rna2407, rna2407 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2407
Unique Name	rna2407
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2296
Alignment location	CM002459.1:311711..314274 +

Link to JBrowse

Properties


Property Name	Value
Product	ethanolamine-phosphate cytidylyltransferase
Orig transcript id	gnl\|cribi\|Naga_100004g40.9136.mrna
Orig protein id	gnl\|cribi\|Naga_100004g40.9136
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:311711..314274 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g40	gene2301	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2407	rna2407-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28205.1	cds2399	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:311711..314274+
coding sequence from alignment at CM002459.1:311711..314274+

mRNA sequence

>rna2407 ID=rna2407|Name=rna2407|organism=Nannochloropsis gaditana|type=mRNA|length=2296bp
GCTACACCATCATCGTTTTGCACACTGCGCCTCCCCAGCCATTTTCCTGT
GCGCATTTTAATCAACTCACCAAAAACGTCCACGTTACTACATCAAAGTG
TAATAACGCAGGTGCATAAAGACAGGAGCAACGTCACACAAAGCGAAAGC
AGGCGCGACTGTGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGCA
TCTCTCTCTCTAGTGGTGGAGTTGCGCGCGGGCTGGTCGCCCGTCTCCTT
GCTCGCATTGCTGCGCGGCGTAAAAATATTTCTTGGGCAGTCTCAGCGAC
CGGTAGCTCCGCCTTACCACGCCCAACTCGAATCCAAGCTGGTCGAGTCA
ACCGATTTCTGCAGCGCCTCACCGTCGCGGCCCTGAAAGCGCACAGACAG
GCGTGGACCGCCTCTTCACGGCAAAGCACATTGCAACAACATTGGGTTTA
TCGCCGCCGCCGTTTTCCCTTCTTTCGAGCGGGTCACCCGTGGAAACGGC
GTGTTTTTCCTCGTGTAATGAATGTTGCCAGGGACGTTGTCCTTGCACAT
GGAGAAGACGGTATTTTGCATAGCACCGCCTTCGTCGTCAGCTTCAAACC
GGTCAATTCATTGTATAAATGGCTGGTTGGGAGGCCAGTCCTGGAATCTT
TGCATGCACGGCGTGGCAGGTCGTCAGGCGAAACGGCAACGAACGAGGAG
GGCATCGAAACCCGAGAAGACTCCCGCGGAGTCGGTGCCACAGGTGCCAC
ACATGCACAGGGCATGCCGTCGAGCTCCGCAGGGGAACTTGACGGAGACC
TGGATCGCCGCGGCCCTGCCAATACGTTGGCCTCATCCATCCTTTCAAGT
ATCGGCTTGACGGCGCTCCCCCACCCCCCGACAGCAGCGATAGAAAGGGG
AGGGGTGGCAAGAGCAGCTCATGAGACGTCTTCCTTGGCACACGGCGAGG
CTCAGTCACGGGTCTCTGGGCAAAATAAGTCCTTTAAGCAGCTAAAGATG
CCTTCGTCGGGCCTAGACCCCCGGGCACCTGCGCCTGACAGGCCCCAGGA
GAAAGAAGCGCCGCTGGACGGTGGCTTCCACAAGGACGGGCGACGGGAAG
GCGTGGAGGTGTATGTGCGGGGGGAGCTGGTCCCAGGGCTTGAGATGGTG
GTGGATGATCAAGGGGCTTGCGTTTTTGCGGAGACAGGGACCACGCACCC
GTCCCGCGCCGCGCTGCAGTCTCTCTTGACGCTGAGGAGACGGAAGGGAG
AGCGGGAGGTGGAGGGATTACTCAAGCCAGGGCCGAACCCAGTGGACTTT
GTCTACTGCAATCCATACGGGGATGTGAGTGTGCGCGCCACCTTTCACCT
GTGGGGGTCGAGGGATCGGGTTGTGGTCAGTGACATCGACGGAACCATCA
CCAAAAGCGACATCCGGGGCTACATCGACAGCGTGCACCTCGGGAACCAT
GAATACACGCATCAGGGCATCGGTCGACTCTTCTCCCATTTGCACCATGC
CCACCATCTCCGCTTTGTCTACCTGACCTCGCGTCCGATATCGCTCCTGG
AGGCGACCCGGAAGTACTTGGCGAACGTGTACCAAGAGGAGGGCTTTCGT
CTCCCCCACGGGCCTGTCTTTACCTCGATGGACTCGCTCACACGCGTCTT
GTACCGGGAGCTAGTGGAAAAGACGATACGCTACATGAAGGCCCAGGTCC
TGAACGACATTCGAAGCACCTTCCAGAAGGCTGGTCGACCCGAAGGCGAC
CAGGTCTTTCTATTCGGCTTTGGGAACAAAAGTGCGGACGGACAGGCCTA
TGAAATGGCTGGTGTGGACCCTCAGAGCATCTTCATCATCAATCCCAGCA
GCGAGGTCCGCATGTTCGCCTCCTACAAGGAGTCGTCTTCCTTCTCTTCT
TCTCCGTCGTCTTATCCCTCCCGCGAAGGTATAGCTGCGAACCGCACGTG
TGAAGGGAGCAAGCAAGACCCCCAGTCCGGCACCGAAAGCGCAGCATACA
GGCATGTGGACAGAGGAAGCTCGCAAGAAGAGCACAGGGAAAATTCCGAC
AGTGACGGTGGGTCCACGTCTAGCATGCAGTCGATACGCATGGACCGCAA
TGTGTCGGAAGGAAAGGGAGATGAGGGGAGCCATCACGGCGCCACATTTG
CGTCGTACTCAGATGCACGCTTACTGCGATTGCTTGAGCAGCGCTTGGCA
GACGTCGAAGGGGAGCAGAGCAGAAATGATGTAAATTGTAAAGCAACGGA
TGATGAAAGTTCAAAAGAAAAAAAATGAAATAGAGTGAAATTGGAA

protein sequence of rna2407

>rna2407-protein ID=rna2407-protein|Name=rna2407|organism=Nannochloropsis gaditana|type=polypeptide|length=492bp
MSPSVESCDATAGGFSQGNGHNYKNKLQAIWCILQAKTLDLLDSPFMLSL
TQRLAVLLEALGVPPPYPEPDQIVLCVTAVLSTLLLYFLLFGKRHRLRRK
MLAKDLREARKKVQELEEKLLEMEVKEEGAGPKGDQEPVRIWMDGCFDMM
HYGHMNAFRQGKALGTYLVVGVNSDATITACKGPPVMNDEERLAAVEGCR
FVDEVVPDVPYIMDEDYLKMVMEKYRIDFVVHGDDPCIVNGRDVYELPQS
MGKYRTIPRTEGVSTTDIVGRMLLMSRRHHQRTMSTGSQTGQLASEKKTQ
GGALQEGVSPSEIEALEQQLHHQEGAAFYRRSRFLTTSRMIRLFSAGMRA
GPPQPGSQVVYIDGSWDMFHAGHVTTLKKIKEGRCLPEGQPVFLIVGVHN
DQVVNAQRGSNFPIMNLHERVLSVLGCKYVDDVLIDAPYTVTREMIASLK
LSLVLHGRHRDDIEDEGTWGGGWGEGGKEGKGRKTLLPCRKR

mRNA from alignment at CM002459.1:311711..314274+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2407 ID=rna2407|Name=rna2407|organism=Nannochloropsis gaditana|type=mRNA|length=2564bp|location=Sequence derived from alignment at CM002459.1:311711..314274+ (Nannochloropsis gaditana)
TCCACCTTCATGCACTCGACAAGCTCAGACAATCACCACGTTCTCTCAAT
AGTGCGGTATTCTTGCGATTTTAAAAGCCAGCGTGCAACGGGCCTGGATC
TACTGGCGCTTGTGGGGAGAGCTCTATAAGGCTCGAGGTGGTCCCGGCGG
GCAACGACTCGGCAGGCTTGAATCGTCCCACACGGCCAGAGGCGCCGCAG
CAGCTCCTTTTTGCCCGCCCGACCCGATAtttggagaggaaagggtgacA
TGTCGCCTTCTGTAGAGTCCTGCGACGCGACGGCTGGTGGATTCAGTCAA
GGTCAGGTCAAGAGGAGTTCCAGTCATGCTTGCATCACCCTAACTGTGTC
CCCTACCTCGCCCCCCATCGTGCAGGAAACGGTCACAATTACAAGAACAA
ACTACAAGCTATCTGGTGCATCTTACAGGCGAAGACTCTCGACCTTTTGG
ACAGTCCATTTATGCTCTCCCTTACGCAGCGACTGGCTGTTCTcttggag
gccttgggcGTCCCGCCGCCCTACCCGGAGCCCGATCAAATTGTCCTTTG
CGTCACGGCCGTTCTCAGCACCCTACTCCTATATTTTTTGCTTTTCGGCA
AGCGGCATCGACTCAGAAGGAAAATGCTGGCGAAAGATTTGCGGGAAGCG
CGGAAAAAGGtgcaagagctggaggagaaattgctggagatggaggtgaa
ggaggagggcgccggtCCTAAAGGCGACCAAGAGCCCGTTCGTATTTGGA
TGGATGGCTGCTTCGACATGATGCACTACGGTCACATGAACGCCTTTCGC
CAAGGCAAGGCTCTGGGGACCTATTTGGTGGTGGGCGTGAATTCGGACGC
CACCATCACGGCTTGCAAGGGCCCGCCCGTGATGAACGACGAGGAGCGCC
TGGCCGCGGTGGAGGGCTGCCGCTTCGTGGACGAGGTAGTCCCGGACGTG
CCCTACATCATGGATGAGGACTATTTGAAGATGGTGATGGAGAAATACCG
GATCGACTTCGTCGTGCACGGCGACGACCCCTGCATCGTCAACGGTCGGG
ACGTGTACGAGCTCCCTCAGAGCATGGGGAAGTACCGAACGATACCGCgc
acggagggggtgagCACCACGGACATCGTGGGCAGGATGCTTTTGATGAG
CCGGCGGCACCATCAACGGACCATGTCGACGGGCTCGCAGACGGGCCAGT
TGGCctcggagaagaagacgcaAGGCGGGGCTTTGCAAGAGGGGGTGTCC
CCCTCGGAGATCGAGGCGCTGGAGCAGcagctccaccaccaggaaGGCGC
GGCATTCTACCGACGGTCCCGCTTTCTGACCACCTCCCGGATGATTCGCT
TGTTCTCCGCGGGCATGCGCGCGGGCCCCCCCCAGCCGGGTAGCCAGGTC
GTGTACATAGATGGGAGCTGGGACATGTTCCACGCCGGACACGTCACGAC
GCTCAagaagatcaaggagggTCGGTGCCTCCCTGAGGGCCAGCCCGTGT
TCCTGATTGTGGGGGTGCACAACGATcaggtggggggaggcgacggggag
gggaggccagGGGTCGACCATGGGAACAAGCCAACGAATCCTGACCTCTC
TCCGGGACTCTCTtctctcatccctccttaccCTAACTGcggcccttccc
ctccccctgtcttCTCTCAGGTGGTGAATGCCCAGCGTGGCTCCAACTTC
CCGATCATGAATTTGCACGAGCGCGTCTTGTCCGTGTTGGGGTGTAAGTA
CGTGGACGACGTCCTGATCGACGCTCCGTACACCGTGACGCGGGAAATGA
TCGCTTCCCTCAAGCTTTCTCTGGTCCTGCATGGCAGGCATAGGGACGAt
atcgaggacgaggggacctggggggggggctggggggagggagggaagga
ggggaaggggaggaagaccctTTTGCCGTGCCGAAAGAGATGAAAATATT
TATGGAGATATCCTCAGACTGTGACCTGTCGGTGCGTGAGATTGTCTCCA
GGATTCAGAAGAATCAGGAGCTTTTCGTGGCCAAGTACAGTAAGAAAAAG
GTGGCCGAAGACAACTACTACAATGCCCGGTatgccttggaggaggaggg
gaacggggggTCTGAGGTACGAAACGGAGAGCATTAGAGCAGGAGGAGTC
GATGAGAACAACATTGGCCGATGGGGGCGCTCGCGTGGCAATGACTTCCA
CCCGTGATGATCAGGAGCCGTTTCCACAAGAGTCATGTCGAGCAGTTGAA
TGTTCCGGTGACATAGAAGCATGTGTGCCATGGATTAGGAGGAGGATGTA
GCGAAATCGTATATCAAATGTGCAGAGAaatgtggggagggaaagcaagg
ggaagggtgtAGGTAGAGGCAGTGTATCAAGTACAGGCAGGCAACAACTG
GAAGATATGCAAGCACTGCAAGCGCACATGCGACCGCCTgtgggaggtag
gagggTCTCCCGCACCGAAAAATGCACAAAGGGTAAGACAAGGAGACCTT
GAGAAACAGCCTCATATCGTTCACACTCCGGGAGTTGGTGGCGTGGAGAA
TTATTTTCCTTTCA

Coding sequence (CDS) from alignment at CM002459.1:311711..314274+

>rna2407 ID=rna2407|Name=rna2407|organism=Nannochloropsis gaditana|type=CDS|length=4437bp|location=Sequence derived from alignment at CM002459.1:311711..314274+ (Nannochloropsis gaditana)
ATGTCGCCTTCTGTAGAGTCCTGCGACGCGACGGCTGGTGGATTCAGTCA
AGGAAACGGTCACAATTACAAGAACAAACTACAAGCTATCTGGTGCATCT
TACAGGCGAAGACTCTCGACCTTTTGGACAGTCCATTTATGCTCTCCCTT
ACGCAGCGACTGGCTGTTCTcttggaggccttgggcGTCCCGCCGCCCTA
CCCGGAGCCCGATCAAATTGTCCTTTGCGTCACGGCCGTTCTCAGCACCC
TACTCCTATATTTTTTGCTTTTCGGCAAGCGGCATCGACTCAGAAGGAAA
ATGCTGGCGAAAGATTTGCGGGAAGCGCGGAAAAAGGtgcaagagctgga
ggagaaattgctggagatggaggtgaaggaggagggcgccggtCCTAAAG
GCGACCAAGAGCCCGTTCGTATTTGGATGGATGGCTGCTTCGACATGATG
CACTACGGTCACATGAACGCCTTTCGCCAAGGCAAGGCTCTGGGGACCTA
TTTGGTGGTGGGCGTGAATTCGGACGCCACCATCACGGCTTGCAAGGGCC
CGCCCGTGATGAACGACGAGGAGCGCCTGGCCGCGGTGGAGGGCTGCCGC
TTCGTGGACGAGGTAGTCCCGGACGTGCCCTACATCATGGATGAGGACTA
TTTGAAGATGGTGATGGAGAAATACCGGATCGACTTCGTCGTGCACGGCG
ACGACCCCTGCATCGTCAACGGTCGGGACGTGTACGAGCTCCCTCAGAGC
ATGGGGAAGTACCGAACGATACCGCgcacggagggggtgagCACCACGGA
CATCGTGGGCAGGATGCTTTTGATGAGCCGGCGGCACCATCAACGGACCA
TGTCGACGGGCTCGCAGACGGGCCAGTTGGCctcggagaagaagacgcaA
GGCGGGGCTTTGCAAGAGGGGGTGTCCCCCTCGGAGATCGAGGCGCTGGA
GCAGcagctccaccaccaggaaGGCGCGGCATTCTACCGACGGTCCCGCT
TTCTGACCACCTCCCGGATGATTCGCTTGTTCTCCGCGGGCATGCGCGCG
GGCCCCCCCCAGCCGGGTAGCCAGGTCGTGTACATAGATGGGAGCTGGGA
CATGTTCCACGCCGGACACGTCACGACGCTCAagaagatcaaggagggTC
GGTGCCTCCCTGAGGGCCAGCCCGTGTTCCTGATTGTGGGGGTGCACAAC
GATcagGTGGTGAATGCCCAGCGTGGCTCCAACTTCCCGATCATGAATTT
GCACGAGCGCGTCTTGTCCGTGTTGGGGTGTAAGTACGTGGACGACGTCC
TGATCGACGCTCCGTACACCGTGACGCGGGAAATGATCGCTTCCCTCAAG
CTTTCTCTGGTCCTGCATGGCAGGCATAGGGACGAtatcgaggacgaggg
gacctggggggggggctggggggagggagggaaggaggggaaggggagga
agaccctTTTGCCGTGCCGAAAGAGATGAATGTCGCCTTCTGTAGAGTCC
TGCGACGCGACGGCTGGTGGATTCAGTCAAGGAAACGGTCACAATTACAA
GAACAAACTACAAGCTATCTGGTGCATCTTACAGGCGAAGACTCTCGACC
TTTTGGACAGTCCATTTATGCTCTCCCTTACGCAGCGACTGGCTGTTCTc
ttggaggccttgggcGTCCCGCCGCCCTACCCGGAGCCCGATCAAATTGT
CCTTTGCGTCACGGCCGTTCTCAGCACCCTACTCCTATATTTTTTGCTTT
TCGGCAAGCGGCATCGACTCAGAAGGAAAATGCTGGCGAAAGATTTGCGG
GAAGCGCGGAAAAAGGtgcaagagctggaggagaaattgctggagatgga
ggtgaaggaggagggcgccggtCCTAAAGGCGACCAAGAGCCCGTTCGTA
TTTGGATGGATGGCTGCTTCGACATGATGCACTACGGTCACATGAACGCC
TTTCGCCAAGGCAAGGCTCTGGGGACCTATTTGGTGGTGGGCGTGAATTC
GGACGCCACCATCACGGCTTGCAAGGGCCCGCCCGTGATGAACGACGAGG
AGCGCCTGGCCGCGGTGGAGGGCTGCCGCTTCGTGGACGAGGTAGTCCCG
GACGTGCCCTACATCATGGATGAGGACTATTTGAAGATGGTGATGGAGAA
ATACCGGATCGACTTCGTCGTGCACGGCGACGACCCCTGCATCGTCAACG
GTCGGGACGTGTACGAGCTCCCTCAGAGCATGGGGAAGTACCGAACGATA
CCGCgcacggagggggtgagCACCACGGACATCGTGGGCAGGATGCTTTT
GATGAGCCGGCGGCACCATCAACGGACCATGTCGACGGGCTCGCAGACGG
GCCAGTTGGCctcggagaagaagacgcaAGGCGGGGCTTTGCAAGAGGGG
GTGTCCCCCTCGGAGATCGAGGCGCTGGAGCAGcagctccaccaccagga
aGGCGCGGCATTCTACCGACGGTCCCGCTTTCTGACCACCTCCCGGATGA
TTCGCTTGTTCTCCGCGGGCATGCGCGCGGGCCCCCCCCAGCCGGGTAGC
CAGGTCGTGTACATAGATGGGAGCTGGGACATGTTCCACGCCGGACACGT
CACGACGCTCAagaagatcaaggagggTCGGTGCCTCCCTGAGGGCCAGC
CCGTGTTCCTGATTGTGGGGGTGCACAACGATcagGTGGTGAATGCCCAG
CGTGGCTCCAACTTCCCGATCATGAATTTGCACGAGCGCGTCTTGTCCGT
GTTGGGGTGTAAGTACGTGGACGACGTCCTGATCGACGCTCCGTACACCG
TGACGCGGGAAATGATCGCTTCCCTCAAGCTTTCTCTGGTCCTGCATGGC
AGGCATAGGGACGAtatcgaggacgaggggacctggggggggggctgggg
ggagggagggaaggaggggaaggggaggaagaccctTTTGCCGTGCCGAA
AGAGATGAATGTCGCCTTCTGTAGAGTCCTGCGACGCGACGGCTGGTGGA
TTCAGTCAAGGAAACGGTCACAATTACAAGAACAAACTACAAGCTATCTG
GTGCATCTTACAGGCGAAGACTCTCGACCTTTTGGACAGTCCATTTATGC
TCTCCCTTACGCAGCGACTGGCTGTTCTcttggaggccttgggcGTCCCG
CCGCCCTACCCGGAGCCCGATCAAATTGTCCTTTGCGTCACGGCCGTTCT
CAGCACCCTACTCCTATATTTTTTGCTTTTCGGCAAGCGGCATCGACTCA
GAAGGAAAATGCTGGCGAAAGATTTGCGGGAAGCGCGGAAAAAGGtgcaa
gagctggaggagaaattgctggagatggaggtgaaggaggagggcgccgg
tCCTAAAGGCGACCAAGAGCCCGTTCGTATTTGGATGGATGGCTGCTTCG
ACATGATGCACTACGGTCACATGAACGCCTTTCGCCAAGGCAAGGCTCTG
GGGACCTATTTGGTGGTGGGCGTGAATTCGGACGCCACCATCACGGCTTG
CAAGGGCCCGCCCGTGATGAACGACGAGGAGCGCCTGGCCGCGGTGGAGG
GCTGCCGCTTCGTGGACGAGGTAGTCCCGGACGTGCCCTACATCATGGAT
GAGGACTATTTGAAGATGGTGATGGAGAAATACCGGATCGACTTCGTCGT
GCACGGCGACGACCCCTGCATCGTCAACGGTCGGGACGTGTACGAGCTCC
CTCAGAGCATGGGGAAGTACCGAACGATACCGCgcacggagggggtgagC
ACCACGGACATCGTGGGCAGGATGCTTTTGATGAGCCGGCGGCACCATCA
ACGGACCATGTCGACGGGCTCGCAGACGGGCCAGTTGGCctcggagaaga
agacgcaAGGCGGGGCTTTGCAAGAGGGGGTGTCCCCCTCGGAGATCGAG
GCGCTGGAGCAGcagctccaccaccaggaaGGCGCGGCATTCTACCGACG
GTCCCGCTTTCTGACCACCTCCCGGATGATTCGCTTGTTCTCCGCGGGCA
TGCGCGCGGGCCCCCCCCAGCCGGGTAGCCAGGTCGTGTACATAGATGGG
AGCTGGGACATGTTCCACGCCGGACACGTCACGACGCTCAagaagatcaa
ggagggTCGGTGCCTCCCTGAGGGCCAGCCCGTGTTCCTGATTGTGGGGG
TGCACAACGATcagGTGGTGAATGCCCAGCGTGGCTCCAACTTCCCGATC
ATGAATTTGCACGAGCGCGTCTTGTCCGTGTTGGGGTGTAAGTACGTGGA
CGACGTCCTGATCGACGCTCCGTACACCGTGACGCGGGAAATGATCGCTT
CCCTCAAGCTTTCTCTGGTCCTGCATGGCAGGCATAGGGACGAtatcgag
gacgaggggacctggggggggggctggggggagggagggaaggaggggaa
ggggaggaagaccctTTTGCCGTGCCGAAAGAGATGA

Synonyms

Publications