rna239, rna239 (mRNA) Nannochloropsis gaditana

Overview
Namerna239
Unique Namerna239
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1149
Alignment locationCM002455.1:599606..601555 +

Link to JBrowse

Properties
Property NameValue
Productserine protease family s09x
Orig transcript idgnl|cribi|Naga_100321g3.7986.mrna
Orig protein idgnl|cribi|Naga_100321g3.7986
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:599606..601555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100321g3gene228Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna239rna239-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30432.1cds239Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna239 ID=rna239|Name=rna239|organism=Nannochloropsis gaditana|type=mRNA|length=1149bp
ATGAGCGCCATCAAGAACCACAATGTTTTTGCCACCAACCATCAATCTTT
CGGCGCCCCCACCCGGGCAACTGACATTGTGGAGATGGAAAGTCTCATGT
CGCTCGACCAGCCGTTTGAATCGAAGGTCATGCCGCGATGGGAGCGTAAG
AAGCTACAAAAGCTTGGCTCTGCGGCCGGCGCGGGCTTGGACGGTGACAA
GACAGGCAGCCACGACCGGTTTATCCCCAACCGTTCGGGTATGCACATGG
ACAAGGCGCACTACGCGCTCTCCAAGGAGAACCCAAACCCACAGGGCGAC
GACGACAAGAAGGACGACTCGGCCTCCTTGGTCGAGGACAGGGCCATGGG
GGAGGACGGCATGGAGAAGGTTTCCAAGCAGGAGGCGTCAATGGTGCAGA
AGAAGGAGTACCATCAAGCCCTGGAGGCACAGCTTTTGGACGGGGAAAAA
GAGCACCGCGTCCTGGCCTTCCGAAACAAGGCACCCTTACCAAAGGAGGG
TTTCCAGAACCACTTACAAGTACTCTACACTCAGAACAAGGGCACTGCGC
CCAGCAGCCTTCGCAGCTACCGGCATATCCCCTCCGCGCCCGAACGGATC
CTGGACGCCCCAGACCTGCTGGACGATTACTATCTGAACATCATGGACTG
GGGTGCCTCCAACGTCCTAGCCATTGCCCTGACTCAGACGCTGTATTTGT
GGAACGCCGCCACGGGGGATATCACCGAGCTGATGTCCGTACCTGACGCG
GACGACTACATCACAAGTGTCTCCTGGATCCAGGATACGGGCTCGCACCT
CGCCATTGGAACAGCCTCGGCGCAGACCCAGCTTTGGGACGTAGCAGCGC
AAAAGCAGGTTCGGTCGATGAACGGGCACTCCGCCCGCGTGAGCGCCCTG
GCATGGAAAAGACACATCCTCTCCTCCGGCTCCCGGGATGCGACCATCGT
CCACCACGACGTGCGCGTGCAGAACCACCATGTGGCCACCCTGCTCGGCC
ACGAGCAGGAGGTCTGTGGCCTCTCCTGGTCGCCGGACGGCTCTCTTTTG
GCCTCGGGTGGAAACGATAACCTCCTGTGTCTGTGGGACCAGGCCTCGAC
CTCGGGCATCGGGGGCGGCTGTCAAAGCCCTGGCTTGGTGCCCTTTTGA
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protein sequence of rna239

>rna239-protein ID=rna239-protein|Name=rna239|organism=Nannochloropsis gaditana|type=polypeptide|length=373bp
MTMGGAFTHILRSSWVSNLLWTGGGLLALGLGTLYYFQDNLLYHPSIPGM
PKSPRENPPGYRSPAEHGIHNFEEHFLKTEDGATIHAWLLLQPDSASIPT
VVYFHGNAGNMGFRLPHGSNLYKQCRVNVMMVDYRGYGSSKGTPSEEGLK
ADGRAVLTTLRAHRRVAPDQIVLYGKSLGGAVALALAEERPDEVLAVVLE
NTFLSIPAMVDVLMPLVKIFKGLILRIGWRNDRRVSQLAHPILFMSGLAD
ELVPPSHMRQLKELAVRSVWAQLYTVADGQHNDTWFRGGIAYYRNFRDFL
GKVAELVAEGKAGSKATNAQNVCASTSSVTANVGGEGLQEGIAGGSIPVM
PPASLYNVPSTAASVDLKTKKSD
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mRNA from alignment at CM002455.1:599606..601555+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna239 ID=rna239|Name=rna239|organism=Nannochloropsis gaditana|type=mRNA|length=1950bp|location=Sequence derived from alignment at CM002455.1:599606..601555+ (Nannochloropsis gaditana)
TTTCGATAATCTTGTCAGCTTACTCTCTGCGATGTGAAGAACAACATGCT
GACTATTTGCCATCGTGTCatcgcccttttccctctctccacagAAAGGA
CGCTGAGCATCTGCGTTCATTGTAAATACGACTTTTTACAAAACAGAAGG
ATTTGGGGCACTAGAGGATTCCTAACATTGATATTGGTACGTGGTTTTGT
TCAATGTTTGCGTTCGGGATTCGGAACTCAGGGTCTCCCGAGGTCCTCAT
GGCTTCTAGAGGGATGAGCAAATCATGTGTGTTCGTGCGGGTGACATATC
AAAATTCGGATCGAACATCGAACAAGAAGTCGGCATGGTCTGATATCGGG
TATTGGGGAGATGAGCTTATGATTAAAATTTTATGCATTGGAGCTGGACT
GAAAATTCGCTCGCCCACAACGGCCAGCATTCCGTGATGCTCATATGTAA
TTTTCAACATGAAGCTCTTTCTTATTGTCATACCTCGAGGAGTGCATGCT
AGGTAAATACTTAGACGTTTCTTTGCTAAGCTCACTCTGTAAGTATCCCG
CCGTTGTGTTGCTATACTATCTATATCCAGACAGGGCCTCTTTTTATAAC
CGCATGACCGCCGCCTATCCTCCTATCGCCTAATATGACCATGGGCGGAG
CTTTCACTCACATTCTCCGCTCCAGCTGGGTTTCAAACCTGCTATGGACC
GGCGGCGGCCTTCTGGCATTGGGCTTGGGCACGCTGTATTATTTTCAAGA
CAATTTGCTGTaccatccctccatcccaggCATGCCCAAGTCTCCCCGAG
AGAACCCCCCCGGATATCGCTCTCCGGCCGAACACGGCATCCACAACTTT
GAAGAGCACTTCCTCAAAACTGAAGATGGCGCAACTATTCACGCTTGGCT
CTTGCTTCAACCTGACTCAGCCAGCATCCCCACGGTCGTGTACTTTCACG
GGAACGCGGGGAACATGGGCTTCCGTCTTCCACACGGCAGCAATCTGTAC
AAACAATGCCGGGTGAATGTGATGATGGTGGATTATAGAGGTTACGGCTC
CAGTAAAGGTACGCCAAGCGAGGAAGGCCTCAAGGCGGACGGACGCGCGG
TCCTGACCACCCTGCGTGCCCATCGGCGGGTGGCGCCCGATCAGATCGTG
CTTTACGGCAAATCACTGGGAGGAGCCGTTGCTTTGGCCTTGGCTGAGGA
GCGCCCGGATGAAGTTCTGGCAGTGGTATTGGAAAACACTTTTTTGAGCA
TTCCAGCCATGGTCGACGTGCTCATGCCCCTAGTCAAGATCTTCAAAGGG
CTGATCCTGCGGATCGGTTGGCGCAACGACAGGCGCGTGAGCCAGCTGGc
ccaccccatcctcttTATGTCCGGCCTCGCCGACGAGCTAGTTCCTCCGT
CGCACATGCGTCAGCTCAAAGAGCTGGCGGTTCGCTCTGTCTGGGCTCAG
TTGTATACCGTCGCAGACGGCCAACACAACGATACGTGGTTTCGGGGCGG
CATCGCTTACTACCGCAACTTCCGGGACTTCCTTGGAAAGGTAGCGGAGT
TGGTTGCAGAAGGCAAAGCGGGAAGCAAGGCTACCAACGCTCAGAATGTA
TGTGCGTCGACCAGCTCCGTGACGGCAAACGTAGGTGGAGAAGGTCTGCA
AGAGGGTATAGCAGGGGGAAGCATTCCAGTCatgcctcctgcctcgcttT
ACAACGTCCCTAGTACCGCGGCTTCCGTCGATTTAAAGACCAAGAAAAGC
GATTGAAGAAGTACTCGTTGTGTGGGAGGAGTGTAGGTCAGCAAGTGAAA
CAATCTCCGCAAATGCTAGTTCGCGTGTGAATCATGTATAAAGCCAAATG
AAAAAATTATCAGCTGACTCTCGCTTGTAATTCGGCTCACACATCATATT
TATTGGGCTTTCTGATTACATCGTGGTGGGGCGTCGCGAGTTTGACCCGA
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Coding sequence (CDS) from alignment at CM002455.1:599606..601555+

>rna239 ID=rna239|Name=rna239|organism=Nannochloropsis gaditana|type=CDS|length=1122bp|location=Sequence derived from alignment at CM002455.1:599606..601555+ (Nannochloropsis gaditana)
ATGACCATGGGCGGAGCTTTCACTCACATTCTCCGCTCCAGCTGGGTTTC
AAACCTGCTATGGACCGGCGGCGGCCTTCTGGCATTGGGCTTGGGCACGC
TGTATTATTTTCAAGACAATTTGCTGTaccatccctccatcccaggCATG
CCCAAGTCTCCCCGAGAGAACCCCCCCGGATATCGCTCTCCGGCCGAACA
CGGCATCCACAACTTTGAAGAGCACTTCCTCAAAACTGAAGATGGCGCAA
CTATTCACGCTTGGCTCTTGCTTCAACCTGACTCAGCCAGCATCCCCACG
GTCGTGTACTTTCACGGGAACGCGGGGAACATGGGCTTCCGTCTTCCACA
CGGCAGCAATCTGTACAAACAATGCCGGGTGAATGTGATGATGGTGGATT
ATAGAGGTTACGGCTCCAGTAAAGGTACGCCAAGCGAGGAAGGCCTCAAG
GCGGACGGACGCGCGGTCCTGACCACCCTGCGTGCCCATCGGCGGGTGGC
GCCCGATCAGATCGTGCTTTACGGCAAATCACTGGGAGGAGCCGTTGCTT
TGGCCTTGGCTGAGGAGCGCCCGGATGAAGTTCTGGCAGTGGTATTGGAA
AACACTTTTTTGAGCATTCCAGCCATGGTCGACGTGCTCATGCCCCTAGT
CAAGATCTTCAAAGGGCTGATCCTGCGGATCGGTTGGCGCAACGACAGGC
GCGTGAGCCAGCTGGcccaccccatcctcttTATGTCCGGCCTCGCCGAC
GAGCTAGTTCCTCCGTCGCACATGCGTCAGCTCAAAGAGCTGGCGGTTCG
CTCTGTCTGGGCTCAGTTGTATACCGTCGCAGACGGCCAACACAACGATA
CGTGGTTTCGGGGCGGCATCGCTTACTACCGCAACTTCCGGGACTTCCTT
GGAAAGGTAGCGGAGTTGGTTGCAGAAGGCAAAGCGGGAAGCAAGGCTAC
CAACGCTCAGAATGTATGTGCGTCGACCAGCTCCGTGACGGCAAACGTAG
GTGGAGAAGGTCTGCAAGAGGGTATAGCAGGGGGAAGCATTCCAGTCatg
cctcctgcctcgcttTACAACGTCCCTAGTACCGCGGCTTCCGTCGATTT
AAAGACCAAGAAAAGCGATTGA
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Synonyms
Publications