rna2460, rna2460 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2460
Unique Name	rna2460
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1926
Alignment location	CM002459.1:436592..438978 -

Link to JBrowse

Properties


Property Name	Value
Product	solute carrier family 36 (proton amino acid symporter) member 1
Orig transcript id	gnl\|cribi\|Naga_100004g98.9216.mrna
Orig protein id	gnl\|cribi\|Naga_100004g98.9216
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:436592..438978 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g98	gene2353	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28285.1	cds2452	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2460	rna2460-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:436592..438978-
coding sequence from alignment at CM002459.1:436592..438978-

mRNA sequence

>rna2460 ID=rna2460|Name=rna2460|organism=Nannochloropsis gaditana|type=mRNA|length=1926bp
ATGCAGGGTGCGAATTTAATTTGTGCCCTTGGCCGTCCAAAAGGGGCGCT
CTGGCAGCGACTGTCGTTGCCTACCAGAGACCTGCTATTAGCCGATCGGA
TTTCTACGGGCTCCTCTTCCCCATTTTCCTCCTTCTCCTCTACAACGTAC
GACTACATAGTCGTTGGAGGGGGTAGCGCCGGGTGCCTTGTAGCGAATCG
TCTTTCTGAAAACCCTCATGTGAAGGTCCTTCTTCTCGAGGCGGGGGGGG
ACGACCGCCGCATCCCCTTCGTTCACATACCTGTGGGATATTTGTGGAGC
ATTTCTAACCCTCGGGTTGATTGGTGCTTTCAGACGGAGCCTGTGCCAGG
TCTGCATGGCCGATCGCTCGCATATCCGCGGGGAAAAATTCTAGGTGGAT
GCTCATCAATCAATGGCATGATTTACATGCGTGGTCAAGCTGAGGATTAC
GACGGATGGGCTCAAATATTTGCTGAGGATGAGACTCGCGTCGGTGCGAA
AGGAGCGAATGTGAAAAGGAAAGAGAGCGCGAAGGACGGGGAGAACGGAG
AGGTCTGGTCTTGGCGGGGAGTTCTCCCTGATTTCACGAAATCCGAGGAC
TTTGCGGCGGGAGCATCTATCCAAGAGGTGGAGCGAGGCAGTGAGGGTGG
CGACCTATACAAGAGCAGCCCACCCAAGCAGGATGCCATACATGGAGTCG
GGGGCGAATGGCGCGTTGAAAAGCAGCGTTTGAGTTGGAAGGTGCTCGAC
ACATTTCGCGATGCCTGTGAGGAGCAGGGTATCCCAAAGGTGGAGGACTT
CAACGGGGGCAATAACTTCGGCTCCTCTTATTTCCACGTCAATCAACGGG
GAGGCTGGCGCTGGAACACCTCCAAGGCCTGGCTGCATCCCATCATGGGC
CGGCGAGCCAACCTGACGGTCCTCACGCACGTGCACGTCCTCAAAGTCCT
TCTGGACAAGAGCAATGGTTCTGCCCTCGGCGTGGAATTCGCTCGCAGCG
AGGTCGGCACCGGCGTCGTGGAGAGAGCCTACGCAGGCTTGGAGACCATT
CTCGCAGCTGGTGCCGTAGGAAGTCCACACCTACTGCAGCTGAGTGGCGT
AGGTCCTCCCGCGCCCCTCCGCAGCGCTGATGTTCCCGTGAAGCACGCTC
TGTCGGGTGTGGGTGCCAACCTGCAAGACCATCTCCAGCTTCGCATGGTG
TTCCGGATCAGCGGCCTTCCTACGCTGAACGATGAATACGCGAGCTGGTG
GGGTCGGGTCAAAATGGGCGTGGAGTACCTGTGGGATCGCCGGGGCCCAC
TCAGCATGGCCCCCTCCCAGGTGGGGGTCTTCTGCAAGAGCGAGGCTACC
CGGAGGCGCCCAGACTTGGAGTTCCACGTCCAGCCCTTGAGTCTGGACAG
ATTTGGAGAGCCTTTGCACCCTTTCCCCGCCTTCACTGCCAGCGTCTGCC
ACTTACAGCCTACGTCTCGGGGCAGCGTCCTACTTCGCAACCGCGACCCC
CGCGCTCCGCCTCGCATTCAGCCAAACTACCTGGCCACGGCCAAAGACCG
TGCGGTGGCCGCAAGAGCCCTTCGTCTCACGCGCCGGCTCGTTCTAGGCT
CGCGGGCCTTCCTGCCTTTCAAACCCGAGGAGTATGCCCCGGGGATCGCG
TGTCAGAGTCAGGCCGAGTTGGAGGAGGCGGCAGGGAGGGTTGGCACTAC
GATCTTCCATCCGGCAGGGACTTGCAAGATGGGCCGCGCTGACGATCCAT
TGGCGGTACTAGACGCGAAGTTGCGCGTTCGAGGAATAGAGCGCTTGAGA
GTGTGCGACACGAGCGCAATGCCTGTGATTACTAGCGGGAATACGAGCAG
CCCAACCCTAATGATTGCGGAGAAGGCGAGCGACTTCTTGCACGCGGCCC
ACGGTACGGCCGCAGACAAGCCATAG

protein sequence of rna2460

>rna2460-protein ID=rna2460-protein|Name=rna2460|organism=Nannochloropsis gaditana|type=polypeptide|length=499bp
MQGEHQSMHPRANYWICLRRSAVLSISIISSDQHLSPLSPHSIHSPLGFP
QDLLREEQGIVVENYEELAGAVFGPRAFRFCQTLMATLTLIYTSGFVIVI
SSSLYDVMPAVPRAMWCAIVFPILTLLSWVPFMEDLWFVSLLGLGTYLFG
VVGSTLFVAARDFDPPPAPMAWHWEGAAHFYGVAVYSLEGINLTLPVSAS
MKSLRKPPLVMTVGVCLFAGITAFYASFAYAAGLGSCDIIIQCLGPGPFV
NVIRVALALSLLATHPVYLIVASEIFERALLGDPSVPVPEALDGAQETEE
AGLEDETEGAGTAMTGAMLPVVCRSGSHQNSSWVDHSEDGRSHAKATSPQ
RLEVSVQGEDNGREDGLHERESMGASTQSNSRTSASLPLPASISSFASRR
LATRQAQARLIRAVEVFLTCMVGALIPNLGVFTSLVGATFVTIIGFIFPA
AMWLELQREDTHASFWAKARVYGIAGLVIAAGLAAMVVGTVEGLRNLSS

mRNA from alignment at CM002459.1:436592..438978-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2460 ID=rna2460|Name=rna2460|organism=Nannochloropsis gaditana|type=mRNA|length=2387bp|location=Sequence derived from alignment at CM002459.1:436592..438978- (Nannochloropsis gaditana)
ACGGGCGGGCTAGCGATGTGAATCGCTATTATCCCAGATAATCCTAGTTG
TATTAAACATGGCTTCAAAGAGACCATATCACCACCAGCGCGCCCCTTCA
GGCAGATCATATCGCAGACGTAGAGCATGACGTTAGAATGGACTGGCGGT
TTTGGCAACGTGAGACGAGCAGGAGAGATTGCTGTCGAAGTATTTGTCTG
TCGAGTAGAGTATCGTCTCTTAACCTTCTTCCGAACGGACATCGCGGGAC
AAATTTTCTTAAACTCCCTGAAAGTTCTCAACCAGCGTCAAATTGTTGTG
GTGCTTTCTGGTGATGCTGCTTTGGAGAAATGACAGTATCACGCCCTCCG
CATGGGGGCATGAGTCGATCAGATTGATGTGAGACGCTTTGTTTAACTGA
CTGTCGCACAGCCCTAGTGGTGGTATACAGCAGCGATATCTTCAATCTTT
TTACGTTTTCCTCTGTATTTGCACAGGACTCCACATGGCTTCATTTTCTC
CACCACGTTCTGTCACGCCAGACGGCAGTCCTCCACCTGCCTCGTCCAGC
CTCGCCTCGCATTCGGGGGGCTCAGGCTACCGACAACTCCGCCATCTCTC
ACAAAGCACAACAGAAATGTCTGCCTCTGGACCTCCGCAAGAAAAGACAA
GCACGCGGATCGCGATCCTCATCTTTTTCAAGGGTCTCTTTGGTGCCGGA
GTGCTCGCCATCCCCGGAGCCTTCGGCAGTACAGGGGTCCCCCTGGGGCT
CCTCATTTTCTTGGCCGTCTGCACTCTGTGCCTTGGTACCATGCTGATGC
TTCTACGATGCAAGGTGAGCATCAGTCCATGCACCCACGCGCTAATTACT
GGATTTGTCTCCGTCGTTCCGCCGTCCTGTCGATCAGTATCATCTCCTCG
GACCAACATCTCTCCCCACTCTCCCCTCACTCTATTCACTCGCCCCTTGG
ATTCCCTCAGGACTTGCTTCGAGAGGAGCAGGGCATAGTCGTTGAGAACT
ATGAGGAGCTGGCCGGCGCGGTCTTCGGACCTCGGGCCTTCCGCTTCTGC
CAGACCCTGATGGCCACTCTGACCCTCATCTACACCTCCGGCTTCGTCAT
CGTCATCAGCAGCAGCCTCTACGACGTGATGCCAGCCGTCCCCCGGGCCA
TGTGGTGCGCCATCGTCTTCCCCATCCTCACCCTGCTCTCCTGGGTCCCG
TTCATGGAAGACCTCTGGTTCGTGTCCCTGCTGGGTCTGGGCACCTACCT
CTTCGGCGTGGTGGGCTCCACCCTCTTCGTGGCGGCCAGAGACTTCGACC
CCCCGCCCGCCCCCATGGCCTGGCACTGGGAGGGTGCCGCGCATTTCTAC
GGCGTCGCTGTCTACTCCCTGGAAGGTATCAACCTGACGTTGCCGGTGTC
CGCGTCTATGAAAAGCTTGCGGAAGCCTCCCTTGGTCATGACCGTGGGGG
TCTGTCTCTTTGCAGGCATCACCGCCTTCTATGCGTCCTTCGCCTACGCC
GCGGGGCTTGGGAGCTGTGACATCATCATCCAGTGCCTGGGCCCGGGCCC
CTTCGTGAACGTCATCAGGGTCGCCTTGGCGCTCTCGCTTTTGGCCACGC
ACCCGGTCTACCTAATCGTAGCGTCGGAGATTTTTGAGAGGGCTCTCCTC
GGAGATCCCTCCGTGCCGGTCCCAGAGGCCTTGGACGGGGCCCAGGAGAC
GGAGGAGGCGGGGCTGGAGGACGAGACAGAGGGAGCGGGGACGGCCATGA
CGGGGGCAATGCTCCCCGTTGTCTGCAGGAGTGGGAGCCACCAGAACAGT
AGTTGGGTCGACCACAGTGAGGACGGTCGAAGTCACGCCAAGGCCACGTC
TCCGCAACGCCTGGAGGTATCGGTACAGGGAGAGGACAATGGTAGAGAAG
ACGGCCTGCACGAGAGGGAAAGCATGGGGGCTTCTACTCAGAGTAACAGC
CGCACCTCAGCTTCCCTCCCCTTGCCTGCTTCCATCTCTTCCTTCGCATC
CCGTCGCTTGGCCACCCGGCAAGCGCAGGCCCGGCTCATCCGTGCAGTGG
AGGTGTTTCTGACCTGCATGGTTGGCGCGCTTATCCCCAATTTGGGCGTC
TTCACGTCGCTCGTCGGCGCCACTTTTGTGACGATCATTGGCTTCATTTT
TCCGGCTGCGATGTGGCTGGAATTGCAAAGAGAGGACACGCACGCCTCCT
TTTGGGCCAAAGCGAGGGTTTATGGAATAGCAGGGCTGGTCATCGCCGCG
GGGTTAGCGGCCATGGTGGTTGGGACGGTCGAGGGTCTCAGGAACTTGTC
TTCCTGAGCAATGAGGGGGAAGGGAGAGTAGTGGCCACCGAAAGCATGTT
GACATATTAAATAGCGCAAATTCCTGAAAATATCAGA

Coding sequence (CDS) from alignment at CM002459.1:436592..438978-

>rna2460 ID=rna2460|Name=rna2460|organism=Nannochloropsis gaditana|type=CDS|length=1500bp|location=Sequence derived from alignment at CM002459.1:436592..438978- (Nannochloropsis gaditana)
ATGCAAGGTGAGCATCAGTCCATGCACCCACGCGCTAATTACTGGATTTG
TCTCCGTCGTTCCGCCGTCCTGTCGATCAGTATCATCTCCTCGGACCAAC
ATCTCTCCCCACTCTCCCCTCACTCTATTCACTCGCCCCTTGGATTCCCT
CAGGACTTGCTTCGAGAGGAGCAGGGCATAGTCGTTGAGAACTATGAGGA
GCTGGCCGGCGCGGTCTTCGGACCTCGGGCCTTCCGCTTCTGCCAGACCC
TGATGGCCACTCTGACCCTCATCTACACCTCCGGCTTCGTCATCGTCATC
AGCAGCAGCCTCTACGACGTGATGCCAGCCGTCCCCCGGGCCATGTGGTG
CGCCATCGTCTTCCCCATCCTCACCCTGCTCTCCTGGGTCCCGTTCATGG
AAGACCTCTGGTTCGTGTCCCTGCTGGGTCTGGGCACCTACCTCTTCGGC
GTGGTGGGCTCCACCCTCTTCGTGGCGGCCAGAGACTTCGACCCCCCGCC
CGCCCCCATGGCCTGGCACTGGGAGGGTGCCGCGCATTTCTACGGCGTCG
CTGTCTACTCCCTGGAAGGTATCAACCTGACGTTGCCGGTGTCCGCGTCT
ATGAAAAGCTTGCGGAAGCCTCCCTTGGTCATGACCGTGGGGGTCTGTCT
CTTTGCAGGCATCACCGCCTTCTATGCGTCCTTCGCCTACGCCGCGGGGC
TTGGGAGCTGTGACATCATCATCCAGTGCCTGGGCCCGGGCCCCTTCGTG
AACGTCATCAGGGTCGCCTTGGCGCTCTCGCTTTTGGCCACGCACCCGGT
CTACCTAATCGTAGCGTCGGAGATTTTTGAGAGGGCTCTCCTCGGAGATC
CCTCCGTGCCGGTCCCAGAGGCCTTGGACGGGGCCCAGGAGACGGAGGAG
GCGGGGCTGGAGGACGAGACAGAGGGAGCGGGGACGGCCATGACGGGGGC
AATGCTCCCCGTTGTCTGCAGGAGTGGGAGCCACCAGAACAGTAGTTGGG
TCGACCACAGTGAGGACGGTCGAAGTCACGCCAAGGCCACGTCTCCGCAA
CGCCTGGAGGTATCGGTACAGGGAGAGGACAATGGTAGAGAAGACGGCCT
GCACGAGAGGGAAAGCATGGGGGCTTCTACTCAGAGTAACAGCCGCACCT
CAGCTTCCCTCCCCTTGCCTGCTTCCATCTCTTCCTTCGCATCCCGTCGC
TTGGCCACCCGGCAAGCGCAGGCCCGGCTCATCCGTGCAGTGGAGGTGTT
TCTGACCTGCATGGTTGGCGCGCTTATCCCCAATTTGGGCGTCTTCACGT
CGCTCGTCGGCGCCACTTTTGTGACGATCATTGGCTTCATTTTTCCGGCT
GCGATGTGGCTGGAATTGCAAAGAGAGGACACGCACGCCTCCTTTTGGGC
CAAAGCGAGGGTTTATGGAATAGCAGGGCTGGTCATCGCCGCGGGGTTAG
CGGCCATGGTGGTTGGGACGGTCGAGGGTCTCAGGAACTTGTCTTCCTGA

Synonyms

Publications