rna2411, rna2411 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2411
Unique Name	rna2411
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2253
Alignment location	CM002459.1:322246..324072 -

Link to JBrowse

Properties


Property Name	Value
Product	tripeptidyl peptidase ii
Orig transcript id	gnl\|cribi\|Naga_100004g45.9105.mrna
Orig protein id	gnl\|cribi\|Naga_100004g45.9105
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:322246..324072 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g45	gene2305	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28174.1	cds2403	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2411	rna2411-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:322246..324072-
coding sequence from alignment at CM002459.1:322246..324072-

mRNA sequence

>rna2411 ID=rna2411|Name=rna2411|organism=Nannochloropsis gaditana|type=mRNA|length=2253bp
ATGCTCATGAACAACGGACGCGGCTTCAATATCACGGTGGACGGGTCGCG
ACTGCCCCACGGGCTGCACTTCTGCAAAGTGCTCGGACACGACGTCGCCC
ACCCGGAGCTCGGTCCTTTCTTCGAGGTGCCGATCACCGTGGTCAAGCCA
CTGGAGCTTGCGAAGCCCCCACCGACCCCCCTGGATCTCGGCGTCTACGC
TCTTTCCTCAGGTCAGGTGGAGCGGAATTTCCTGGTCCCCCCCGCCGGAG
CCACCTGGATGGACGTGACCTTATCCGACCGCCGTGCTGTCCATGCTGTC
GCCCCTCCCTCGGCTCCAGATCAGATCGCATCAGCGATGGGAAAAGATCC
GGGCTTGGCCACGAATAGCCGCACCACTGGCAATGGAGGTCAAGTCATCA
TTGTGGCCCTTCAAACCGTGCAACTGCTCCCGCAAACTCCTTTCCGAGAT
ACGGAATTCGAGAAATACGTGGCATTGGCCCCGGGACAGAAGGAGACATT
CAGCATTCTGGTCGAGGCGGGAGTGACGGTGGAGATAGCATTGGCGCAAT
ACGCGATCTCGGAGGGGAGCACGACCGTGGGCATAACGGTGGAGTTTCGG
GGCCTCTCCCCTCGGGGCAACAGCCAGGACATCGTCCTGCACGGCGGACA
TGGTTGCATACACGTGCCCGTCGAGGCACAGGTCCACGACGAGGAAATCG
CCCCTATTTGCAAACTGGACAGATGGCAGACGAAACTGACTCCCAACTCC
TCCAGCATCAAGGCATTGGACCCTGATCGCGACGTCCTCGCGGATGGCAA
GCAAATATATCAGCTGCTTCTCGAGTACAAATTCACCACGGAGACAGGGG
GCGAGGAAGTGATCCCGCGGGCCCTGCTCTTGAACGGAGTCTTGTACGAG
TCGCCCATGGAGTCCCAATTTTTCATGGCATTCGACGCGAACAAGAAGTA
TCTGGGATGCGGGGACGCATGGCCGGGGAAGGTCAAATGCCCCAAGGGCG
AGAATGTGCTCAGATACAGCGTGCGGCACGATGATCTTTCACTCCTGCAA
AGCCTGAAAGGGCTGGTGGTGGTGATTGAGCGGGCGCTGAAGGAAGGCAA
GGAAGTGAGCGTCCCCGACTTTGCCACGCGGGAGGAGGCCATGACCCGGA
AGAAGCGAGGGGGTAATGGGGCCAGTCGCATGCTGCGCCAGGGGTGTGCG
ACCTCGTTCTTCTTAGCCGAGCCAGCCTTCGACAAGATGCCGAAAGGCGT
CAAAGCCGGGGACCTTTTGACTGGTTCGCTGGTCCTAGAGAAGGCCAAAG
GGAAGGAGCAACCTCAGTCGAGACGGCCCCGCGGTTTCCGTGTATCCTAT
GTTGTTCCTCCCCCTCCACCGGAGGCGCCCAAAGGCCCCAGCAAGCCCAC
GGCTCAAGACAAACGCACGGAGGAAACAAAACTCGAAGAGAAAGTCAGGG
ATGTGAAAGTGCAGCATTTAGGTGGCCTGACAGACAGCACAGCCTTTGAG
AGCTTGTTTAAGAAGCTTTTGGATGATTACCCTGCTCATATTCCCTTGCA
TCAGGCCCGGCTTCGATTTCTGGACGAGGAAAACTCGAGGAATGAGCGCT
TACCTGATGTGGTAAGTGCAGCAAACAGCGTGATAGACTTGGTAGATAGA
CAGGCACTGGCCTCACACTTCGGAGTGAAGGTAGATGAGAACGATCCGGA
GGCAATGAAAGTGCGAGGGGAAATGGAGGAAAAGAAAGCAGCCTTGGTGG
ATGCATTGGCCCGAAAGGCCAGGGCGTTGATTGACAGGAGAGGAGGAGGA
GAAAAGAAAGAGGGTGGGGGTGTCGGACAGCATGTCGAAGTGAGCCCCGA
TGCCGAAAAGCAAGGATCCGATGAGGCTGGAGAAAAGGAAAGAGACGGAG
AGGACCGAAACGGAGATTTGCAAGGCGTGCTTGGCCACGAGGCACGGAAG
AGCGGAGTACATGGGGCCGATGTTGCAGCCGTGGTGGCTGAGCTCATGAA
GTGGGATTCACTGGACCAAGATAAGTACGCACGCCTGTTGTTGGATCGAG
ATGCCGGCTACGGGCGATGGGGCTTGGTTCTCAAGCTTCTGAACAAGCTT
TTGGGTGACGCGGGGAATTCCAGTGGCATCGACAAGAAGGAATTGTACGA
GCGTCGTTTGAACGTCTTCGAGCACCTAGGATGGACGCACTTGATTGAGA
ATGAGCGAAAATGGCGAGTCATCGATTGCCCTACGAGCTACAGCCTCTTC
TGA

protein sequence of rna2411

>rna2411-protein ID=rna2411-protein|Name=rna2411|organism=Nannochloropsis gaditana|type=polypeptide|length=608bp
MASSTSTNNDLTFPDAGLLPKEETGAAAFLSQYPHFDGRGVVVAILDTGV
DPGGAGLQVTSDGKPKIIDMIDCSGSGDVDTSTTVEALPPAENGSPDSGA
KLNIKGLTGRTLHLNMAWPNPSGKWHIGVKRAVELYPNGLKSRVAKEMKK
EWTLKHREVEAGLQREVAAFKASTGTGAMTRDEIEDMADREARASQLEEI
AKGYEDAGPLYDVVVWFDGSAWQAAVDVREDGDLRSWEPMTDFHVKRDWR
TFNEKLDNLNFAVNIYEEGNICSFVVDAGSHGTHVAGITAAYHPECPSRN
GLAPGAQIVSLKIGDSRLGSMETGVAFVRALREAVRLKVDMLNVSYGEAT
AVTGSGRVVELIEEIVHKHGIVYVGSASNNGPALSTVGAPGGTGTATIAA
GAYLTPSMMEAGYSLRRPFAAVNFTWSSVGPAYDGAQGPTIMAPGGAITS
VPTWTLQRGMLMNGTSMAAPNACGSLALVLSALKAQGLPYSPHLLRRAVM
ATAKTLPSLHPLVQGHGMVQVGPALDYVMTSAAIPYVRTPLKVSVAGIKG
NSCRGVYLREAGESRVSRDFKVSVEALFHEKAASHEKVNFEARVALSLSE
GAGEGGGE

mRNA from alignment at CM002459.1:322246..324072-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2411 ID=rna2411|Name=rna2411|organism=Nannochloropsis gaditana|type=mRNA|length=1827bp|location=Sequence derived from alignment at CM002459.1:322246..324072- (Nannochloropsis gaditana)
ATGGCATCGAGTACCAGCACAAACAACGACCTCACTTTCCCAGACGCGGG
GCTCTTGCCCAAAGAGGAGACTGGTGCCGCTGCTTTCTTGAGCCAGTACC
CGCACTTTGATGGGAGGGGTGTGGTGGTGGCAATATTAGACACAGGCGTG
GACCCGGGTGGTGCGGGGCTTCAGGTCACTTCCGATGGCAAACCTAAAAT
CATCGACATGATCGATTGTAGCGGCTCGGGTGACGTAGATACATCAACCA
CTGTCGAAGCCCTGCCTCCTGCTGAAAATGGAAGCCCGGACAGCGGCGCG
AAGCTCAACATCAAAGGTCTGACAGGACGTACGCTCCACCTGAACATGGC
CTGGCCCAATCCAAGTGGCAAGTGGCACATCGGGGTCAAGCGCGCAGTCG
AACTCTACCCCAACGGACTCAAGTCTCGCGTGGCAAAGGAGATGAAGAAA
GAATGGACATTGAAACACAGGGAAGTGGAGGCGGGCCTGCAGCGGGAGGT
GGCAGCCTTCAAGGCCTCGACTGGCACGGGCGCGATGACCCGGGACGAGA
TAGAGGACATGGCGGACCGTGAAGCGCGCGCGTCCCAGCTTGAGGAGATA
GCCAAGGGGTACGAGGACGCGGGGCCATTGTACGATGTGGTGGTATGGTT
TGACGGGAGTGCGTGGCAGGCAGCGGTGGATGTACGGGAAGACGGAGACC
TGAGGTCTTGGGAGCCCATGACCGATTTCCACGTAAAGCGCGATTGGCGC
ACTTTTAACGAGAAATTAGACAATCTGAATTTTGCCGTCAACATCTATGA
GGAAGGAAACATCTGCTCATTCGTGGTAGACGCAGGCTCGCACGGCACCC
ACGTAGCCGGCATCACCGCGGCGTACCACCCGGAATGCCCGAGCCGGAAC
GGCCTGGCCCCCGGTGCACAAATTGTATCATTGAAAATTGGCGATTCCCG
ACTCGGGTCGATGGAGACGGGCGTGGCGTTCGTCCGTGCTTTGCGGGAGG
CGGTCCGCCTGAAGGTGGACATGTTGAACGTGTCGTACGGAGAAGCAACG
GCGGTGACGGGGAGCGGCCGCGTCGTCGAGCTCATCGAGGAGATCGTGCA
CAAGCACGGGATCGTCTACGTGGGCAGCGCGAGCAACAACGGCCCTGCCC
TCTCCACGGTGGGCGCCCCGGGGGGAACGGGTACGGCCACCATCGCGGCC
GGCGCCTACTTGACGCCGTCGATGATGGAGGCTGGCTACTCCTTGCGGAG
ACCCTTCGCCGCCGTCAACTTCACCTGGTCGAGCGTAGGGCCTGCCTATG
ACGGCGCGCAGGGCCCCACCATCATGGCCCCCGGGGGCGCGATCACCAGC
GTGCCCACTTGGACCCTGCAGAGGGGCATGCTCATGAATGGGACCTCCAT
GGCGGCCCCCAATGCCTGCGGCTCCCTGGCCCTCGTCCTCTCGGCTCTCA
AGGCGCAAGGCCTCCCCTACTCTCCTCACCTGCTCCGTCGGGCCGTCATG
GCGACCGCCAAGACCCTCCCCTCTCTCCATCCCTTGGTGCAGGGCCACGG
CATGGTACAGGTGGGACCTGCGCTGGACTACGTGATGACTTCCGCCGCCA
TACCCTACGTGCGGACCCCCCTGAAAGTAAGCGTGGCGGGCATCAAGGGT
AATTCCTGCCGAGGCGTGTACTTGCGGGAAGCAGGGGAGAGTCGGGTGTC
TCGTGACTTCAAGGTCAGCGTCGAAGCTCTCTTTCATGAGAAGGCCGCTT
CCCACGAGAAGGTCAACTTCGAGGCGCGCGTAGCCCTGTCGCTGTCCGAG
GGAGCGGGGGAGGGGGGGGGGGAATGA

Coding sequence (CDS) from alignment at CM002459.1:322246..324072-

>rna2411 ID=rna2411|Name=rna2411|organism=Nannochloropsis gaditana|type=CDS|length=1827bp|location=Sequence derived from alignment at CM002459.1:322246..324072- (Nannochloropsis gaditana)
ATGGCATCGAGTACCAGCACAAACAACGACCTCACTTTCCCAGACGCGGG
GCTCTTGCCCAAAGAGGAGACTGGTGCCGCTGCTTTCTTGAGCCAGTACC
CGCACTTTGATGGGAGGGGTGTGGTGGTGGCAATATTAGACACAGGCGTG
GACCCGGGTGGTGCGGGGCTTCAGGTCACTTCCGATGGCAAACCTAAAAT
CATCGACATGATCGATTGTAGCGGCTCGGGTGACGTAGATACATCAACCA
CTGTCGAAGCCCTGCCTCCTGCTGAAAATGGAAGCCCGGACAGCGGCGCG
AAGCTCAACATCAAAGGTCTGACAGGACGTACGCTCCACCTGAACATGGC
CTGGCCCAATCCAAGTGGCAAGTGGCACATCGGGGTCAAGCGCGCAGTCG
AACTCTACCCCAACGGACTCAAGTCTCGCGTGGCAAAGGAGATGAAGAAA
GAATGGACATTGAAACACAGGGAAGTGGAGGCGGGCCTGCAGCGGGAGGT
GGCAGCCTTCAAGGCCTCGACTGGCACGGGCGCGATGACCCGGGACGAGA
TAGAGGACATGGCGGACCGTGAAGCGCGCGCGTCCCAGCTTGAGGAGATA
GCCAAGGGGTACGAGGACGCGGGGCCATTGTACGATGTGGTGGTATGGTT
TGACGGGAGTGCGTGGCAGGCAGCGGTGGATGTACGGGAAGACGGAGACC
TGAGGTCTTGGGAGCCCATGACCGATTTCCACGTAAAGCGCGATTGGCGC
ACTTTTAACGAGAAATTAGACAATCTGAATTTTGCCGTCAACATCTATGA
GGAAGGAAACATCTGCTCATTCGTGGTAGACGCAGGCTCGCACGGCACCC
ACGTAGCCGGCATCACCGCGGCGTACCACCCGGAATGCCCGAGCCGGAAC
GGCCTGGCCCCCGGTGCACAAATTGTATCATTGAAAATTGGCGATTCCCG
ACTCGGGTCGATGGAGACGGGCGTGGCGTTCGTCCGTGCTTTGCGGGAGG
CGGTCCGCCTGAAGGTGGACATGTTGAACGTGTCGTACGGAGAAGCAACG
GCGGTGACGGGGAGCGGCCGCGTCGTCGAGCTCATCGAGGAGATCGTGCA
CAAGCACGGGATCGTCTACGTGGGCAGCGCGAGCAACAACGGCCCTGCCC
TCTCCACGGTGGGCGCCCCGGGGGGAACGGGTACGGCCACCATCGCGGCC
GGCGCCTACTTGACGCCGTCGATGATGGAGGCTGGCTACTCCTTGCGGAG
ACCCTTCGCCGCCGTCAACTTCACCTGGTCGAGCGTAGGGCCTGCCTATG
ACGGCGCGCAGGGCCCCACCATCATGGCCCCCGGGGGCGCGATCACCAGC
GTGCCCACTTGGACCCTGCAGAGGGGCATGCTCATGAATGGGACCTCCAT
GGCGGCCCCCAATGCCTGCGGCTCCCTGGCCCTCGTCCTCTCGGCTCTCA
AGGCGCAAGGCCTCCCCTACTCTCCTCACCTGCTCCGTCGGGCCGTCATG
GCGACCGCCAAGACCCTCCCCTCTCTCCATCCCTTGGTGCAGGGCCACGG
CATGGTACAGGTGGGACCTGCGCTGGACTACGTGATGACTTCCGCCGCCA
TACCCTACGTGCGGACCCCCCTGAAAGTAAGCGTGGCGGGCATCAAGGGT
AATTCCTGCCGAGGCGTGTACTTGCGGGAAGCAGGGGAGAGTCGGGTGTC
TCGTGACTTCAAGGTCAGCGTCGAAGCTCTCTTTCATGAGAAGGCCGCTT
CCCACGAGAAGGTCAACTTCGAGGCGCGCGTAGCCCTGTCGCTGTCCGAG
GGAGCGGGGGAGGGGGGGGGGGAATGA

Synonyms

Publications