rna2392, rna2392 (mRNA) Nannochloropsis gaditana

Overview
Namerna2392
Unique Namerna2392
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1194
Alignment locationCM002459.1:273949..275207 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100004g23.9107.mrna
Orig protein idgnl|cribi|Naga_100004g23.9107
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002459.1supercontigCM002459.1:273949..275207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100004g23gene2286Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2392rna2392-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM28176.1cds2384Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2392 ID=rna2392|Name=rna2392|organism=Nannochloropsis gaditana|type=mRNA|length=1194bp
ATGACGCGTTATTTAGCATGGCCAAGGCGGCTCGTCTATGGTAGCTGGAG
ACACGGTCAAGGCAGCGCTTTCGCCACATGTAACAAGCCTTGCCTTCGCT
TCAACCGCATACGGCGTTTAGCAATGGTATGCATAAGACCCTCTCATTCT
TTTTCCAAGCCAATCTCTTTATGGCTCCAAGACCAGCTCTTCAAGAGGTT
TACTTCACGTCAAGTCCTGCCCTTTCCTACGCCCACGCATGTTCAAGTCG
AAGCCACCGAACCACAAATCAAGCCTAGTAGGGGTAGTCACGTAGATGGG
AAGCAAGTGGGGTTATCAGAAGCTGCTGAGACGGAGGAAAAGCAGGGAAA
ATGGTCATCACCTGGTGGATACGAGCCATTTCCATGGGGGTCAGCGCCCG
AGGCTGAGGTATCGGCTTTCGGGCCTCAGGAAAAATCTATGTTCCAGCGA
TTGAGATACTACCTGTCCACTTTAGTCGTGCGAGAAATGCTAGCAAAGAA
GGTGGCAATGCACACGAATGCTGTGAAGAGAGACGTGTTTCGATCCCTCA
GTGGGTCTACACGCTTCGCCTTCATCCAAGCGGTTCGCGCCATTTTCGAA
GGCACGTGTAAGACGCCCGAGCCGACGTGGAAGCTCACATACCATGATGC
CCGCTCTCCGTCCTCGGAATGGGAACTCGGCTACCCTCCTCTCTCTGCCA
TGATGGAGCCTAAACTTGCCAGCTTGTACGAAAACCTGGTCTCTAGCTTT
CGCGCCAAAGACCTGGAAGTGCGGTATGAGCTGGAGAGCATCCGGGTACT
CAGTTTGGCGGGGTTTCGAGCAATAGTTGGATTGCGAGAGGCCCAGGAGA
AGCCGGAACGGTCATCGGTGAACATTGGGGCGCTGTCGCTGGTTTTCGGG
AAGCCAGTCACCGTGCCCTCGGAGTCAGAGAGGAAAGAACCTGTGCCTAT
TAGCATTTTGTACCGCATGGCCGTCACTTTCCGCTGTCGCGAGCTCTTCA
CGGTACGAAACTCGGGGACAGGGGAAGTGCTGCAGGGGGAAGACAGGATG
AAAGAAGTGGACCATGTGGCCCGCTTTGAGGTAAAGGTCGACGAAGAAAA
GAAAGCACCGTTCGAGTGGATTCTGGTAGACATCGACGATCAGCTGGAGG
GGAATGAGTATTTCAAAGATATGCTTGAAAGCAAAAAGCCGTAA
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protein sequence of rna2392

>rna2392-protein ID=rna2392-protein|Name=rna2392|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MLGLHSISKRVSKSVTKNSKDGSRGAGPVLSSAALAALIALNEARRALTR
NAKSLKVSGLQRIFKRESSPIGRMKVSTTTAGDAPTTAAADVCTCDTWCL
AGSTKLTVDRAAVAIASRNRTDRMISIRLKKGCETRIRRGKKKCQGILVH
IEW
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mRNA from alignment at CM002459.1:273949..275207+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2392 ID=rna2392|Name=rna2392|organism=Nannochloropsis gaditana|type=mRNA|length=1259bp|location=Sequence derived from alignment at CM002459.1:273949..275207+ (Nannochloropsis gaditana)
CCCGCAACATAGCTTGAAAGGAAACAGTCCTACCCTTGCAAGGGTCCAGT
CTCACACATCCAGTCCATGATCATTCATTATATAAAACGTATATATTAAG
ACGCGAGTCCTTCCACACATTGAAAACGGTCCACATGGCAGCATACACAG
GgtcaggaggcaggaggtaaCACCGTCAAGGAGGCAAGTATTCATCTTTC
AGGAAAAACGCTTGTCGCACCTCAAAAATGTCAGATAATTATGGTCAATA
GCTATGTAATATGCCAAGAAAGAAGTCGTAAATGACCGTAGTCTTCAACA
TTGATCTCTGAGAACAAACTTCAAAAAACTTGTAGAGAAAATTGCCCGGA
TTTTGTCGTCAAGACTGATTattttccttcctacccaGCAGAATTTGATT
GAAGTCTACTCCACACACCCACATATCGTCGATGATTACCCACTTTCCAA
TTTTACTGCTTTGCCCCAGACTTGTTGGCATCCAATTCAACCTTGTACGT
ACTCTTGTACAATTTTAAGGCGTCGACCAACGCGCTAAGTTGACATTGCG
ACGTTACCTCGAGCACATCATTTTGGACCTTCACGAATACTGCGGCATGG
AAGGCATCGGGATAAATGTTAGGATTGCACTCCATCTCCAAACGCGTCTC
AAAATCCGTAACCAAAAACTCTAAAGATGGCTCACGAGGCGCGGGACCTG
TCTTATCTTCAGCTGCATTGGCTGCTTTGATAGCCCTGAACGAAGCAAGA
AGAGCGTTGACTCGCAACGCCAAATCTTTGAAAGTCTCAGGTTTGCAGCG
AATTTTTAAACGCGAATCGTCTCCCATCGGCAGGATGAAGGTCTCCACGA
CTACAGCAGGGGACGCACCAACAACTGCGGCGGCAGATGTTTGTACATGC
GATACCTGGTGCTTGGCAGGCAGCACAAAACTGACAGTAGACCGGGCAGC
GGTGGCAATCGCCAGTAGGAATAGGACAGACCGCATGATAAGCATAAGGT
TGAAGAAGGGCTGTGAAACGAGAATAaggcgggggaaaaagaaatgtCAG
GGAATTCTTGTGCACATCGAATGGTAAACTTTATGTGATGCTTCCTTCCA
ATCGTACTAGAACATGATGTGAGCGTGTTGTACACATATGCTCACGCAGC
CTCATAACGCGTTGTTTGCAATTGGAAAAGTGAGGTATCTTCCAGTTGAA
GCATGGTGAGGCGGCTTGAACGAGTGGATGCTGCAAGTCATGGATATCCC
AACAAAATC
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Coding sequence (CDS) from alignment at CM002459.1:273949..275207+

>rna2392 ID=rna2392|Name=rna2392|organism=Nannochloropsis gaditana|type=CDS|length=462bp|location=Sequence derived from alignment at CM002459.1:273949..275207+ (Nannochloropsis gaditana)
ATGTTAGGATTGCACTCCATCTCCAAACGCGTCTCAAAATCCGTAACCAA
AAACTCTAAAGATGGCTCACGAGGCGCGGGACCTGTCTTATCTTCAGCTG
CATTGGCTGCTTTGATAGCCCTGAACGAAGCAAGAAGAGCGTTGACTCGC
AACGCCAAATCTTTGAAAGTCTCAGGTTTGCAGCGAATTTTTAAACGCGA
ATCGTCTCCCATCGGCAGGATGAAGGTCTCCACGACTACAGCAGGGGACG
CACCAACAACTGCGGCGGCAGATGTTTGTACATGCGATACCTGGTGCTTG
GCAGGCAGCACAAAACTGACAGTAGACCGGGCAGCGGTGGCAATCGCCAG
TAGGAATAGGACAGACCGCATGATAAGCATAAGGTTGAAGAAGGGCTGTG
AAACGAGAATAaggcgggggaaaaagaaatgtCAGGGAATTCTTGTGCAC
ATCGAATGGTAA
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Synonyms
Publications