rna2400, rna2400 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2400
Unique Name	rna2400
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1644
Alignment location	CM002459.1:295104..297332 -

Link to JBrowse

Properties


Property Name	Value
Product	phosphoribosylformylglycinamidine cyclo-ligase
Orig transcript id	gnl\|cribi\|Naga_100004g33.9240.mrna
Orig protein id	gnl\|cribi\|Naga_100004g33.9240
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002459.1	supercontig	CM002459.1:295104..297332 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100004g33	gene2294	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM28309.1	cds2392	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2400	rna2400-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002459.1:295104..297332-
coding sequence from alignment at CM002459.1:295104..297332-

mRNA sequence

>rna2400 ID=rna2400|Name=rna2400|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp
ATGTCGTTCATGTTCCGGTGCTGTTGCCGCCCATTCTTGAAAGGTGGAGA
TGACGGAAGCAGGCCTTACTACGATCAGCTGGGTGTGCACAGGGAATGTT
CCACAGAAGATATCAAACGCGCCTACAAGAAAAAAAGCCTCGAGCTTCAT
CCTGACAAACTAGCGCAGCGTGGCCAGGTCCTAACAGTGGAAGACCAATC
GCGTTTCCAGCGTGTGAAGGAAGCGTACGAGGTGCTCGTAGACCCGAAAC
GACGCGATATGTACGATGAATTTGGAGAGACAGGCTTAAAGCTCATCGAA
GACCCTCAATCGATGGACCCTCAGACGGCTTTCAGCAACTTTATGCGTTC
GTCTTCCTACGACCGGTGCGCCATTTTCTCAACCCTCGTGGGTGTGACGG
CCTTCGTTCTTCTGTGGCCCGTATTGCTGTGCTTACAGGCAGACAAGACG
ATCCATATTCCTTGGACCGCCATCTGGACGCCGCTCTGGGTCTGTGATGC
TTTCCTCCTATTCATCCTCTGGTTCATGGTGTTCCTGGGCCGCAGGTCGC
CTGCCGAGGGCCTGGAGGAGGAGTGGCGCGACGACCTACCCGCCCGCGTC
CTGAATGCGGTCCAGCTCTCTTGCAACGTTTTGTTCCAAGTCTTCTTGAC
GCTCAAGCTCGACAAAGTGGTGCCCTGGGACTGGAGTCGGATTTTTGCGC
CCTGGCTGGCGTGGGAAGGGATTCAACTCTTCCGGAACTTGACCGTGACT
TCCACAGGCGGGGGCCCGACCCCCTTCGCCACCTCGGCGGAGGAAGGGGT
GCTCCTGAGGGCCATGGCTGTGCGGCAGGCGATGCTCGGCCTTCAGCACG
GGGTCTTACGCATCGTGTTCTGTGCCCTGGCTATACTGAGACTGGACGAG
AAGATCCGGGTGACTTGGTGGGTGGTCTTTACCCCCCTCTGGCTCTTCTT
CGCCACGCAATTCGTGGGCATCTGCGTGGAGTACGCGCTGGCCAAACGCT
TGCAGGAGGGTTTGATTGCAGCGGCAACTGCCACGGCGGCAGAGAGGGGC
GGGAGTGTGATGGACCCGGAGACTGGTGAAGTTGAATTGGGGCCCGAAGA
GGCCATGATACAGGAGCAGACGGAGCTGATGGCAAGCCGAGCCTCCATGC
TGGCTTGTCAGGCCGCGATCGTCTTGGTGATGGCCTTGTTGGGGGTGGCG
AGGATCGAGGGTGCGCACTTTTCAGTATTTTTGGTCTTCCTACCCGTCTT
CGTCATCGTCGGCTGCTTCACGTGCAGTCTGGGCTGCGCAGTCTGCTGCG
TCCGGGACGCGGACGGCATCATGGACGGGGAAAACCGACCCTTGAACCCG
GGAGCCGGAGGCCAGGGCACGGCGAGCGCCACAAGCATTGGTACTAACCC
GTCCGTGGCTGCGTCCATGGTCCGGGACAGTGGAGAGGGCCACGTGGAAG
CTGGGAGTGGAGGATCCCAACAGGACCTTCCTGAAGGCAGGAGCTCCTCA
CATAAGACCGGGTCCAAGGTCCGGAAGGAGGGCGGAACACCCTATCGTCC
ACCCGCTCCACTACCCTCATCCTCACAAGAAGGGCCGAAAACAGCTTCAG
GAAATGACAGCCAGGGGTGGGGGGGGGGGCAGGAGAGGAGATAA

protein sequence of rna2400

>rna2400-protein ID=rna2400-protein|Name=rna2400|organism=Nannochloropsis gaditana|type=polypeptide|length=742bp
MRGFLFVCPLWTTCLLYVSCLIHVNVEGFKLFPTAVSISFKAAPKHRSVG
IIASSSPNIETTTNHTARKVLVIGSGGREFALTQALLRLSSPEAIYVAPG
NAGTQQLSPPVVVNVPELKPNDFKGITDFAQKHGIEIVVVGPEDPLTNGL
QDFLRESNIPCFGPSAAAARLEGSKAWAKAFMNRHQIPTARHATFSDLTA
ALEYVEHQTLPMVVKASGLAGGKGVTIAHSREDARKALEAIMGTTPVFGP
AAGAEVVIEEYLVGDEVSAIAFCDGDSVAACLPFARDYKRLEEHDSGPNT
GGMGSFAPVTDLTTDIAASIQNILVTTVKGMREEGHPYHGVLYGGLIITK
GGAAEDGREEVKVLEFNCRFGDPEAQSILPLLSDKVDLAKLMLQCAQGGR
FGDTTGRLAASTPRDLTTKNNTFAATVIAASEGYPTATGSIKPHIIHGLP
LACRVPGVCSVAQAGTARLVLANGARVVTVSGGRVLGVTGEATTLRLALL
HAYHGLSEIRFQGMRCRTDIGAQAVRSQPVRVAILGSSRGTSVSKILTGK
RGVFEVVLVMSDTQDANGILSKAQAAHVPDCRFLGADSGGNGDSEMARDT
LEEKIEVAMEESKAEILLLNGYRRILSPRLCRVLRGRCLNIHPSLLPDFG
GHFDLAVHQAVLDAGRTSSGCSVHFVTENVDQGPVLIQKTCSVEPGFDTA
ATLKAKVQELEERAWEEAVRVYQEDLPSIARAILSMSDPKTF

mRNA from alignment at CM002459.1:295104..297332-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2400 ID=rna2400|Name=rna2400|organism=Nannochloropsis gaditana|type=mRNA|length=2229bp|location=Sequence derived from alignment at CM002459.1:295104..297332- (Nannochloropsis gaditana)
ATGCGCGGATTTCTCTTCGTGTGTCCTTTGTGGACAACCTGCCTGCTGTA
TGTTTCGTGCCTCATCCATGTCAATGTTGAAGGTTTTAAACTCTTCCCAA
CTGCAGTATCGATATCTTTCAAGGCTGCCCCAAAACATAGAAGTGTCGGC
ATCATCGCGAGCAGCAGCCCCAATATTGAAACTACCACCAACCATACCGC
CAGGAAAGTCCTTGTCATTGGTAGTGGCGGTCGTGAGTTTGCATTGACAC
AAGCTTTGCTACGTCTTTCTTCTCCTGAAGCAATCTATGTGGCTCCCGGG
AATGCCGGCACGCAGCAGCTTTCTCCGCCAGTGGTCGTCAATGTCCCCGA
ACTCAAACCTAACGATTTCAAAGGGATCACGGATTTTGCTCAAAAGCATG
GGATTGAGATAGTAGTGGTAGGCCCTGAAGACCCCTTAACGAATGGCTTG
CAGGATTTTTTGCGGGAGTCAAACATTCCTTGCTTCGGACCCAGTGCTGC
GGCGGCTCGATTGGAAGGAAGCAAGGCTTGGGCTAAAGCCTTCATGAACC
GCCACCAGATTCCCACGGCGAGACACGCGACTTTCTCCGACCTTACCGCT
GCCCTAGAGTACGTAGAGCATCAAACATTGCCGATGGTGGTAAAGGCATC
GGGACTGGCTGGAGGAAAAGGTGTGACGATAGCCCACTCCCGGGAGGACG
CCAGGAAGGCCTTGGAGGCGATCATGGGGACGACCCCTGTCTTTGGCCCG
GCCGCCGGGGCGGAGGTAGTGATCGAGGAGTATTTGGTAGGCGATGAGGT
GTCGGCCATCGCGTTTTGTGACGGGGACAGCGTGGCGGCCTGTCTTCCCT
TCGCGCGTGACTACAAGCGGCTGGAGGAGCACGACTCGGGCCCAAACACG
GGAGGAATGGGCTCCTTTGCGCCCGTGACTGACTTGACTACAGACATCGC
TGCTAGCATACAGAACATTTTAGTCACAACCGTGAAGGGAATGAGGGAGG
AGGGACACCCTTATCATGGCGTTCTGTACGGCGGTCTCATCATCACGAAG
GGAGGCGCAGCGGAAGACGGGAGGGAAGAGGTGAAGGTGCTGGAGTTCAA
CTGTCGCTTTGGGGATCCAGAGGCGCAGTCAATTCTACCATTATTGTCGG
ATAAAGTTGATTTGGCCAAGCTCATGCTGCAATGTGCGCAAGGAGGCCGA
TTCGGCGACACAACTGGCAGGCTCGCCGCGAGCACCCCTAGGGACTTGAC
GACGAAGAATAATACTTTTGCTGCCACAGTCATAGCCGCCTCCGAGGGCT
ATCCCACAGCCACGGGATCCATAAAACCTCACATTATCCACGGGCTGCCG
CTGGCTTGTCGCGTCCCCGGGGTTTGTAGCGTGGCGCAAGCAGGAACCGC
CCGCCTGGTCTTGGCCAATGGAGCACGGGTCGTTACCGTGTCAGGCGGGC
GCGTACTGGGAGTGACAGGGGAAGCAACAACGCTGCGCCTAGCGCTCCTG
CATGCATATCATGGCTTGAGTGAGATCCGCTTTCAAGGAATGCGGTGCAG
GACGGATATTGGCGCCCAAGCCGTGAGGTCTCAGCCTGTGCGCGTCGCGA
TATTAGGTTCTTCGAGAGGTACGAGTGTCTCCAAGATACTAACGGGCAAG
CGAGGGGTGTTCGAAGTGGTATTGGTCATGTCGGATACACAAGACGCAAA
TGGGATACTGTCAAAAGCTCAAGCGGCCCATGTACCCGATTGCCGTTTTC
TTGGCGCGGACAGTGGGGGGAATGGAGACTCGGAGATGGCACGGGATACT
CTGGAGGAAAAAATTGAGGTTGCCATGGAGGAGTCTAAGGCAGAAATCCT
CCTCTTAAATGGATACAGGCGTATATTATCCCCGCGCTTGTGTCGCGTAC
TGAGAGGCCGTTGCTTAAACATCCATCCTTCCCTGCTGCCAGACTTTGGT
GGACATTTCGATTTAGCGGTACATCAAGCTGTTTTGGACGCAGGACGAAC
AAGCAGTGGGTGCTCTGTCCATTTTGTGACTGAAAATGTCGACCAAGGAC
CTGTCTTGATACAAAAAACGTGCTCGGTAGAACCTGGCTTCGATACTGCA
GCCACACTCAAGGCGAAGGTCCAGGAGTTGGAGGAGAGAGCCTGGGAGGA
AGCTGTAAGAGTTTACCAAGAGGATCTGCCCAGTATTGCGCGCGCCATTC
TATCCATGAGTGATCCAAAGACGTTTTGA

Coding sequence (CDS) from alignment at CM002459.1:295104..297332-

>rna2400 ID=rna2400|Name=rna2400|organism=Nannochloropsis gaditana|type=CDS|length=2229bp|location=Sequence derived from alignment at CM002459.1:295104..297332- (Nannochloropsis gaditana)
ATGCGCGGATTTCTCTTCGTGTGTCCTTTGTGGACAACCTGCCTGCTGTA
TGTTTCGTGCCTCATCCATGTCAATGTTGAAGGTTTTAAACTCTTCCCAA
CTGCAGTATCGATATCTTTCAAGGCTGCCCCAAAACATAGAAGTGTCGGC
ATCATCGCGAGCAGCAGCCCCAATATTGAAACTACCACCAACCATACCGC
CAGGAAAGTCCTTGTCATTGGTAGTGGCGGTCGTGAGTTTGCATTGACAC
AAGCTTTGCTACGTCTTTCTTCTCCTGAAGCAATCTATGTGGCTCCCGGG
AATGCCGGCACGCAGCAGCTTTCTCCGCCAGTGGTCGTCAATGTCCCCGA
ACTCAAACCTAACGATTTCAAAGGGATCACGGATTTTGCTCAAAAGCATG
GGATTGAGATAGTAGTGGTAGGCCCTGAAGACCCCTTAACGAATGGCTTG
CAGGATTTTTTGCGGGAGTCAAACATTCCTTGCTTCGGACCCAGTGCTGC
GGCGGCTCGATTGGAAGGAAGCAAGGCTTGGGCTAAAGCCTTCATGAACC
GCCACCAGATTCCCACGGCGAGACACGCGACTTTCTCCGACCTTACCGCT
GCCCTAGAGTACGTAGAGCATCAAACATTGCCGATGGTGGTAAAGGCATC
GGGACTGGCTGGAGGAAAAGGTGTGACGATAGCCCACTCCCGGGAGGACG
CCAGGAAGGCCTTGGAGGCGATCATGGGGACGACCCCTGTCTTTGGCCCG
GCCGCCGGGGCGGAGGTAGTGATCGAGGAGTATTTGGTAGGCGATGAGGT
GTCGGCCATCGCGTTTTGTGACGGGGACAGCGTGGCGGCCTGTCTTCCCT
TCGCGCGTGACTACAAGCGGCTGGAGGAGCACGACTCGGGCCCAAACACG
GGAGGAATGGGCTCCTTTGCGCCCGTGACTGACTTGACTACAGACATCGC
TGCTAGCATACAGAACATTTTAGTCACAACCGTGAAGGGAATGAGGGAGG
AGGGACACCCTTATCATGGCGTTCTGTACGGCGGTCTCATCATCACGAAG
GGAGGCGCAGCGGAAGACGGGAGGGAAGAGGTGAAGGTGCTGGAGTTCAA
CTGTCGCTTTGGGGATCCAGAGGCGCAGTCAATTCTACCATTATTGTCGG
ATAAAGTTGATTTGGCCAAGCTCATGCTGCAATGTGCGCAAGGAGGCCGA
TTCGGCGACACAACTGGCAGGCTCGCCGCGAGCACCCCTAGGGACTTGAC
GACGAAGAATAATACTTTTGCTGCCACAGTCATAGCCGCCTCCGAGGGCT
ATCCCACAGCCACGGGATCCATAAAACCTCACATTATCCACGGGCTGCCG
CTGGCTTGTCGCGTCCCCGGGGTTTGTAGCGTGGCGCAAGCAGGAACCGC
CCGCCTGGTCTTGGCCAATGGAGCACGGGTCGTTACCGTGTCAGGCGGGC
GCGTACTGGGAGTGACAGGGGAAGCAACAACGCTGCGCCTAGCGCTCCTG
CATGCATATCATGGCTTGAGTGAGATCCGCTTTCAAGGAATGCGGTGCAG
GACGGATATTGGCGCCCAAGCCGTGAGGTCTCAGCCTGTGCGCGTCGCGA
TATTAGGTTCTTCGAGAGGTACGAGTGTCTCCAAGATACTAACGGGCAAG
CGAGGGGTGTTCGAAGTGGTATTGGTCATGTCGGATACACAAGACGCAAA
TGGGATACTGTCAAAAGCTCAAGCGGCCCATGTACCCGATTGCCGTTTTC
TTGGCGCGGACAGTGGGGGGAATGGAGACTCGGAGATGGCACGGGATACT
CTGGAGGAAAAAATTGAGGTTGCCATGGAGGAGTCTAAGGCAGAAATCCT
CCTCTTAAATGGATACAGGCGTATATTATCCCCGCGCTTGTGTCGCGTAC
TGAGAGGCCGTTGCTTAAACATCCATCCTTCCCTGCTGCCAGACTTTGGT
GGACATTTCGATTTAGCGGTACATCAAGCTGTTTTGGACGCAGGACGAAC
AAGCAGTGGGTGCTCTGTCCATTTTGTGACTGAAAATGTCGACCAAGGAC
CTGTCTTGATACAAAAAACGTGCTCGGTAGAACCTGGCTTCGATACTGCA
GCCACACTCAAGGCGAAGGTCCAGGAGTTGGAGGAGAGAGCCTGGGAGGA
AGCTGTAAGAGTTTACCAAGAGGATCTGCCCAGTATTGCGCGCGCCATTC
TATCCATGAGTGATCCAAAGACGTTTTGA

Synonyms

Publications