rna2422, rna2422 (mRNA) Nannochloropsis gaditana

Overview
Namerna2422
Unique Namerna2422
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length4489
Alignment locationCM002459.1:351807..352028 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g55.9232.mrna
Orig protein idgnl|cribi|Naga_100004g55.9232
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:351807..352028 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g55gene2315Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28301.1cds2414Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2422rna2422-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2422 ID=rna2422|Name=rna2422|organism=Nannochloropsis gaditana|type=mRNA|length=4489bp
CCAGGCATCGTGAAACACGACGCGAAGCGATATTACTTTTTCACAGGAGT
ATACTGTAACCCTCGAAGTTTTCAAATTACCATCCTCACCGCATTCTCAT
GCCCTAGCATTCACTTTTGCTGCAGGGGCAATCATGACTTGTGGCTTCAT
TTCGCGACAAGCCGGGCCCTAGCTAGGTGGCAATCCAGCCGACGGTCATC
CAGGGTCATCGTCCCGGCTGCAGCATGTCAAGCACAACTTTATGTACATA
CCACACATGGATAATTCGAAAGCAAAGAAGACGACGAAGAAGATCGTGCC
TTTCAGAAACGAAATTTCGCACTTGGATGGTTTGTGGTACCACACAGCTG
CATCTTGCGTACTTCCTGATCCCGCTGCTCTCCTATCTTTTCACCACAAT
TGCGGCATTTCGGCCCCCTGCTTCTCCATGGCACGGGCGATCATTTCTTA
CGCTTCCTCGCGCGGTCGCGGACAGAAACGTGCCAGCTTCATCGGGAGAG
GAGATCTGGAAAAGCAAGTACGGGACGACGTCCGCCGCCGCGTCACGTCC
CCGCTCTTCCTTCCCCCCGGCTGCCCATCATTTTTCCGCTTCACCTGACC
GACGACGCTCCGGTCGAAATGACAGGAGCAAAAAGGAATGGGAAAGGTCA
GCACCAGAAGAGTTTCTTCTGATTTTGACGCGACTACGCGCGGAGGAAAA
TTCCGGGCGAGCCCCGCTCCTGGACGAGGAGACCGAGAGAGACATAGGAC
ATGTTATCAAGCTGGTTCGGGCATTGGCAAACCGACAGTGGGAGCAAGCT
GAAGAATCTGCGGCATTGCTGTGTCGCAGTCCCCTCTTGGACACGGTGCT
GTCGCGGATGGTCGTGTATGCAGCAACGCAACGGAATGAACCTGACCTGG
CCCTGGAGATATTGGGGGGAATGCGCGAGAAGCGCATCGACGTAGACGCG
TTCATGGCTTCTCTGGTCGCCAAGGCCGCAGCAACAGACCGGCGTTGGAT
GCCTGTGGTGGAGGTGATCCGCGCTCAGCTCTCCAGCAACCCGGGGGGGG
ACCTGATCATGCCTGGGACTCCCCAGGGCCGTCGACACGGCGGTTTCACG
CAGGCCTTGGCCTCCACGATTGAACGGGGGAAATTTTACTCCTCCTCCTT
CCTTGTGGATGCTTTGTTGCAGTTCCGAATGGTGGATCTGTTCACGGCGA
AGGTTGCCCTCAAATTCTACCGCTTCAGTCGCACGCCGGCGAGGGGGCTA
CCCTGGATCACGACCGCCCGGGCCATTGGCCTGATTCCCGATGCGGACCT
GGATTTCGAGGTGGGCAGGGTCTACAAAAGCTTGGGGATGTGGCGGGAAG
CCGTTGCCTTGCTCTCGGAAATGGTGGAGCAGAAGCGAGCAGTGGAGGAC
GAGCACGTGGGGGTGGTCCTGTCGGCATGTCACCAGGCCGGCGAGTGGAA
GGAGTGCCTGGCCACCCTGAGCAAAATGCGAGAATGGGGCCTAAGTGTGG
GCCGCGTCTCCTACTTGATCGTCCTCCGCCTCTTGCTGGAGAAGCGGCGG
CTCGACCAAGTCCGCTCAGTGCTTCAGCAGATGGAGGCGCAAGGCAGTCC
GTTGGACGCCGAGACCGCCCGGCTCGCTCTCTTTACACTGGCCAAGCGCG
GCCCCGTCTACTCCAGCCTGGAATTCCTCAAGCTCATGCCGGTCTTTGGA
GTAGAGCCCGACCTGGTTTCGTACACGGCGGTGATCCGCGCCTGCGCCCG
CTTCCAGCAACCGGATCTGGCGCTGGAGGTGCTGACTTTGATGGCGAAGA
ACGGGATGGCCCCAGACGTGTTGGCATGCGCGACAGCCATGGATGCGCTT
TCGGGCGCCGCCAGGTGGGACGAGGCCTTTGCTCTTTTCGACGGTTGCCG
CTCCCAAGGCCTGCGTCCCGACATCAAGTGCTGGACGCAGGTGCTTGGCA
TGGCCACGCAGGCTGGGCGGTGGGATTTGTTCCCGGCCTACTTGGAAGCA
GCGGTGGGGGAGGCACGCGTCCACAAAACAGGCCTGGATTTACGATTTTT
TGCGACGGTGATCAACGCCTGTGCAGAGGGCAATCGTACGGATGAAGCCT
TGGCCGTGCTGGCCAGCGTGCGTTCATACGGCTTAATGCCCAACGTTGTG
TGCTTCACGGCGGCCGCCAAGGCGTGCTTGGCCCGACGTCGGTGGCGCGA
CGCCCTTGGCTTGTTGGAGGAGGCACAAAAAGAGGGAGTTCCGGCGGATG
CAACCCTATACAGGACAGTTCTGGGCTGCTGCTGGCGGGCACGGCAATGG
CAGTCGGTGCTCAAGTTGTACGGGGAGATGCTGGAGAGGGGCTTGGAGGT
AGACTCGCGCATGTACACCTCGCTGATGGACGCTCTGGCGGGGGCAGGGC
AGTCGGAGCTTGCGGCTAATGTGCTCCAGGACATGGTTGCCAATGGGATC
GCGCCTGTGGATGCCACATGGAGCGCATTTTTCCAGTCTTGGTACCATAA
GGGAGAGTATGGGACACCGTGGAAGTTGATTGAAGAGCTGGTCCGATGGG
AGGATGAAGGGGGAATGGACAGTAACGCGGCGTGGATGCCACGCAAAGTC
ATTGTAAGCGATGCAGACCAAAGGAGGCCTTCGGCCGACGGCTCAAGAGC
CGGGAGCAGACAGGGGCCCAGAGCGGGGCTTGGCACGGGTCCAGGTCCCA
GGACTCTTGCGGACTTGATGCATGTGTGCGCGCGACGGGAGGACTGGGGG
GAGGTGCTTGAATTGCAACGTCGGATAACGGACATGGGTTTGCCACCCAC
GGCTACGCGGGCGCCTCATCTCGTTGTTCGCGCTTATGCAGAGCTTGGGC
GTTGGACAGAGGCGCAGCAATTTCTATGTGATTGCATGCACCAAGGAGTT
TCTACCGAGAGTACGCAAAATTACACAAGTCATGACGAGAGGGCAAGTGA
CCAGGCAAGACAGGTACCTGCGACTGAAAACTCTCGGCCTTTTAGCGTCA
GCTGGAGCCGGACGTACGGGGCATTGCTGACGTTGTGCTCGAAGAGGATC
GAGCCGGTTCGAGCCTTGGCTTTGTTGAAGGACATGGAGGACAAACAGTT
GGCCCCGGATGCGGAGGCCTACCACGCTGTCATGGATGCCTGTGCACAAG
CAGGTATGAAAGGAGAAGTGCGCATGGTTTTTGAGAAGCTGCGGGCACGG
GCTGACCTCCTTCCTCGTGTGGAATCCTTCACAATCATGTTGGATCTCTG
CGCGCGGGAGGGAGGAAAGGGGGAGGAAGCATTGCGATTAATGGATGATT
TGGAAGGCCTAGGCTTGACCCCAGACATGCTTTGTTTCAACGCCGCCATG
GAAGCCTGCCGGGAAGCCTCCATGTTGGAGACGGATCCAGGCGAGGGTCG
ATATCGACGGGCAATGCGGAAATGGAGGGACGTGGAGGTGATGCACACGT
ACAACAGCGAAATGGCAGTCCTAGCGACGAGGAAGGGGGGACAGGATGGC
GAAGCGTCCTCGACAGCGTTGCGGTATCTCAGAGAGATGCAAGCCAACGG
CATACCCCGGGACACCGACTCCTTCAACATGGCGCTTGAGGCGTGCGCAC
GGGGGGGGAATCTCCAAGAGGCCCGAACGGTCTTTGAAGAGCTTCAAGCC
GCGGCGACCGAGGAGGCGCAAGGTCCCTCGGCCAGGCCGGACATTTTTTC
CTACATCACGTTGGCTAACGCGTTGGCGAAGGATGGTCGCGACAGCGAGG
CCATGGCGTGGCTAAATCATATGGTAGGATTGGCAGTCGATGAGGCAAAA
GCAGTAGTAGGAGCAGCCCCAAACAAGACAAAAGGAAGAACAAATGCAGG
GAGAAAGGCTATCCAACCTTCCGGAAATTCAGAACGACTGGGGATGAACA
AGTCCAGCACGAGCAGAGTTGGCACAAATATACTACTCGCCGATGAAACG
CCTGCGCTTCCTTCCCCCTCGACGCCGATAGGTGATTTAGAAGAAGCTGA
CGGCTTCACACCCTCTTCACTTCTGCACTTGTCAAGCGCCAGTATTCGGA
AAAAGACGCGCTGGCCGGCCTACTATAGGAACCTATGGCCTCAAACAGTC
AAGACGCTCAGTAAAAATATACTTGTTCTAGCTAGGTGTGCTTCTCCACG
TGAACAGGCCACCCGTTGTGCAGATATAGGAAAATTGCTAGAATTTCTGG
ACTCTCATGTGCCGATTCTGAACACCCAAGTCGTAGCGGAACAACTGGTC
GGTATGGGCATTTGTAGCACAAAACACATCAAAACACTGACAGGGAACGC
ATTGAAGATGCGTTGGAGGGAAAACCAGGTTTGAGCTAGAAAGATACATT
CATGAACAGTGTGAATAATTGCAGGGGCACCGCGACATGAGAAATAAACC
CAGTCAACAAAGGCAAAGTAAAATTGAAGAGTACCTGGCGACAAGCTTTT
CGGCATCTAAAAAGAAATATAAAATAAGTCTACTTCAAA
back to top

protein sequence of rna2422

>rna2422-protein ID=rna2422-protein|Name=rna2422|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MFLIGMIVTTPLVRWPLTSSDLTIRSFLSQTRPATSFYSTLCLFIRDHSL
RKMEKRFESEVHYVYIGGTMLNI
back to top

mRNA from alignment at CM002459.1:351807..352028-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2422 ID=rna2422|Name=rna2422|organism=Nannochloropsis gaditana|type=mRNA|length=222bp|location=Sequence derived from alignment at CM002459.1:351807..352028- (Nannochloropsis gaditana)
ATGTTTCTCATTGGTATGATCGTCACGACTCCATTGGTTAGGTGGCCGTT
AACTTCCAGTGACTTGACCATCAGGAGCTTTTTGTCGCAGACGAGACCCG
CAACAAGCTTTTACTCGACCCTCTGTTTGTTTATACGAGATCATTCATTG
AGAAAGATGGAAAAAAGGTTTGAGAGTGAGGTACACTACGTGTACATTGG
CGGTACTATGTTAAACATTTGA
back to top

Coding sequence (CDS) from alignment at CM002459.1:351807..352028-

>rna2422 ID=rna2422|Name=rna2422|organism=Nannochloropsis gaditana|type=CDS|length=222bp|location=Sequence derived from alignment at CM002459.1:351807..352028- (Nannochloropsis gaditana)
ATGTTTCTCATTGGTATGATCGTCACGACTCCATTGGTTAGGTGGCCGTT
AACTTCCAGTGACTTGACCATCAGGAGCTTTTTGTCGCAGACGAGACCCG
CAACAAGCTTTTACTCGACCCTCTGTTTGTTTATACGAGATCATTCATTG
AGAAAGATGGAAAAAAGGTTTGAGAGTGAGGTACACTACGTGTACATTGG
CGGTACTATGTTAAACATTTGA
back to top
Synonyms
Publications