rna2446, rna2446 (mRNA) Nannochloropsis gaditana

Overview
Namerna2446
Unique Namerna2446
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1123
Alignment locationCM002459.1:401490..403350 -

Link to JBrowse

Properties
Property NameValue
Productsodium bile acid symporter family protein
Orig transcript idgnl|cribi|Naga_100004g81.9187.mrna
Orig protein idgnl|cribi|Naga_100004g81.9187
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:401490..403350 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g81gene2339Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2446rna2446-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28256.1cds2438Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2446 ID=rna2446|Name=rna2446|organism=Nannochloropsis gaditana|type=mRNA|length=1123bp
CCCACCCTTCGCTTTCTGGCCACTTTGCGCCCCGTCCCTGTCCTTTTTTG
CGGCAAGCTAAAGCCTCAAGGTAGCCTAATGCCACCTCTCATGCCACAGG
GAAGCCAGGTAGGGCAGGCGTGGGCTGTCGGAGGGCGTGAGAGTGATGGA
TCCCACGCAGTGTGAGGAGGAGCAGGCCTTGGAGGCGGAGTCGCTGGAGT
GCATCCTAATGGACGACCTTGAGGTCCTCTCTGCATCTGTTCCCAGGCAG
TATCGAGTCCGAGTGGTCCCGTACGTGAATGGGGAAGGGGAAAACTACGT
GGCTGTGAAAGCCACCTTCAGCATCCCCCCAGGCTACCCGGACACCAAGG
CGGACGTGAGCGTGGCTGCAGTGAAGGGCCTCTCCACCTCCCAGTGTCAA
GAATTGGAGCGTCTCATGGACCAGAAAGCTACCGAAAATGAGGGGATGGC
CATGGTCTACTTGCTGGTGGACATGATTCGAGAATGGCTGATAGAGCGCA
ACGTGGCGGGGGCCACAGACGGCTCCATGCATGCGGAGATGCTCAAGAGA
ATGCACATGAAGGAAAAGGACGAGAAACGCGCCGCAGACACCAGGGCAGG
AGAGGTTGCAAGTAGCGCATCGTTGAGCGAAGAGGATGCGCTCATGCGGC
AGAAGCGGCTGGAAGGAACGCCTGTAACCCCCGAATCCTTTCTGAAGTGG
CGGACGGCGTTCGAGGCGGAAATGGCCGCCTGTGCGGAGGCGAAGGGGGG
GGTGGGAGTGGCAGGAAAGACCGGCAAAGCAGCTGGGAATGGCGGCGCAG
TGAAACCGTCGGGGAAGGAGATGTTCCTGCGGCACCTGGCCGGGACGGCT
GAGGAGGACGAGGAGGGGGCCGAGGAGGACGAGGGGGGGAGGCTGGAGGT
GGAGTCGGAGTTGTTCGAGGAGGAGGAGGACGACAGCGATTTTGAGCTCG
AATCGGAAGACGATGAAGATGAGAGCGACTATGGGGATGATAGTGAGGAG
AGTGAGGAAAGCGACGCGGCTGCAACAAGAAAGAAAGGAAGGGAAAAGAA
GGGAGGTGACGGGTTGCGGGGGAAGAAGAGGTAGACAGCCATCACAAAGG
AAGTGAAATAAAGCATCGCTGCA
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protein sequence of rna2446

>rna2446-protein ID=rna2446-protein|Name=rna2446|organism=Nannochloropsis gaditana|type=polypeptide|length=414bp
MGPGGRSRRPWPLLLGVMLPAVFFLLPPSTYGFRSTYLPRPILRLVEAPV
IRPSVAVPPQRSCGFPVYAYTSLQPAACTHLWSTRDGEHSKRRKATILAA
AKSLYFPAYVLLAGLLGVTRPQLYAGLSEGFITRALSAVMVLMGMTLSMD
DFARIGRSKRAVVLGWCAQFSIMPGMALIMSRVFRLPPHLAAGVILVGCC
PGGTASNLVTLLAEADVALSISMTAVSTLTAGAMTPLLTSLLLGSLVPVD
TAALLRTTLQVVLLPVALGLVTNSYLLPSLPPSLTRGLTRSTPLVSGLLV
AAICGKVVATNAAAVLQSGGSLLGAVLALHSFGFFFGFWMARALGFSRQV
AKTVSIETGMQNSALAVVLARSSLPHPLSGLPGAVSAVCHSVLGSLAAWV
WSREGDRGGKGAKG
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mRNA from alignment at CM002459.1:401490..403350-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2446 ID=rna2446|Name=rna2446|organism=Nannochloropsis gaditana|type=mRNA|length=1861bp|location=Sequence derived from alignment at CM002459.1:401490..403350- (Nannochloropsis gaditana)
GATGGAAGGTGCAACGGCAATCTGCCAATTTTGTGATTGTGCATGAGAGA
ACAGGATCGGAAAGCGTGGGTATAGCCCCTCTCAATGCGGGGCGTGGAAC
GAACGAGACTTCCGGCTAGAAGCCCCTCAAGCCATGAACGCTTGAAGCAG
CGGGGGGCGGTCGAAAATAGCCTCAAGGTGCCCGGAGCTCTCATTCTTTC
CAATTACTTACTCGCTCGCTAGTCGTGTCAAGTAATCAGAGCGCTTTTCC
ACTGTTTCCTTTGTCTTTTCCAGCTGGACTCTGGCTCTGTGTGGCACCTC
CATGGGGCCTGGGGGGAGGTCACGACGGCCGTGGCCCCTCCTACTAGGAG
TGATGCTACCTGCCGTCTTTTTCCTTTTACCGCCTTCGACGTACGGTTTT
CGGTCAACTTATCTCCCGCGTCCAATTTTGAGGCTGGTGGAAGCTCCGGT
TATAAGGCCCTCCGTCGCCGTCCCTCCACAGAGAAGTTGTGGCTTCCCAG
TATACGCTTATACCTCCCTGCAGCCCGCAGCTTGCACCCATCTGTGGTCC
ACTCGAGATGGGGAGCACAGCAAGAGAAGAAAGGCCACCATCCTGGCAGC
GGCCAAGAGCTTATATTTCCCTGCGTACGTGCTGCTGGCGGGCCTTCTGG
GCGTGACGCGGCCCCAGCTGTACGCCGGCTTGAGCGAGGGTTTTATCACA
CGCGCCCTCTCGGCTGTGATGGTCCTGATGGGCATGACACTCTCCATGGA
CGATTTTGCACGCATCGGAAGAAGCAAACGAGCCGTTGTCCTGGGATGGT
GCGCCCAATTTTCAATCATGCCCGGTATGGCCTTGATAATGTCGCGCGTC
TTCAGGCTCCCCCCCCATCTGGCTGCAGGAGTCATCCTCGTTGGTGAGTT
CGACGGGGACTGAGCGAGGGGGCATTCCATCACGCACCTCTTACTCTTGC
CCATCAATCCTGACACGCTGATTGTACTGTCGCCCCCCCAGGCTGCTGTC
CCGGCGGCACTGCGTCCAACCTGGTGACCCTCTTGGCCGAGGCCGACGTG
GCTCTCAGCATTAGCATGACGGCGGTCTCCACGCTCACGGCGGGCGCGAT
GACGCCGCTACTGACCTCTCTCCTCCTGGGCTCCCTCGTCCCTGTGGACA
CCGCCGCCCTGCTCCGCACCACCCTGCAAGTCGTGCTCCTCCCCGTCGCC
CTCGGACTCGTCACCAACTCCTACTTGCTTCCCTCCCTCCCCCCCTCTCT
GACCCGAGGCCTCACTCGCTCCACCCCACTAGTTTCAGGCCTGCTGGTGG
CAGCGATCTGCGGCAAGGTCGTGGCCACCAACGCCGCAGCCGTGCTCCAG
TCCGGCGGGTCCCTCCTCGGGGCCGTGCTCGCCCTCCATTCCTTCGGTTT
CTTTTTCGGTTTTTGGATGGCCCGGGCCCTGGGCTTCTCCAGGCAGGTGG
CCAAGACCGTCTCCATCGAGACCGGCATGCAGAACAGCGCCTTGGCGGTC
GTCCTCGCCCGCAGCAGCTTGCCGCACCCGCTGTCGGGCCTACCGGGCGC
CGTCTCCGCCGTCTGCCACTCCGTGCTCGGAAGCCTGGCGGCGTGGGTCT
GGAGCCGCGAGGGGGATCGGGGGGGGAAGGGGGCCAAGGGATGAAGGGGG
AAAAACAGGCGCCTGGCCTTGTACAGGGTGGCGGGGGCTGCTGGGGAGGG
TGAGGGGGTGGGACCAAGGTGCCAGGGCGGTGAGAGGCCTCCAGGATGAT
CACTGTCGCCATCCTGGCCATGAAAGGAATCTTACGAACGAGACTGCGTG
CAGCGATGCTTTATTTCACTTCCTTTGTGATGGCTGTCTACCTCTTCTTC
CCCCGCAACCC
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Coding sequence (CDS) from alignment at CM002459.1:401490..403350-

>rna2446 ID=rna2446|Name=rna2446|organism=Nannochloropsis gaditana|type=CDS|length=2490bp|location=Sequence derived from alignment at CM002459.1:401490..403350- (Nannochloropsis gaditana)
GCTGCTGTCCCGGCGGCACTGCGTCCAACCTGGTGACCCTCTTGGCCGAG
GCCGACGTGGCTCTCAGCATTAGCATGACGGCGGTCTCCACGCTCACGGC
GGGCGCGATGACGCCGCTACTGACCTCTCTCCTCCTGGGCTCCCTCGTCC
CTGTGGACACCGCCGCCCTGCTCCGCACCACCCTGCAAGTCGTGCTCCTC
CCCGTCGCCCTCGGACTCGTCACCAACTCCTACTTGCTTCCCTCCCTCCC
CCCCTCTCTGACCCGAGGCCTCACTCGCTCCACCCCACTAGTTTCAGGCC
TGCTGGTGGCAGCGATCTGCGGCAAGGTCGTGGCCACCAACGCCGCAGCC
GTGCTCCAGTCCGGCGGGTCCCTCCTCGGGGCCGTGCTCGCCCTCCATTC
CTTCGGTTTCTTTTTCGGTTTTTGGATGGCCCGGGCCCTGGGCTTCTCCA
GGCAGGTGGCCAAGACCGTCTCCATCGAGACCGGCATGCAGAACAGCGCC
TTGGCGGTCGTCCTCGCCCGCAGCAGCTTGCCGCACCCGCTGTCGGGCCT
ACCGGGCGCCGTCTCCGCCGTCTGCCACTCCGTGCTCGGAAGCCTGGCGG
CGTGGGTCTGGAGCCGCGAGGGGGATCGGGGGGGGAAGGGGGCCAAGGGA
TGAATGGGGCCTGGGGGGAGGTCACGACGGCCGTGGCCCCTCCTACTAGG
AGTGATGCTACCTGCCGTCTTTTTCCTTTTACCGCCTTCGACGTACGGTT
TTCGGTCAACTTATCTCCCGCGTCCAATTTTGAGGCTGGTGGAAGCTCCG
GTTATAAGGCCCTCCGTCGCCGTCCCTCCACAGAGAAGTTGTGGCTTCCC
AGTATACGCTTATACCTCCCTGCAGCCCGCAGCTTGCACCCATCTGTGGT
CCACTCGAGATGGGGAGCACAGCAAGAGAAGAAAGGCCACCATCCTGGCA
GCGGCCAAGAGCTTATATTTCCCTGCGTACGTGCTGCTGGCGGGCCTTCT
GGGCGTGACGCGGCCCCAGCTGTACGCCGGCTTGAGCGAGGGTTTTATCA
CACGCGCCCTCTCGGCTGTGATGGTCCTGATGGGCATGACACTCTCCATG
GACGATTTTGCACGCATCGGAAGAAGCAAACGAGCCGTTGTCCTGGGATG
GTGCGCCCAATTTTCAATCATGCCCGGTATGGCCTTGATAATGTCGCGCG
TCTTCAGGCTCCCCCCCCATCTGGCTGCAGGAGTCATCCTCGTTGGCTGC
TGTCCCGGCGGCACTGCGTCCAACCTGGTGACCCTCTTGGCCGAGGCCGA
CGTGGCTCTCAGCATTAGCATGACGGCGGTCTCCACGCTCACGGCGGGCG
CGATGACGCCGCTACTGACCTCTCTCCTCCTGGGCTCCCTCGTCCCTGTG
GACACCGCCGCCCTGCTCCGCACCACCCTGCAAGTCGTGCTCCTCCCCGT
CGCCCTCGGACTCGTCACCAACTCCTACTTGCTTCCCTCCCTCCCCCCCT
CTCTGACCCGAGGCCTCACTCGCTCCACCCCACTAGTTTCAGGCCTGCTG
GTGGCAGCGATCTGCGGCAAGGTCGTGGCCACCAACGCCGCAGCCGTGCT
CCAGTCCGGCGGGTCCCTCCTCGGGGCCGTGCTCGCCCTCCATTCCTTCG
GTTTCTTTTTCGGTTTTTGGATGGCCCGGGCCCTGGGCTTCTCCAGGCAG
GTGGCCAAGACCGTCTCCATCGAGACCGGCATGCAGAACAGCGCCTTGGC
GGTCGTCCTCGCCCGCAGCAGCTTGCCGCACCCGCTGTCGGGCCTACCGG
GCGCCGTCTCCGCCGTCTGCCACTCCGTGCTCGGAAGCCTGGCGGCGTGG
GTCTGGAGCCGCGAGGGGGATCGGGGGGGGAAGGGGGCCAAGGGATGAAT
GGGGCCTGGGGGGAGGTCACGACGGCCGTGGCCCCTCCTACTAGGAGTGA
TGCTACCTGCCGTCTTTTTCCTTTTACCGCCTTCGACGTACGGTTTTCGG
TCAACTTATCTCCCGCGTCCAATTTTGAGGCTGGTGGAAGCTCCGGTTAT
AAGGCCCTCCGTCGCCGTCCCTCCACAGAGAAGTTGTGGCTTCCCAGTAT
ACGCTTATACCTCCCTGCAGCCCGCAGCTTGCACCCATCTGTGGTCCACT
CGAGATGGGGAGCACAGCAAGAGAAGAAAGGCCACCATCCTGGCAGCGGC
CAAGAGCTTATATTTCCCTGCGTACGTGCTGCTGGCGGGCCTTCTGGGCG
TGACGCGGCCCCAGCTGTACGCCGGCTTGAGCGAGGGTTTTATCACACGC
GCCCTCTCGGCTGTGATGGTCCTGATGGGCATGACACTCTCCATGGACGA
TTTTGCACGCATCGGAAGAAGCAAACGAGCCGTTGTCCTGGGATGGTGCG
CCCAATTTTCAATCATGCCCGGTATGGCCTTGATAATGTCGCGCGTCTTC
AGGCTCCCCCCCCATCTGGCTGCAGGAGTCATCCTCGTTG
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Synonyms
Publications