGAAACAGAAGAGGCTCGACAGTTCCTGCGAGAGC
CTACTTCTCAGCGCCTGTGGTTGGAGGTTGTACGACAGGGCGGAGCTCGG
CAGTCGTCAAGTATGCACCAAGGAGTTCCTTGGTATCGCTTGACCGACGC
GCTGCAAGAGGAGCTCCGCAAAGCCTTGATCGATGCATTAAGGCTATCGC
GATTCCATATCGAGGATTTTTGCGCCACGCATTGCTCCACCAATGGGAAT
GGAGGCGCTGAGGGCAGTAAAGCCTTCAGTCCGCCTGCAGTATCTGAAAC
AAAGCAGGACAGCAAGGTCGCTGACGGAGCCACTATTTCCATCGCGGATA
AGGATGGTACCATTCGGGGCCTTGAGCCAGGAGATATTCAATTCATCAAA
GACCGATTAGTCATTCGAACGCCGGAGAGTGATTTGGTGCGTATCACGGA
CTTTGCGGTGTTTTGTGAGGGCTGGGTCCCTGCACAAAACTCGATCGCTT
TGCTATGTAGGGAATGGCTTTGCAACAAGCCACGGCTGTTACATGGCTTT
TTATCGCGGAAAGAGACAGAAGCCCTGCTTCAGGGGTACAAGGAAGGTAC
ATTTCTGTTCCGTTTCAGCACGAGCCACCTAgggcttctttctctctcct
tcgtcgGCAAAAGTCGCAAGAATTATCCAAACGATGAGGAAGGTGAAAAA
AAGGCAAAGGCTTTGCACATACGACATTTTTTGGTccaagtggaggaaga
ccggAGATGCGTGGTTTTCATGGAGCCCGGTCGCTCCCGACACGCCTCGT
TGGAAGACTTGATCATGTCCTCTGCAAGCTTGCTAGAATTCTATCCTGGC
GTTCCTAAAGCTCATGCCCTCACGCAAATGCGGCGTTACAAAAGTTCCTA
AAGCTTAGGAGTGAGGATATCTTCTATTTAGAATTTTTGTTAAATTTGGA
AATTTTTGGACAGAAAAAAGTACATCCGGAAATCGAGAGGAATTTCGTGC
CTAACTCGATTTGACCGAAAACATATTGTCAATATGTATAGCTAACAATT
ATTCATTGGTATTTGGAGGATTACTAAAAAAATGCGGCACGTGTATGAAG
TGATGGAAGGgatattttttttttcaaatcaTCCGTTAAAAACGTACGGG
GTTTTGGCTTTTTTGTGTAACGTGTTTTTTAAATCCATGTCTGGCCCAGG
GCACGCGAAAAGATTGGTCCACCCGCGTGCCTGTGTATAAGTAGTTTACC
CTCTCTGTGGTCTACGAGGGCGCCCAGCTGCTTTCACTTTGCCCGATGCC
GTAATCGTCTAACTAATTGTGGCCCAGTATCTGCCCCACCAGATTCGAGT
TTTAGCTTCGCTCGGTGTCGGTAGTACGCGAGAGCTCAGGGGAGGTCGAG
TTACGAAAGCAGCGCTCGGAGAAGACGACAGTATTTGA

Coding sequence (CDS) from alignment at CM002459.1:472487..475724+

>rna2473 ID=rna2473|Name=rna2473|organism=Nannochloropsis gaditana|type=CDS|length=2682bp|location=Sequence derived from alignment at CM002459.1:472487..475724+ (Nannochloropsis gaditana)
ATGTTTGCAAGATTTCACCTCCCCGGCCACCACGCCAAGTCCGCAAGATC
CAAAGCCAAGGAAGTAAATGGCAACGGAAGTCACACACAGCTTCCGACAT
CATCTAGTCAAGATGTACCCtcccgatctcctcctttcgcgcTGCACTCT
GGAGGGGCTACTCGAGATCCTTTATCGCCCTGCCGACTTGGATATTTATA
CTCGGCCCCTTTGGTGCACAAGGCAGGTGGGCAGGCCAAAGAGTTGGACA
TGCAGGACGGGATGCACATCGACATAGGCCAAGAGCTTGGCCGGCTGAAA
CATACGCTTCATGATGCCCAACGCCGCATTCTCTTTCGTGCCGAAGTTGC
GACTGTGAAGAATTGCAGAAAGCTTTTAACTATAGGGTGTCGGATGCTAC
ACTACACGGGAATTGGCAAGCCGTCCTGCTTGATATTCGAGAAAGAAAAA
CCTGTCGGAGAGACCAACGTGTTGAGCATTGAGACCCTAACTGAGCTCTT
TGCAGCAGGAGGGGTCAGGACTCAGCTGGTATTTGTTAGCGCCCGGCATT
CAGAAATTGTCGGCAGAGCTTTCATCGCTGCGGGGGTGCGGCACGTGGTG
GCAATGAAGTGGGACGCCAAGGTCTCGGACCGCGCCGCCTGCATTTTCGC
CGAATTCTTCTATTTGTCAATTGCCATGGGACGGACTGTGCGGCAGGCCT
TCGAAGTAGCCAGCACGGCAGCGGTGACAGAGACGGGGGTCTCGTCAGAG
GATGAGCAGTTTCTCTTGTTGCCGGCGGACGGGGAGCACGACCTAGCCGT
GTTTGACGACGCGGAGATGGGCGAGTTCGTAGACGAATCGCCCCCTCCCG
TTCCTAACACATGtgatcccccccccgtcccatTTGTCGGGCGAAATGTG
GCAGCGCAAGAAGTCATAGGACTGCTCTCGATGGTCTCCCAGGGAAACCG
CTGCATCACTGTGCGGGGCCGGCCGGGGGTAGGGAAGACCGCCCTGGCCT
CGAAGGTCTGCCAGTATCTGGCCGAGCGAAACCAATTCGATGCTATTTAT
ATGGTTCCGTTGCGCCGAAAAGAGTATCGATCTTACGAGAAGGAAACGCT
CTGCAAGGTGATTGGCGCGGCGATAGGCTTCGAGGACGCTTCGAACGAGA
GAGAGATCGTCTTCCTTTTGCAGGATAAGCATCCTTCTGGCCGCGTTATC
ATGGTGTTGGATGGGCCAGATCGCTTCTTCAATCGTTCCAACTCCCTCGT
CCAAGTCCTCAGCTACTTGCTTTCGCGGATACACGGTCTCCATCTGCTCG
TCACCGCGGAGGGCTCCGTTTTGGGAAGCGGTTCGGGGCGCTTGGAAAGC
TCATCCGAGAAAGTGGTGCACCTGGGACCGTTGTCTGATGTAGCCACCGC
ACATATGCTTGCAAACATCGCCCCGCCTGGCTTTgatttggaggagatga
tgagCAGGCCGTatgcgacgagggaggaggcgtacGCGGAACTAGCGGCT
TCTCCTGTCATACGAGAGCTGCGGGGTCATCCAAAGGCGATCGTCATGTT
CGCTCCTCTTCTGGAGGATCATCGGTTGGAAGATTTGTACGACAAAGCCA
AGCAATGCTACGTGGATGCTAGCCAGGTTGTGGAAGTTGACACGCCCTCg
atgggggaagaggaaagtggcataggaggaggaggaggaggaggaggagg
aggaggaggaggaggaggtggaggagggtcgaGAATCAGCAGTGCAGAGA
ACGGGAGAGACGAAAAGCGGGAGTTAGATGCGCTGGCGTTAGCGCGGGAA
ACAGAAGAGGCTCGACAGTTCCTGCGAGAGCCTACTTCTCAGCGCCTGTG
GTTGGAGGTTGTACGACAGGGCGGAGCTCGGCAGTCGTCAAGTATGCACC
AAGGAGTTCCTTGGTATCGCTTGACCGACGCGCTGCAAGAGGAGCTCCGC
AAAGCCTTGATCGATGCATTAAGGCTATCGCGATTCCATATCGAGGATTT
TTGCGCCACGCATTGCTCCACCAATGGGAATGGAGGCGCTGAGGGCAGTA
AAGCCTTCAGTCCGCCTGCAGTATCTGAAACAAAGCAGGACAGCAAGGTC
GCTGACGGAGCCACTATTTCCATCGCGGATAAGGATGGTACCATTCGGGG
CCTTGAGCCAGGAGATATTCAATTCATCAAAGACCGATTAGTCATTCGAA
CGCCGGAGAGTGATTTGGTGCGTATCACGGACTTTGCGGTGTTTTGTGAG
GGCTGGGTCCCTGCACAAAACTCGATCGCTTTGCTATGTAGGGAATGGCT
TTGCAACAAGCCACGGCTGTTACATGGCTTTTTATCGCGGAAAGAGACAG
AAGCCCTGCTTCAGGGGTACAAGGAAGGTACATTTCTGTTCCGTTTCAGC
ACGAGCCACCTAgggcttctttctctctccttcgtcgGCAAAAGTCGCAA
GAATTATCCAAACGATGAGGAAGGTGAAAAAAAGGCAAAGGCTTTGCACA
TACGACATTTTTTGGTccaagtggaggaagaccggAGATGCGTGGTTTTC
ATGGAGCCCGGTCGCTCCCGACACGCCTCGTTGGAAGACTTGATCATGTC
CTCTGCAAGCTTGCTAGAATTCTATCCTGGCGTTCCTAAAGCTCATGCCC
TCACGCAAATGCGGCGTTACAAAAGTTCCTAA

Synonyms

Publications