rna2423, rna2423 (mRNA) Nannochloropsis gaditana

Overview
Namerna2423
Unique Namerna2423
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length222
Alignment locationCM002459.1:351912..353701 +

Link to JBrowse

Properties
Property NameValue
Productglutamine cyclotransferase
Orig transcript idgnl|cribi|Naga_100004g56.9080.mrna
Orig protein idgnl|cribi|Naga_100004g56.9080
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:351912..353701 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g56gene2316Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2423rna2423-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28149.1cds2415Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2423 ID=rna2423|Name=rna2423|organism=Nannochloropsis gaditana|type=mRNA|length=222bp
ATGTTTCTCATTGGTATGATCGTCACGACTCCATTGGTTAGGTGGCCGTT
AACTTCCAGTGACTTGACCATCAGGAGCTTTTTGTCGCAGACGAGACCCG
CAACAAGCTTTTACTCGACCCTCTGTTTGTTTATACGAGATCATTCATTG
AGAAAGATGGAAAAAAGGTTTGAGAGTGAGGTACACTACGTGTACATTGG
CGGTACTATGTTAAACATTTGA
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protein sequence of rna2423

>rna2423-protein ID=rna2423-protein|Name=rna2423|organism=Nannochloropsis gaditana|type=polypeptide|length=301bp
MPGYLRKWAGTLLVVAPTLTMAFAAGNPPSSSAHSGNSANNKCETSMPGP
AGLKMHRGLQTRTSYVIVEEFAHDPSAFTQGLVYEEDGTFLEGTGLYGKS
KLRRVDASTGEVLVSHDLSADSFGEGIVAVDDKIIQLTWKERKALVYGRQ
NLTLLNDFKYETVTGEGWGITTDGARLIVSDGSANLFFWDKDTYKEIPES
RLLVQDGHGNAVKHLNELEWAHGYVWANVWLTDDIVQIDPASGKVVAFHD
FSALFPHHLRVSLDQVLNGIAFDAENDIFYLTGKWFPKYFKVKICLPEAA
V
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mRNA from alignment at CM002459.1:351912..353701+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2423 ID=rna2423|Name=rna2423|organism=Nannochloropsis gaditana|type=mRNA|length=1790bp|location=Sequence derived from alignment at CM002459.1:351912..353701+ (Nannochloropsis gaditana)
CGAGTAAAAGCTTGTTGCGGGTCTCGTCTGCGACAAAAAGCTCCTGATGG
TCAAGTCACTGGAAGTTAACGGCCACCTAACCAATGGAGTCGTGACGATC
ATACCAATGAGAAACATAAATTTCCGTCAGCCCCTTGTCGCAAACTTGCT
GATCCCAAAAAAAGGTCAACGGGAGTTATCTTGACCTTTTTGCTTTCGCG
TGTCTGAATCCGGCCCCGACCGTTGCGTCGGCCGTCTCGGAGACGCGGTC
TGGAAAGCCCGGAAATACTAAATCTAGGCACGCACGACCCACCACATTCA
GAACAGGTCATCTTTTCATTGTAGTCTGCATGTTGTGGGATGTGGTCTGA
ATCCATATGTTGGATGGGTGGTTTGAACTGTTCACCAGATGACCGAGCAG
TTTCGCTTTCAGTCGCGCTTGCATAGCAAACCGTAGGCTTATTCTCATAC
CATTGCCCGCAAAAGAACAGCAGTGGCGGCACCAGGCTCTATCCATAGAG
CAAGCAAGCTTTCCACCTTCACACACTGTCGACCGTCCCTGCGCGCGATG
CCCGGCTACCTCAGGAAATGGGCAGGGACGCTGCTCGTAGTAGCACCGAC
GCTTACCATGGCCTTCGCAGCGGGCAATCCTCCATCTTCGTCCGCACACA
GTGGTAACAGCGCTAATAACAAGTGTGAAACGAGCATGCCTGGGCCCGCC
GGTTTGAAAATGCACAGGGGCTTGCAAACACGGACTAGCTATGTCATCGT
TGAAGAATTTGCTCATGATCCAAGTGCTTTTACGCAAGGCCTGGtgtacg
aggaggatggcacTTTCCTGGAAGGAACAGGGCTGTACGGTAAATCGAAA
CTACGACGAGTGGATGCGAGCACGGGCGAGGTGCTGGTCTCACACGACCT
CAGTGCAGATAGCTTCGGAGAGGGTATCGTGGCTGTTGATGACAAGATAA
TCCAGCTCACATGGAAAGAGCGGAAAGCCTTGGTCTACGGCCGACAGAAC
CTGACACTGCTGAACGATTTCAAGTACGAGACGGTCACtggagaagggtg
ggggaTTACGACGGATGGGGCACGTTTGATCGTCAGCGACGGCTCTGCCA
ATTTGTTCTTTTGGGACAAGGACACTTACAAGGAAATTCCTGAAtcgcgc
ctcctcgtccaagacgGCCACGGCAACGCCGTAAAGCATCTGAACGAGCT
GGAGTGGGCGCATGGATATGTGTGGGCGAACGTGTGGCTGACGGACGACA
TCGTGCAAATCGACCCCGCCTCTGGGAAGGTGGTAGCCTTTCACGACTtc
tctgccctctttcctcaccACCTTCGGGTCAGTTTAGATCAAGTCCTCAA
CGGCATCGCCTTTGATGCGGAAAATGACATCTTCTACCTGACGGGGAAGT
GGTTTCCCAAGTATTTTAAGGTAAAGATATGCTTACCTGAGGCGGCGGTG
TGAGGGTCGAGTAACGCCCCCGCCCTGACTAAAGAAGGCAATtcgaaagg
agaaggacataTCAAGCAGGAAATATTTAGACGAGGAACGACAAAGCATT
TGTAGAGTATTGGTACAAGTGGAGGCGGCATGCACGCGCGAAAAATCTGT
TTTACCCTGAGAAACAGAGAGGAAAATGTCCAAAGAAAAACCACATCGCC
AGGCTTCGAATCACGTATTTTCCGTATTTAACATGCTTTGTATCCCGATG
TGTGTGCTGATCACCGCCCTGTGAGTCGTTTATCAAAGcagccgcctctt
cttcgccgtgTTCATGTAGGGCCTAAAGACGAACTCCGTC
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Coding sequence (CDS) from alignment at CM002459.1:351912..353701+

>rna2423 ID=rna2423|Name=rna2423|organism=Nannochloropsis gaditana|type=CDS|length=906bp|location=Sequence derived from alignment at CM002459.1:351912..353701+ (Nannochloropsis gaditana)
ATGCCCGGCTACCTCAGGAAATGGGCAGGGACGCTGCTCGTAGTAGCACC
GACGCTTACCATGGCCTTCGCAGCGGGCAATCCTCCATCTTCGTCCGCAC
ACAGTGGTAACAGCGCTAATAACAAGTGTGAAACGAGCATGCCTGGGCCC
GCCGGTTTGAAAATGCACAGGGGCTTGCAAACACGGACTAGCTATGTCAT
CGTTGAAGAATTTGCTCATGATCCAAGTGCTTTTACGCAAGGCCTGGtgt
acgaggaggatggcacTTTCCTGGAAGGAACAGGGCTGTACGGTAAATCG
AAACTACGACGAGTGGATGCGAGCACGGGCGAGGTGCTGGTCTCACACGA
CCTCAGTGCAGATAGCTTCGGAGAGGGTATCGTGGCTGTTGATGACAAGA
TAATCCAGCTCACATGGAAAGAGCGGAAAGCCTTGGTCTACGGCCGACAG
AACCTGACACTGCTGAACGATTTCAAGTACGAGACGGTCACtggagaagg
gtgggggaTTACGACGGATGGGGCACGTTTGATCGTCAGCGACGGCTCTG
CCAATTTGTTCTTTTGGGACAAGGACACTTACAAGGAAATTCCTGAAtcg
cgcctcctcgtccaagacgGCCACGGCAACGCCGTAAAGCATCTGAACGA
GCTGGAGTGGGCGCATGGATATGTGTGGGCGAACGTGTGGCTGACGGACG
ACATCGTGCAAATCGACCCCGCCTCTGGGAAGGTGGTAGCCTTTCACGAC
TtctctgccctctttcctcaccACCTTCGGGTCAGTTTAGATCAAGTCCT
CAACGGCATCGCCTTTGATGCGGAAAATGACATCTTCTACCTGACGGGGA
AGTGGTTTCCCAAGTATTTTAAGGTAAAGATATGCTTACCTGAGGCGGCG
GTGTGA
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Synonyms
Publications