rna2414, rna2414 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2414
Unique Name	rna2414
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1242
Alignment location	CM002459.1:327522..328751 +

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100004g48.9212.mrna
Orig protein id	gnl\|cribi\|Naga_100004g48.9212
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:327522..328751 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g48	gene2308	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2414	rna2414-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28281.1	cds2406	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:327522..328751+
coding sequence from alignment at CM002459.1:327522..328751+

mRNA sequence

>rna2414 ID=rna2414|Name=rna2414|organism=Nannochloropsis gaditana|type=mRNA|length=1242bp
ATGGATGTTCAAGACAATTTCCGCCCAGTACGTGAGAAAATTTATCGTTT
GGAGGATGCTCGAAAAGTTGCCGACTTCTTAAGGTCGCGTAGCAGCCATC
CGGCACCGGAAATCGCTATTGTACTTGGGAGTAGGCTGCACGCCTTTGAA
CAAGTCATCGAGGCCCCCGAAAAGATCTACTACCATGACATACAGGCAGT
CCTGCCTTCGTTTCCGACATGTTCTACTGCAATTGGCAAGGAAGGGGCCT
TTATCTTTGGGTCGGTAGATGGAATTAGTGTCCTGGTTATGCAAGGTCGA
TTTCACATGTACGAAGGGCATTCAAGTCAGGCAACGGCCTTTCCTGTTCG
TGTAATTAAAGAGCTTGGGGTGCAAACTTTAATATTGACTAATGCCGCAC
GCGGTCTCAGTCCCACCTTGGAAATTGGAGACGTGATGCTGGTGGTGGAT
CATTACAATACGGAGCGCGGCAGTGAAACGCATCCGCTAGCCGGCATCAA
CGTGGAACACTGGGGTCCTCGCTTCTTGCGGTGCGACAACCTGTACGACT
ACAATCTCCGGCGGATGACCCGACAGATTGCAAAGGAAAAACGCATTACA
CTCAAGCAGGGAGGGTACATCTTTGTGTCGGGCCCCTCGTACGAGACCCC
CATGGAGGAGGACGGTCTTCGGAACCTCTGCGAGAAACGCCGGGGCTGGG
GCCGGCTCCTAATGCACGTCAGACATTGGCTGAGTCCGAGGGACAGCGCG
GCGAGAGATCATCCAGGCGGCCTCGTTGACAGGTTGGACAGGATTCTGAA
CCATTTCGGGATGCACGACACGGCCGTAGGGATGAGCACGGTCCCGGAGG
TCCTGGTGGCCGAGCACTGCGGGCTCAAGGTGCTGGTCTTGAGCGGCATC
TACCACGTCACGCAGGAGAACACCGTAAAACTCACCGCCATTCCCCACTA
CGAGTACAAGACGCACAAGCGGGTGGCCTTCGAGATGACACGCCGGCGGG
AGGAGGAGTATCGGCAGAGCCAGGTGGCGCCTAAGATGACGGCCCTGCTT
CGGGGGCTGCTTCGAGCCTTAGGGGACACCAGCGACATAGCCATGGACTA
CGACGTGGCCGAGATCGCCCGCTGGCGCTTTCCCACCACCCTGTGCGTGT
CGTGGCATCGCTTGATACTGGGGAGCACGTCGGTGGCTCTGGCACTGGGG
CTGCTGGTCACGGCGCTGGAGGAGCAGCGGCGGCGGCGGTAG

protein sequence of rna2414

>rna2414-protein ID=rna2414-protein|Name=rna2414|organism=Nannochloropsis gaditana|type=polypeptide|length=333bp
MIRFEWKTMGLGAVSEKIILIHPSPSTSCRMIASHRDSRHNKSLPVPLFP
YSCHHWDMLRQFRRYGSFCRRHRRIMRHCTHEFESHATALHPGRVVELPD
YAPSPVSLCQPPSFDAPSLGSPSFAITERQAIFSPRASQTHIWLQSLVKI
PLSLSAARKTHPNGPPKPRVQQITRPETLPLQAHAAVNRRVSHGMRLQDL
TAPHRRRCLRDGAVECQRMGHRYCHRKFDSLILAYPAPNNFSLYLPSSAR
NLDCLVRFILTIALKTTSMVSSSSYTYQCLAPHCLQDPTDTGESAEWHHF
LSKHISGPSLPRRETKTLPSFRSATIQAVELSH

mRNA from alignment at CM002459.1:327522..328751+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2414 ID=rna2414|Name=rna2414|organism=Nannochloropsis gaditana|type=mRNA|length=1230bp|location=Sequence derived from alignment at CM002459.1:327522..328751+ (Nannochloropsis gaditana)
ATGATACGTTTTGAATGGAAAACCATGGGTCTTGGTGCAGTCTCGGAGAA
AATAATTCTCATACACCCGTCACCATCTACATCATGCCGCATGATCGCAA
GTCATCGCGATTCCCGTCACAATAAGTCTCTTCCAGTTCCTCTCTTTGTG
CGAAAAAAaatcttccccttcctcgagcCTCAGTATCCAAGCCCTATTCC
TGCCATCACTGGGACATGCTGCGTCAATTTCGTCGTTACGGGTCCTTCTG
TCGCCGTCACCGCCGGATCATGCGGCACTGCACTCACGAATTCGAAAGCC
ACGCCACAGCGCTCCATCCCGGCCGAGTTGTTGAATTGCCGGACTACGCA
CCATCGCCCGTCTCCCTGTGCCAACCGCCCTCCTTTGATGCTCCATCGCT
TGGTTCCCCAAGCTTTGCAATCACTGAGCGTCAGGCCATATTTTCTCCCC
GTGCGAGCCAAACACACATCTGGCTCCAGAGCCTTGTGAAAATACCGCTC
TCCTTGTCCGCTGCCCGTAAAACGCACCCCAACGGCCCACCGAAGCCGCG
GGTCCAGCAGATCACACGGCCGGAAacgctccccctccaagcACATGCTG
CAGTGAATAGGAGGGTAAGCCATGGCATGAGATTGCAGGACTTAACCGCA
CCACATCGTCGTCGATGCCTGCGAGACGGTGCCGTGGAATGCCAGAGGAT
GGGTCACCGCTATTGCCACAGGAAGTTTGATTCACTTATTCTCGCTTACC
CGTCTGCTGCTTGAAGCAGAAACCCCCCCTCGTGAAAAGGCACCTCAGTC
ATCAATAGACCGGTGTAGCCTTCGGTGCAGTGCTGCATTTCCATCGTATT
TTTGTAACGTTTAAACTTGCCAGCCCCCCCAGATTTGGAGCGCACCAAAC
AATTTTTCCCTTTATCTTCCGTCAAGCGCACGTAATCTCGACTGTCTTGT
TCGATTCATTTTGACAATAGGTAAGAGGATGTGATAAAAGGGCGGCATTC
CATGGCTTCATATAGCTTTGAAGACAACATCTATGgtttcttcatcttcc
taTACGTACCAGTGCTTGGCGCCACATTGTTTGCAAGATCCAACAGATAC
GGGAGAGTCAGCAGAATGGCACCATTTTCTTTCTAAGCACATTTCAGGCC
CGTCActgccaaggagggaaactAAAACTTTGCCCTCTTTTCGATCTGCC
ACAATCCAAGCCGTTGAGCTGTCGCACTGA

Coding sequence (CDS) from alignment at CM002459.1:327522..328751+

>rna2414 ID=rna2414|Name=rna2414|organism=Nannochloropsis gaditana|type=CDS|length=4008bp|location=Sequence derived from alignment at CM002459.1:327522..328751+ (Nannochloropsis gaditana)
ATGATACGTTTTGAATGGAAAACCATGGGTCTTGGTGCAGTCTCGGAGAA
AATAATTCTCATACACCCGTCACCATCTACATCATGCCGCATGATCGCAA
GTCATCGCGATTCCCGTCACAATAAGTCTCTTCCAGTTCCTCTCTTTCCC
TATTCCTGCCATCACTGGGACATGCTGCGTCAATTTCGTCGTTACGGGTC
CTTCTGTCGCCGTCACCGCCGGATCATGCGGCACTGCACTCACGAATTCG
AAAGCCACGCCACAGCGCTCCATCCCGGCCGAGTTGTTGAATTGCCGGAC
TACGCACCATCGCCCGTCTCCCTGTGCCAACCGCCCTCCTTTGATGCTCC
ATCGCTTGGTTCCCCAAGCTTTGCAATCACTGAGCGTCAGGCCATATTTT
CTCCCCGTGCGAGCCAAACACACATCTGGCTCCAGAGCCTTGTGAAAATA
CCGCTCTCCTTGTCCGCTGCCCGTAAAACGCACCCCAACGGCCCACCGAA
GCCGCGGGTCCAGCAGATCACACGGCCGGAAacgctccccctccaagcAC
ATGCTGCAGTGAATAGGAGGGTAAGCCATGGCATGAGATTGCAGGACTTA
ACCGCACCACATCGTCGTCGATGCCTGCGAGACGGTGCCGTGGAATGCCA
GAGGATGGGTCACCGCTATTGCCACAGGAAGTTTGATTCACTTATTCTCG
CTTACCCCGCACCAAACAATTTTTCCCTTTATCTTCCGTCAAGCGCACGT
AATCTCGACTGTCTTGTTCGATTCATTTTGACAATAGCTTTGAAGACAAC
ATCTATGgtttcttcatcttcctaTACGTACCAGTGCTTGGCGCCACATT
GTTTGCAAGATCCAACAGATACGGGAGAGTCAGCAGAATGGCACCATTTT
CTTTCTAAGCACATTTCAGGCCCGTCActgccaaggagggaaactAAAAC
TTTGCCCTCTTTTCGATCTGCCACAATCCAAGCCGTTGAGCTGTCGCACT
GAATGATACGTTTTGAATGGAAAACCATGGGTCTTGGTGCAGTCTCGGAG
AAAATAATTCTCATACACCCGTCACCATCTACATCATGCCGCATGATCGC
AAGTCATCGCGATTCCCGTCACAATAAGTCTCTTCCAGTTCCTCTCTTTC
CCTATTCCTGCCATCACTGGGACATGCTGCGTCAATTTCGTCGTTACGGG
TCCTTCTGTCGCCGTCACCGCCGGATCATGCGGCACTGCACTCACGAATT
CGAAAGCCACGCCACAGCGCTCCATCCCGGCCGAGTTGTTGAATTGCCGG
ACTACGCACCATCGCCCGTCTCCCTGTGCCAACCGCCCTCCTTTGATGCT
CCATCGCTTGGTTCCCCAAGCTTTGCAATCACTGAGCGTCAGGCCATATT
TTCTCCCCGTGCGAGCCAAACACACATCTGGCTCCAGAGCCTTGTGAAAA
TACCGCTCTCCTTGTCCGCTGCCCGTAAAACGCACCCCAACGGCCCACCG
AAGCCGCGGGTCCAGCAGATCACACGGCCGGAAacgctccccctccaagc
ACATGCTGCAGTGAATAGGAGGGTAAGCCATGGCATGAGATTGCAGGACT
TAACCGCACCACATCGTCGTCGATGCCTGCGAGACGGTGCCGTGGAATGC
CAGAGGATGGGTCACCGCTATTGCCACAGGAAGTTTGATTCACTTATTCT
CGCTTACCCCGCACCAAACAATTTTTCCCTTTATCTTCCGTCAAGCGCAC
GTAATCTCGACTGTCTTGTTCGATTCATTTTGACAATAGCTTTGAAGACA
ACATCTATGgtttcttcatcttcctaTACGTACCAGTGCTTGGCGCCACA
TTGTTTGCAAGATCCAACAGATACGGGAGAGTCAGCAGAATGGCACCATT
TTCTTTCTAAGCACATTTCAGGCCCGTCActgccaaggagggaaactAAA
ACTTTGCCCTCTTTTCGATCTGCCACAATCCAAGCCGTTGAGCTGTCGCA
CTGAATGATACGTTTTGAATGGAAAACCATGGGTCTTGGTGCAGTCTCGG
AGAAAATAATTCTCATACACCCGTCACCATCTACATCATGCCGCATGATC
GCAAGTCATCGCGATTCCCGTCACAATAAGTCTCTTCCAGTTCCTCTCTT
TCCCTATTCCTGCCATCACTGGGACATGCTGCGTCAATTTCGTCGTTACG
GGTCCTTCTGTCGCCGTCACCGCCGGATCATGCGGCACTGCACTCACGAA
TTCGAAAGCCACGCCACAGCGCTCCATCCCGGCCGAGTTGTTGAATTGCC
GGACTACGCACCATCGCCCGTCTCCCTGTGCCAACCGCCCTCCTTTGATG
CTCCATCGCTTGGTTCCCCAAGCTTTGCAATCACTGAGCGTCAGGCCATA
TTTTCTCCCCGTGCGAGCCAAACACACATCTGGCTCCAGAGCCTTGTGAA
AATACCGCTCTCCTTGTCCGCTGCCCGTAAAACGCACCCCAACGGCCCAC
CGAAGCCGCGGGTCCAGCAGATCACACGGCCGGAAacgctccccctccaa
gcACATGCTGCAGTGAATAGGAGGGTAAGCCATGGCATGAGATTGCAGGA
CTTAACCGCACCACATCGTCGTCGATGCCTGCGAGACGGTGCCGTGGAAT
GCCAGAGGATGGGTCACCGCTATTGCCACAGGAAGTTTGATTCACTTATT
CTCGCTTACCCCGCACCAAACAATTTTTCCCTTTATCTTCCGTCAAGCGC
ACGTAATCTCGACTGTCTTGTTCGATTCATTTTGACAATAGCTTTGAAGA
CAACATCTATGgtttcttcatcttcctaTACGTACCAGTGCTTGGCGCCA
CATTGTTTGCAAGATCCAACAGATACGGGAGAGTCAGCAGAATGGCACCA
TTTTCTTTCTAAGCACATTTCAGGCCCGTCActgccaaggagggaaactA
AAACTTTGCCCTCTTTTCGATCTGCCACAATCCAAGCCGTTGAGCTGTCG
CACTGAATGATACGTTTTGAATGGAAAACCATGGGTCTTGGTGCAGTCTC
GGAGAAAATAATTCTCATACACCCGTCACCATCTACATCATGCCGCATGA
TCGCAAGTCATCGCGATTCCCGTCACAATAAGTCTCTTCCAGTTCCTCTC
TTTCCCTATTCCTGCCATCACTGGGACATGCTGCGTCAATTTCGTCGTTA
CGGGTCCTTCTGTCGCCGTCACCGCCGGATCATGCGGCACTGCACTCACG
AATTCGAAAGCCACGCCACAGCGCTCCATCCCGGCCGAGTTGTTGAATTG
CCGGACTACGCACCATCGCCCGTCTCCCTGTGCCAACCGCCCTCCTTTGA
TGCTCCATCGCTTGGTTCCCCAAGCTTTGCAATCACTGAGCGTCAGGCCA
TATTTTCTCCCCGTGCGAGCCAAACACACATCTGGCTCCAGAGCCTTGTG
AAAATACCGCTCTCCTTGTCCGCTGCCCGTAAAACGCACCCCAACGGCCC
ACCGAAGCCGCGGGTCCAGCAGATCACACGGCCGGAAacgctccccctcc
aagcACATGCTGCAGTGAATAGGAGGGTAAGCCATGGCATGAGATTGCAG
GACTTAACCGCACCACATCGTCGTCGATGCCTGCGAGACGGTGCCGTGGA
ATGCCAGAGGATGGGTCACCGCTATTGCCACAGGAAGTTTGATTCACTTA
TTCTCGCTTACCCCGCACCAAACAATTTTTCCCTTTATCTTCCGTCAAGC
GCACGTAATCTCGACTGTCTTGTTCGATTCATTTTGACAATAGCTTTGAA
GACAACATCTATGgtttcttcatcttcctaTACGTACCAGTGCTTGGCGC
CACATTGTTTGCAAGATCCAACAGATACGGGAGAGTCAGCAGAATGGCAC
CATTTTCTTTCTAAGCACATTTCAGGCCCGTCActgccaaggagggaaac
tAAAACTTTGCCCTCTTTTCGATCTGCCACAATCCAAGCCGTTGAGCTGT
CGCACTGA

Synonyms

Publications