rna24, rna24 (mRNA) Nannochloropsis gaditana

Overview
Namerna24
Unique Namerna24
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1899
Alignment locationCM002455.1:80956..81853 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101660g1.5928.mrna
Orig protein idgnl|cribi|Naga_101660g1.5928
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:80956..81853 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101660g1gene22Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna24rna24-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30649.1cds24Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna24 ID=rna24|Name=rna24|organism=Nannochloropsis gaditana|type=mRNA|length=1899bp
ATGGGCAAGAGGGATAAGAGGAAAAAGGCAGCAGCTAAAGTCGGGGGAGC
TGGTGCGGGGAAGAAGGAGGAAAAAAGAAAGAAGCAAGAGGCGAAATCAA
AAAAGAAAGCGACCAAGGGAGGAGGTGGTGCCGGAGAAAAAGACAAAGAG
CTGCAAGAAGAGGACATTGAGGCGATATTGGCTGAGATTCGTGCCAAAGA
TGCGGCCAAGACAGCTGTGACTATTTCGGAGGCACCTCAACCCTCCCCGC
GCACGAATTTCTCTCTGACCACTCTACCTTCCGGGGAGCTCCTGCTTTTC
GGGGGTGAATATTACGACGGTGAAGATACAATTGTTTACAATGGGGTCTA
TAGGTGGCACCTGGAACGAGGGGAGTGGCGTGTGATCGAGAGCCTGAATG
CCCCGCCACCGCGCTGTTCTCACCAGGCTGTGTGCTACCGGGAGCACCTC
TACGTGTTCGGTGGGGAATTCGGGACAAGCGACCAATTCTACCACTATCG
AGACCTCTGGCGGCTCGATTTGAAAAGCAACAAATGGGAGGAGCTTCCCC
TTCAGAAAGACACGCCCTCTGCCCGCTCGGGGCATCGTATGTGCCTTTGG
CGCCATTATTTGGTCCTTTTTGGAGGATTCTATGAGGCCTTCCGGGAGAC
GCGCTGGTACAACGACCTTTTCCTCTTCAACCTGCAGGACTTGAAGTGGA
AAAAAATCGTTTATTCTGCAACCGCACCGGTCCCGACGCCTCGCTCGGGC
TGCCAAATGGCTGTCGGGACCGACGCTGTGTATATCCACGGCGGCTACTC
CAAGGTGAAAGCGACCGTCACGACCGTATTCGGTCATTCCCAGAGTAGCA
AGGCTGAGGGTCACGTCCACGACGACACATGGGCCCTCCAAATGAAAACC
GTCCCCGCGGGGGGGCAGCCGTACTGGGAACGGGTCTCACGCAAGGGGTC
TGCCCCCTCCCCTCGTTCTGGGGCTTCCATGATAAGCTACAAAACCATTG
CCCTCTCCTTCGGCGGGGTCCATGATGTTGAAGGCAAACAGCACGCTATG
ACCTCGGTCTTTTACGACGACCTCTATCAGTTCGACATGCTCCGCAGACG
CTGGTATGCGGTCGCTCTCCGCCAAGGTGCCGGGGAAGGGAGAGAGGGGT
CTGGACGGAAGCGAAGGAAGAAAAAATCCGAAGAAAGTCAAGAAAGAAGC
GGTGATGGAGAGAATGGAGGGAGGAAGAGGGAGGAGGAGGAAAAGGAAGA
GGAGGAGGAGGACGGAGGATTCGCATACATTGATCTGGAGGGAAATATTG
TGTATGTCAGCGACGAGGGGGAGCAGGAAGGAGAGGAGGGAGGGATGGAG
GACGAGGTCGGCCCAAGAAAGGCGCCCGTGGCTGCGGAGGAGGGCAATGG
GCATGTGGACGAGGAGAAGAAAGAGGGAAGGCAAGAGGAGAAGAAGGAGA
CGGTAGAGGGAGAGCCGTCTGCAGCAGGAGCGAGCGAGGAGTCGCTTACC
TGCCCGACCTGCCCCCCTCCTCCTCGCAAGAAGGAGATTCGGGTGGTGGA
GGGCTTCGGGCTCGCCGTCGTCGAGTCGGCTCCAGCCTCTGCGTCGCATC
ATGAACGGATCGGACCGCTCCCTCGCATCAACGCCGCCCTGACCATGCGG
GGTCACTTGCTCTACCTCTACGGCGGCCTCTTTGAAGAGGGCGACAGGGA
ATACACCTTGGACGACGCCTGGTGCCTCGACTTGAACAAGAGGGAGGAAT
GGCGGTGTATCCTCCCGGGCACCATGCACTTGCAGACGTGGAGGGGGGAG
GACGACGAAACCACCCTGGGAGAGGAGGAAGATGAGGAAGAGGAAGAAGC
GGAAGACGAGGATGACAGCGACAACAGTGAGAGCACGAGTGGCTCGTAG
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protein sequence of rna24

>rna24-protein ID=rna24-protein|Name=rna24|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MREKEYKTMAFELAVRRFEELRPVLERLNELEVRQVSFPRPCLPPSLPPF
SFLRVTKKGGRAALSGSECVTIRAWRWRQGPQEKRTGRGTKQHRLGGRVS
CSWDFCHACLYTCMHTNAFIPFLSFSLPSLLSSILSPSPPPLPALHLQRA
MEEKLAERAAGKSAKGGKAAKMSQKEREKKRR
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mRNA from alignment at CM002455.1:80956..81853+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna24 ID=rna24|Name=rna24|organism=Nannochloropsis gaditana|type=mRNA|length=898bp|location=Sequence derived from alignment at CM002455.1:80956..81853+ (Nannochloropsis gaditana)
AAGAAGAcaggatgaaggagaaagcgcaGCAAGGAGACATGCACCCgggc
gaggaaaaaaaaggaaattcagacagggaggaggagggtttctgggggga
agaagctATCCAACTCACCCATCTCGCTCCATCGTACCGAAACAGAGAAA
AATTACAGATTTCGAGTAGCgaccgtccctccctcctcccccgttcctcc
tcctcctcctcctcctcctcctcctcctcttcctccctccctgcctccac
cccgtcTACCCCCGACTTGCGCCGGCGTCCgctgatcctccctcccttcc
ttctccccccggcCCGTCGCGTGCGGGCATTGCAGGCGTCGACTACgtga
tgagggagaaagaataCAAGACCATGGCCTTTGAACTCGCCGTCCGCCGC
TTCGAGGAGCTTCGACCGGTCTTGGAACGCTTGAACGAGCTGGAGGTCCG
GCAGGTAagcttcccccgcccctgcctccccccatccctccctcccttct
ctttcctgaGGGTAacgaaaaaaggaggacgggcggctCTGTCTGGGTCA
GAGTGCGTCACAATCCgtgcgtggaggtggaggcagggaccCCAAGAGAA
GAGGACAGGGCGAGGGACGAAGCAGCAcaggcttggagggagggtgtcTT
GCTCCTGGGACTTCTGTCATGCTTGCTTGTATACATGTATGCACACCAAC
GCATTCATCCCTTTTCTGTcgttctctcttccctcgctcctttcttccat
tctctccccctctcccccccccctacctgcgctccacctccagcgggcga
tggaggaaaagcTCGCCGAACGGGCAGCAGGCAAAtcggccaagggaggg
aaggccgcgAAAATGTctcaaaaagaaagagagaagaagcgCCGGTAG
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Coding sequence (CDS) from alignment at CM002455.1:80956..81853+

>rna24 ID=rna24|Name=rna24|organism=Nannochloropsis gaditana|type=CDS|length=549bp|location=Sequence derived from alignment at CM002455.1:80956..81853+ (Nannochloropsis gaditana)
atgagggagaaagaataCAAGACCATGGCCTTTGAACTCGCCGTCCGCCG
CTTCGAGGAGCTTCGACCGGTCTTGGAACGCTTGAACGAGCTGGAGGTCC
GGCAGGTAagcttcccccgcccctgcctccccccatccctccctcccttc
tctttcctgaGGGTAacgaaaaaaggaggacgggcggctCTGTCTGGGTC
AGAGTGCGTCACAATCCgtgcgtggaggtggaggcagggaccCCAAGAGA
AGAGGACAGGGCGAGGGACGAAGCAGCAcaggcttggagggagggtgtcT
TGCTCCTGGGACTTCTGTCATGCTTGCTTGTATACATGTATGCACACCAA
CGCATTCATCCCTTTTCTGTcgttctctcttccctcgctcctttcttcca
ttctctccccctctcccccccccctacctgcgctccacctccagcgggcg
atggaggaaaagcTCGCCGAACGGGCAGCAGGCAAAtcggccaagggagg
gaaggccgcgAAAATGTctcaaaaagaaagagagaagaagcgCCGGTAG
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Synonyms
Publications