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Properties
| Property Name | Value |
|---|
| Product | pseudouridine synthase |
| Orig transcript id | gnl|cribi|Naga_100004g85.9129.mrna |
| Orig protein id | gnl|cribi|Naga_100004g85.9129 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002459.1 | supercontig | CM002459.1:409220..410619 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2449 ID=rna2449|Name=rna2449|organism=Nannochloropsis gaditana|type=mRNA|length=1664bp
GGTGGCCAATAAGTTGCGGGCGCCGCCTCACATCCATCATTTAAATCAAT
TCAATGTTTCGCCAGTTGTAGTGTTGTGAGACCTCGCGCGTGCAGGCACA
GGTGGTGTCCTAAGAAGGCTTCGCGGCAACCCCTCCTCGTCGGGAGTAAC
GGACACGAGCCCTCTGCTTCCAGCGTACCCATCCCGCGCTGTCCACGACG
CAGTAATGTTTTAAGCCGGCACCACTCTCCAATTGTGCTTTTCACTGCCT
TTCATGGGTTCACATCGTCCAGAAACCACGTGGGACTCGGTGAACTTGAT
CGGCAGGAGCCACCGGAATGGTCGATAATACTCAGTAGCTGACGAGCGAA
GCAACGAATTCCACAAGAAGGATCGACTCAAGCTGTAAACATTTTTTTCC
CCACGCATGCACACAGGGACGACAGCGCGGGCCGATACAGGGCAGTTTAC
GAGCTCCGAGCCGTCAAGTCGGGCCCAATCACATAAGGAGCAGGAACGGG
AGCTGCAGCCATGTTCCTCCTTGACTGGGTGTATAGTGCGCTCGCCTCAT
TAGGCCTTTATCACAAGAGCGCCAAGATTTTGTTCTTGGGCTTGGACAAT
GCCGGGAAGACGACGTTGCTGCACATGCTTAAAGAAAACAGGGTTCAAGT
CCATCAGCCCACTATTCACCCGAACACGGACGAGCTCATTATTGGTAAAA
TTCGATTTAAGACGTTTGACTTGGGCGGACACGAGACGGCGCGCCGGCTA
TGGAAGGACTACCTTACCACCGTGGATGGTGTGGTGTTTATAGTAGACGC
TTTGGACCAGGAGCGTTTCCCCGAGGCCAAGCGTGAGCTAGATAGCCTCC
TCACGAGCGACGAGCTCGCTCACGTCCCTTTCTTGGTGCTCGGAAACAAG
ATCGACGTCCCTCGCGCCGTCTCAGAGGAGCAGCTTCGATATGCGCTTGG
CATGCAGAATACGTACGGAAAAGATTCTTCAGGCGGGGAGAAGCAGCCGG
GCGTACGGCCTATCGAGCTGTACATGTGCTCTGTGATCAAGCGGATGGGG
TACGCGGACGGCTTCAAGTGGCTGGCGCAGTTCCTGTAAATTTATGGGCA
TAAGGGACGGCAGGTGGGCAGGCGTGGCAAATGATAGGGAGAGGATTCAG
TGGGCGACTCGCTGTCGGTCGGTCGAGGCGAACGGACGGAGCAAGTGGGG
GCCGGAGCCGGTTTGGAGTGCTTGGAAAGTGGGGGGGAGAAGATAGGGTG
GAGAGCAGGTCGCAGAGGACGAGCGGCGGGGAATGAGACCCTTGCAAGGT
CTTCAGGCGTGCACACTGACCGCCCTGTCTCCAGTGGGATGTTTGGTGGA
GGCGCACAACCCGTCGCGCGGGTATGTATGGAACCTTGGTCCTCTGCCGT
ACTTCCAGTCGCTCTCTTTTCCTGTCAGGGCAGGAGTTTTGTCTTATCGA
GAGGTGGGAACAGGAAGGGAGGGGTTGGCTTGATAGTGGAGGGATATTGG
GGCACGTTGTTAGGCGAGGCAGGCTGAGTGCAGAAGGGGGAAGAGGAGGG
GAGGCCGAAGGGACAGGGTGAGATGTAAGACAGGACAAGGCAGGCCTGGA
TTGAAGATAACGCCGAAACAACAAGATGAAATGGAGAGCAGCGGGAGTTA
CTCGCTGGTGTGTT back to topprotein sequence of rna2449 >rna2449-protein ID=rna2449-protein|Name=rna2449|organism=Nannochloropsis gaditana|type=polypeptide|length=439bp
MRYLRQFLALSAFLFLKEADVCSKAKMKTRLAARRSSPLRHIRLIFPILL
IFDLQIADTVSGFVLLKPPPQSHSSYLRPSTSSKVPPRQPCVAQAIRSIN
LRGIAIFSLGLNSYIVPGPDNSQDLREFDIPQTVTEPLPLPQAVYVFGGY
TSKSKARKLIRKGQVLVNDEPGKTCEAIVEKGDRIKVVAQETNGKQKGGA
GRGVKKVVVVWEDDDLAVIVKPAGVAVHGTGAYSLVDEYSKFLQPTSRSL
EDGALPKPVHAHRLDAPVGGLLLVAKTKPALQGLVTAFLERRVQKTYRAV
VIGRPAEPAGQVLAPVEGKDAVTRYKVVASVPSPAFGALTSIELNPETGR
KHQLRQHCQALGTPILGDLRYGPSNTLRTRGLFLYSMAVSFVHPVTTTAE
TFRIEVPEIFGNTMNMERKKAERMAEEEEGGSTEEGEGA back to topmRNA from alignment at CM002459.1:409220..410619+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2449 ID=rna2449|Name=rna2449|organism=Nannochloropsis gaditana|type=mRNA|length=1400bp|location=Sequence derived from alignment at CM002459.1:409220..410619+ (Nannochloropsis gaditana)
ATGCGCTATTTGCGACAATTTCTTGCGTTATCCGCATTCCTTTTTCTAAA
AGAGTAGGTCTTTGTACTCTTGAGTCGATTCCTTTTTTCTGATTGCTTTA
CATTCTTTATCACTTTTTACTTCCTCTTTCTAGAGCAGACGTTTGTTCCA
AGGCCAAGATGAAGACAAGATTAGCGGCGCGGCGGTCGTCACCTCTAAGA
CACATACGCCTGATATTTCCTATCCTACTTATTTTCGACCTGCAGATTGC
GGATACTGTTAGCGGGTTTGTTCTTTtaaagccccccccccaatcaCATT
CTAGCTACCTGCGGCCCTCAACCTCTTCAAAGGTTCCACCGCGTCAACCG
TGTGTTGCGCAAGCCATACGCTCCATCAATCTTCGTGGTATCGCAATATT
CTCATTAGGTCTTAATTCTTACATTGTCCCGGGCCCTGACAACTCTCAAG
ACCTGCGGGAATTCGATATTCCCCAGACGGTGACGgagcctctccccctt
ccacaaGCTGTCTACGTCTTTGGTGGCTACACCAGCAAGTCCAAGGCACG
TAAACTCATCCGCAAGGGACAGGTTCTTGTCAATGACGAGCCTGGAAAAA
CTTGTGAGGCTATCGTGGAAAAAGGTGATAGAATTAAAGTCGTAGCTCAG
GAGACAAATGGTAAGcagaagggcggggccgggcgaGGGGTAAAAAAGGT
GGTTGTTGTttgggaggacgacgatcTGGCTGTGATAGTCAAACCAGCTG
GCGTCGCTGTTCATGGAACGGGAGCATACTCGTTGGTGGACGAATACAGC
AAGTTTTTGCAGCCAACAAGCCGCAGCCTTGAAGACGGGGCTCTGCCCAA
GCCCGTGCACGCCCACCGCCTGGACGCGCCCGTGGGcggcctgctcctcg
tcgccAAGACCAAGCCCGCCTTGCAGGGGCTCGTGACCGCCTTTCTGGAG
CGGCGCGTCCAGAAGACGTACCGCGCTGTTGTGATAGGGCGGCCGGCAGA
ACCCGCCGGCCAGGTCCTTGCGcccgtggaggggaaggacgcggtCACCC
GGTATAAGGTGGTGGCGTCGGTCCCCTCGCCCGCTTTTGGCGCGCTCACG
TCCATAGAATTGAATCCTGAGACAGGGCGAAAGCATCAATTGCGGCAGCA
CTGCCAGGCCTTAGGCACCCCAATCCTAGGCGATCTGAGGTACGGGCCGT
CCAATACCTTGCGGACGCGTGGCTTGTTCCTCTATTCCATGGCCGTGAGC
TTCGTGCACCCGGTGACGACGACAGCGGAGACCTTCAGGATAGAGGTGCC
TGAGATTTTCGGGAACACCATGAAtatggagaggaagaaggcggagcgga
tggctgaggaggaggagggtggaagcacggaggaaggggagggtgccTAA
back to topCoding sequence (CDS) from alignment at CM002459.1:409220..410619+ >rna2449 ID=rna2449|Name=rna2449|organism=Nannochloropsis gaditana|type=CDS|length=2640bp|location=Sequence derived from alignment at CM002459.1:409220..410619+ (Nannochloropsis gaditana)
ATGCGCTATTTGCGACAATTTCTTGCGTTATCCGCATTCCTTTTTCTAAA
AGAAGCAGACGTTTGTTCCAAGGCCAAGATGAAGACAAGATTAGCGGCGC
GGCGGTCGTCACCTCTAAGACACATACGCCTGATATTTCCTATCCTACTT
ATTTTCGACCTGCAGATTGCGGATACTGTTAGCGGGTTTGTTCTTTtaaa
gccccccccccaatcaCATTCTAGCTACCTGCGGCCCTCAACCTCTTCAA
AGGTTCCACCGCGTCAACCGTGTGTTGCGCAAGCCATACGCTCCATCAAT
CTTCGTGGTATCGCAATATTCTCATTAGGTCTTAATTCTTACATTGTCCC
GGGCCCTGACAACTCTCAAGACCTGCGGGAATTCGATATTCCCCAGACGG
TGACGgagcctctcccccttccacaaGCTGTCTACGTCTTTGGTGGCTAC
ACCAGCAAGTCCAAGGCACGTAAACTCATCCGCAAGGGACAGGTTCTTGT
CAATGACGAGCCTGGAAAAACTTGTGAGGCTATCGTGGAAAAAGGTGATA
GAATTAAAGTCGTAGCTCAGGAGACAAATGGTAAGcagaagggcggggcc
gggcgaGGGGTAAAAAAGGTGGTTGTTGTttgggaggacgacgatcTGGC
TGTGATAGTCAAACCAGCTGGCGTCGCTGTTCATGGAACGGGAGCATACT
CGTTGGTGGACGAATACAGCAAGTTTTTGCAGCCAACAAGCCGCAGCCTT
GAAGACGGGGCTCTGCCCAAGCCCGTGCACGCCCACCGCCTGGACGCGCC
CGTGGGcggcctgctcctcgtcgccAAGACCAAGCCCGCCTTGCAGGGGC
TCGTGACCGCCTTTCTGGAGCGGCGCGTCCAGAAGACGTACCGCGCTGTT
GTGATAGGGCGGCCGGCAGAACCCGCCGGCCAGGTCCTTGCGcccgtgga
ggggaaggacgcggtCACCCGGTATAAGGTGGTGGCGTCGGTCCCCTCGC
CCGCTTTTGGCGCGCTCACGTCCATAGAATTGAATCCTGAGACAGGGCGA
AAGCATCAATTGCGGCAGCACTGCCAGGCCTTAGGCACCCCAATCCTAGG
CGATCTGAGGTACGGGCCGTCCAATACCTTGCGGACGCGTGGCTTGTTCC
TCTATTCCATGGCCGTGAGCTTCGTGCACCCGGTGACGACGACAGCGGAG
ACCTTCAGGATAGAGGTGCCTGAGATTTTCGGGAACACCATGAAtatgga
gaggaagaaggcggagcggatggctgaggaggaggagggtggaagcacgg
aggaaggggagggtgccTAAATGCGCTATTTGCGACAATTTCTTGCGTTA
TCCGCATTCCTTTTTCTAAAAGAAGCAGACGTTTGTTCCAAGGCCAAGAT
GAAGACAAGATTAGCGGCGCGGCGGTCGTCACCTCTAAGACACATACGCC
TGATATTTCCTATCCTACTTATTTTCGACCTGCAGATTGCGGATACTGTT
AGCGGGTTTGTTCTTTtaaagccccccccccaatcaCATTCTAGCTACCT
GCGGCCCTCAACCTCTTCAAAGGTTCCACCGCGTCAACCGTGTGTTGCGC
AAGCCATACGCTCCATCAATCTTCGTGGTATCGCAATATTCTCATTAGGT
CTTAATTCTTACATTGTCCCGGGCCCTGACAACTCTCAAGACCTGCGGGA
ATTCGATATTCCCCAGACGGTGACGgagcctctcccccttccacaaGCTG
TCTACGTCTTTGGTGGCTACACCAGCAAGTCCAAGGCACGTAAACTCATC
CGCAAGGGACAGGTTCTTGTCAATGACGAGCCTGGAAAAACTTGTGAGGC
TATCGTGGAAAAAGGTGATAGAATTAAAGTCGTAGCTCAGGAGACAAATG
GTAAGcagaagggcggggccgggcgaGGGGTAAAAAAGGTGGTTGTTGTt
tgggaggacgacgatcTGGCTGTGATAGTCAAACCAGCTGGCGTCGCTGT
TCATGGAACGGGAGCATACTCGTTGGTGGACGAATACAGCAAGTTTTTGC
AGCCAACAAGCCGCAGCCTTGAAGACGGGGCTCTGCCCAAGCCCGTGCAC
GCCCACCGCCTGGACGCGCCCGTGGGcggcctgctcctcgtcgccAAGAC
CAAGCCCGCCTTGCAGGGGCTCGTGACCGCCTTTCTGGAGCGGCGCGTCC
AGAAGACGTACCGCGCTGTTGTGATAGGGCGGCCGGCAGAACCCGCCGGC
CAGGTCCTTGCGcccgtggaggggaaggacgcggtCACCCGGTATAAGGT
GGTGGCGTCGGTCCCCTCGCCCGCTTTTGGCGCGCTCACGTCCATAGAAT
TGAATCCTGAGACAGGGCGAAAGCATCAATTGCGGCAGCACTGCCAGGCC
TTAGGCACCCCAATCCTAGGCGATCTGAGGTACGGGCCGTCCAATACCTT
GCGGACGCGTGGCTTGTTCCTCTATTCCATGGCCGTGAGCTTCGTGCACC
CGGTGACGACGACAGCGGAGACCTTCAGGATAGAGGTGCCTGAGATTTTC
GGGAACACCATGAAtatggagaggaagaaggcggagcggatggctgagga
ggaggagggtggaagcacggaggaaggggagggtgccTAA back to top
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