rna2425, rna2425 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2425
Unique Name	rna2425
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1002
Alignment location	CM002459.1:354848..359061 +

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Properties


Property Name	Value
Product	methyltransferase type 11
Orig transcript id	gnl\|cribi\|Naga_100004g58.9132.mrna
Orig protein id	gnl\|cribi\|Naga_100004g58.9132
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:354848..359061 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g58	gene2318	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2425	rna2425-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28201.1	cds2417	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:354848..359061+
coding sequence from alignment at CM002459.1:354848..359061+

mRNA sequence

>rna2425 ID=rna2425|Name=rna2425|organism=Nannochloropsis gaditana|type=mRNA|length=1002bp
ATGCATTGTCCATGGCTGCGGAGAACAGCTACTAAGCAGATCTATCTTAC
CCTCCACCGTACACGCTCGCACAGCGGAGCAAAACAGCTTTCCCCGCCCC
TCTGCGAGTTTTTCCTGCAAGTTTTAATGAGCACCATCCGACGCCAGACA
CGCTTACGGAAGGAATATCTTTACCGGAAATCTTTGGAGGGCAAGGAAAA
GGCTGCATATGAACGCAAGCAACAGATCCGCAATGCTCTACAGGAAGGCA
AACCTATTCCAACAGAGCTCCGGGGGGAAGAGGGCAATTGGCGGCACGAA
ATAAATCTTGAAGACGATATTACAGCCAGGCCTCATAATCATATCGACGA
TGAATATGGGTTAGCAGGGACGCGAGACCCGAAAGTTTGCGTAACAACAT
CGCGAGATCCGTCGTCACGGCTGAAGCAGTTCATGAAGGAGGTGAAGCTC
ATTTTTCCCAACGCCCAGGCCGTCAACCGGGGCAATACCAAAGTGCCCGA
GCTGGTGGAGGCCTGTCGTACGCATGACTTTACGGACATCGTCGTGGTGC
AAGAAACGCGTGGTCAACCCGATGGGCTGCTTGTGTGCCACTTACCCTTA
GGCCCCACAGCGTATTTTACCATCTCGAACGTGGTGATGCGCCATGACAT
TGAAGACCGCGCTGCCGTCTCAGAGGCGTACCCTCACTTGATTCTCGAGG
GCTTCGTGTCTACTCTTGGCCGACGTGTGGCGGACATCTTGAAGTTCACG
TTCCCGGCCCCCCGCCCCGCGTCCCAACGTGTGGTCACCTTCGCGAACGA
GGACGACCACATCGTCTTCCGGCACCACACCTTTGAGAAGGCGCCGGGAA
CGAAAGGAGAAGTTACTCTGAAGGAGATTGGCCCACGCTTTGATTTGACT
GTGTTTCAGGTAAAACTAGGAACGCTGGAGCAAACGGACGCAGAGACGGA
GTTCGTCTTTAGGCCCTACATGAACACGGCGAAGAAGAGGCGGCTGCTTT
GA

protein sequence of rna2425

>rna2425-protein ID=rna2425-protein|Name=rna2425|organism=Nannochloropsis gaditana|type=polypeptide|length=370bp
MHLSKVPLKQLAWLVIVFNACVQAFRPKPIVMSSSPSLEVPPISPTPTEL
RQPLSYRVADKVVGTLFSIDPIFNVLAKKARESIIARGEKIGVSWSERVE
GLKRHMEELETEYEGVHRKRVVIPEYYQKPFHAYKEGNLGWAPAIEFEAA
SLSVHAPTYTRGPTELQEDGDAKLRGNFHKRMKEMLAKFSFVPSRIVDVG
CAAGMSTFCLQASFPEAEVLGVDLSPYMLAVAKYNLNARPEFAQVKREGR
VDYVHAAGEDLGLPDASVDLVSICLVNHELPNEAARAVFREAHRVLRPGG
ALAFMDMDPTAPAFQRIVKNPMLFALFKSTEPWLKEYVVLDLPSELARAG
FSHMDVRGNSPRHRTVVAFK

mRNA from alignment at CM002459.1:354848..359061+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2425 ID=rna2425|Name=rna2425|organism=Nannochloropsis gaditana|type=mRNA|length=4214bp|location=Sequence derived from alignment at CM002459.1:354848..359061+ (Nannochloropsis gaditana)
GGCCACCTCTGCTTGAGTGCTTCCATCGCATGAACCTAATTGGGCATTCA
TCGGACTGATTCCCACTGTGGTCTCCGTTTCCATTTCACAGTAGCATTTC
CCagatcccttcctcctgcgcaACGCGAATCCGCCTTCCTTCAGCTTCCT
ACAAGCGCTGCACTTTCCGCAACAATGCATTTATCAAAAGTGCCCTTAAA
GCAACTAGCATGGCTAGTGATTGTCTTTAACGCGTGTGTGCAAGCTTTCC
GTCCCAAGCCTATCGTAATGTCGTCCAGCCCATCTTTGGAAGTACCTCCA
ATAAGCCCTACTCCCACCGAGCTCCGGCAGCCCCTCTCGTATCGCGTCGC
GGACAAGGTTGTTGGCACACTTTTTTCCATCGATCCCATATTTAATGTCC
TCGCCAAGAAAGCTCGGGAGTCGATCATTGCCCGTGGGGAAAAAATCGGG
GTCTCCTGGTCGGAGCGCGTGGAGGGACTTAAGCGACATATGGAGGAGCT
TGAAACCGAGTACGAGGGCGTGCATCGAAAGAGAGTAGTCATTCCTGAAT
ACTACCAGAAGCCTTTCCATGCATATAAAGAGGGAAATTTAGGCTGGGCG
CCAGCCATAGAGTTCGAGGCGGCTTCCCTCTCGGTCCACGCTCCTACCTA
CACTAGGGGGCCCACCGAGCTCCAGGAAGACGGGGATGCAAAGCTTCGCG
GTAATTTTCACAAGCGGATGAAAGAAATGCTTGCCAAGTTTTCCTTTGTC
CCATCTCGTATAGTCGATGTGGGCTGCGCCGCCGGCATGAGCACGTTCTG
TCTGCAGGCGTCCTTTCCAGAAGCTGAAGTGCTAGGCGTGGACCTCTCTC
CTTACATGCTGGCCGTAGCCAAGTATAACCTAAACGCGCGCCCGGAATTT
GCGCAAGTCAAGCGGGAAGGTCGCGTTGACTACGTGCATGCCGCCGGGGA
GGACTTGGGTCTGCCCGATGCCTCGGTGGACCTGGTTTCGATATGCCTGG
TCAACCACGAGTTGCCCAACGAGGCGGCTCGGGCGGTTTTCCGGGAAgcc
caccgcgtcctccgccccggaGGCGCTTTGGCTTTTATGGATATGGATCC
TACAGCGCCGGCGTTTCAACGCATTGTGAAAAACCCCATGCTGTTTGCTC
TGTTTAAGAGCACTGAGCCCTGGTTGAAGGAGTACGTGGTTTTGGACTTG
CCGAGTGAGCTAGCGAGAGCGGGTTTCAGCCATATGGATGTACGGGGCAA
CTCACCTCGCCATCGTACCGTGGTAGCGTTTAAATAGAGTGGCTGTAAAA
CCGGAAATTTTGATTCATGCGTGTTGCAATTGTGaatgaagggggaggga
ggagccgtGAAATAGGAGTCAAATGAGAAAACTTGTTACAGGATGAGATG
CATTATCAAATGAAGTGGATTAGGACAAATTTCCGCGCGCTTACAATATA
TTTTTTGGGTAATGTCTTTTCTAACAAATCACTGGGAAGCATGAAACTAA
TTAAGGCGATCATCGAAAGATGTCATGCAACAGGGCCGACACTTGTCTTC
AGGCCATGCCACGCTCATTGAGGTAGAAGGTTGCATATAGCTGCCTTTAT
GAGAGCTCCAAAGGCGCATTGCTTGAAGCTAACCAGAAGACACCTCGCGG
TATATTCGCAACAGCGGCTGCTCCACCAACCTCTCGatgccttctttctc
ctcctcgaggtAGGGAAGCGCagtgcccccccctcccagtgCCGTCCCTT
CTCCGGCATCCACCACTTGCCAGACCTTATcccgctcctcttttttcGCG
TCCATTTCACCTTCTGCCCCTTGTGGCGCACGTGCGTTTGGTCGAGCCTT
TGTGATAAGCCCGGGAACCAAGAGCAAGGACACGAGAGCCAGAATCGCGC
CGAAACCAAGCGCCGCTTGGGTAGCCTTTTCTTCGGCGAAAATTTTCACA
AAGATAGGTCCTGAGAGGGCCACCAAGACCTGAGGCACACAGGCGAAGAT
GTTGAGACTACCTAGGTAAAGGCCGCGTTTGTCGGGTGGCGCCATCTGGG
CAATCAGCGCCCACGGCACCACCAGAAAAACCGCCCAGGGCAAGGCGAAC
ATGCCGATTACAATCGCTGCGGCATAAATTTTTCGTCGAGGGACTAAGAA
TGTCAAGCCATAACAGCCGGCGAGCAGAAGCTGAGCCACTGCCAGAGTAG
GGCGTGTCTTAAAACGATGCAAGATGTTAGGCAAGGCAATGGAAACCAGG
CCGGTTAGGATTGCGAAAATTACAAAGCCCAAAGAGGCAGCCTTTATGCC
TCTTTCGTACCGAACATATGCCTCTGAACCAACCGGTGCGCCACCGTCCC
CTTGATTCACGACCTTTCCCACCCACACGGCGATGAAGAGGGTGTGGTGA
AACCAAGACCACCACGAGAAGAACTGGAAGGCGCACACTCGGGCCAAAGC
CGGAGGCATATTGAAAAGGGTGCCAAATATCTTGCGTATTAGGCCTAAGG
GGGAGCGTTCGCCTTCGGGCGCGTGCTCGCTATCCACCTGTAGAGGCTCC
TCGTGAGTGGTGAACACTGTAAGAAGCGAGGTGATCAAAAGGCAGATCGC
GCAGATGACTGCCACGATCCGGAGATCTGCGCACTGCATTCGGCACTGCG
GTGATTCGAGAAGAGGCATAAAATGCGTCCACGGAACCGCGCATATGACG
AAGCCTATGACGTTGCCGATGGAGGACCACACAGCAATCAGGGCGTTCCC
GAGGCGCTGTTGCTCGGAAGGGGCGATGTCAGCAATCAGTGCTCGACACG
GGCCTGCTAAGCCGTTGTTTGCCATGTCAATAATCCATAACCCGATAATG
GCTGCAGCCATGGCACCTCCACGCTGCGACGCTGAATCGGGAAGTAATGC
CCCCAGATACGTGGCATTCCCTATGAGCATGAATCCCAACACAATTAAAA
GGACACTTCCAAATATGAAAGGACGTCGACGACCGAAACGAGAGTGGCAG
TGATCTGAAACCACGCCCATATATGGTTGTGCGATCAATCCGGAAATGGG
GCCGCAGAGACAAACGACTGAATAATACTTGTACGGCACCCCAATCACCA
GCAAGTACGGCATCAGCAAAGCCGCCTGGACAGCCCAATCTACTTGTACA
CCAAGATTTACAACCGTGGCAATTAAAAGCTTGCCAAGGGACTGGCGCTG
GGGTGGAGCCATtgccgcaggaggaggggtacTTTGCGGattggtcgagg
aggaagtgttTTCTAATGCTGTCGTTGAAGCAGGAGGGGCTTGTGCGACC
GTCGCCGCCACAGCTTCCAACTCAATTGTGACTGGATTATTTtggtcccc
cctcctgcttttTCCTGCGCTCGGTTCTTCCTTAATCATTTTATGCGTTT
CATCGTCTACCTGAATGTTTGGGGTTGCATTAGGTACAGGGTTAGGGGTA
CCATGGACAATGCCAAAAATGTGGCAGCATCATGTGGTATGAGGGCGAAA
AAATACCATCTTATGACATGCGGGAAGGTTCCCGTTCATCGTGCGCGACT
TCCGGTGATCGCGTACATGTCCGATTCAGGCAGCAGCCCAGGAGGTTTTG
TTTCCCACGGAAGCAACATGGGCCATGGGccggagaaagaaaggccGCTG
CTTGTAATGTCAAAATTTTGGTTTTCTTCTCATGGGATACGAAGCACAAA
GCTAGAAGATAGGAATAGCAAGACTAATGGATAAGCTAAGATATCGGTCG
GCGTGTAGTATTGTGCCCACCTTCCTATGGGACAACTGAATGCTTGCGGT
CTCGTGGTGACGTAGTGAGTCAAATGATCAGAGATTTCGCCTTAATCGCG
CATTCTTCGAAAGCTCTCATGAACTCCATTCAGAATCTTGATGGTAAATA
AACCTAGTACTGACTATGCACAAGGGGATGCCCTGTTGAAAGATTGGAGT
GTGCACACAGTGACAGGCGGTGCGATTTTTAACCAAATAAATTTAATACT
GTTcagcaaggggaaggcgaggtcaAACGATAATTGGCAAAGTATCGCTC
GTAAATCAATTGCATAGTACTTTTTATCAGCAATATTTCCGGTATTTTTA
CGTGgccactcccttcctcttgaccgTAGTATGCTACCACAAtatccacc
tcctctttgggAAGAACCGCATAAATAAGAGGGTGCCCATGAAAATGGAA
AGTATGATAGCAAT

Coding sequence (CDS) from alignment at CM002459.1:354848..359061+

>rna2425 ID=rna2425|Name=rna2425|organism=Nannochloropsis gaditana|type=CDS|length=1113bp|location=Sequence derived from alignment at CM002459.1:354848..359061+ (Nannochloropsis gaditana)
ATGCATTTATCAAAAGTGCCCTTAAAGCAACTAGCATGGCTAGTGATTGT
CTTTAACGCGTGTGTGCAAGCTTTCCGTCCCAAGCCTATCGTAATGTCGT
CCAGCCCATCTTTGGAAGTACCTCCAATAAGCCCTACTCCCACCGAGCTC
CGGCAGCCCCTCTCGTATCGCGTCGCGGACAAGGTTGTTGGCACACTTTT
TTCCATCGATCCCATATTTAATGTCCTCGCCAAGAAAGCTCGGGAGTCGA
TCATTGCCCGTGGGGAAAAAATCGGGGTCTCCTGGTCGGAGCGCGTGGAG
GGACTTAAGCGACATATGGAGGAGCTTGAAACCGAGTACGAGGGCGTGCA
TCGAAAGAGAGTAGTCATTCCTGAATACTACCAGAAGCCTTTCCATGCAT
ATAAAGAGGGAAATTTAGGCTGGGCGCCAGCCATAGAGTTCGAGGCGGCT
TCCCTCTCGGTCCACGCTCCTACCTACACTAGGGGGCCCACCGAGCTCCA
GGAAGACGGGGATGCAAAGCTTCGCGGTAATTTTCACAAGCGGATGAAAG
AAATGCTTGCCAAGTTTTCCTTTGTCCCATCTCGTATAGTCGATGTGGGC
TGCGCCGCCGGCATGAGCACGTTCTGTCTGCAGGCGTCCTTTCCAGAAGC
TGAAGTGCTAGGCGTGGACCTCTCTCCTTACATGCTGGCCGTAGCCAAGT
ATAACCTAAACGCGCGCCCGGAATTTGCGCAAGTCAAGCGGGAAGGTCGC
GTTGACTACGTGCATGCCGCCGGGGAGGACTTGGGTCTGCCCGATGCCTC
GGTGGACCTGGTTTCGATATGCCTGGTCAACCACGAGTTGCCCAACGAGG
CGGCTCGGGCGGTTTTCCGGGAAgcccaccgcgtcctccgccccggaGGC
GCTTTGGCTTTTATGGATATGGATCCTACAGCGCCGGCGTTTCAACGCAT
TGTGAAAAACCCCATGCTGTTTGCTCTGTTTAAGAGCACTGAGCCCTGGT
TGAAGGAGTACGTGGTTTTGGACTTGCCGAGTGAGCTAGCGAGAGCGGGT
TTCAGCCATATGGATGTACGGGGCAACTCACCTCGCCATCGTACCGTGGT
AGCGTTTAAATAG

Synonyms

Publications